Monitoring Tasks: Difference between revisions
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<td>Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report.</td> | <td>Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report.</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td> </td> | <td>Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
| Line 44: | Line 44: | ||
<td>receive output from hgTracksRandom cron; alert admins to problems</td> | <td>receive output from hgTracksRandom cron; alert admins to problems</td> | ||
<td>as needed</td> | <td>as needed</td> | ||
<td> </td> | <td>many: kuhn, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | ||
<td>many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | <td>many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | ||
<td>many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | <td>many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | ||
| Line 53: | Line 53: | ||
<td>receive output from gbLoaded cron job and alert braney if anything seems very outdated</td> | <td>receive output from gbLoaded cron job and alert braney if anything seems very outdated</td> | ||
<td>daily, problems every 3-6 months</td> | <td>daily, problems every 3-6 months</td> | ||
<td> </td> | <td>Steve, Luvina</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
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<td>receive output from showProcesslist.csh</td> | <td>receive output from showProcesslist.csh</td> | ||
<td>daily, no action</td> | <td>daily, no action</td> | ||
<td> </td> | <td>Steve, Matt </td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
| Line 71: | Line 71: | ||
<td>get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job)</td> | <td>get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job)</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td> </td> | <td>Steve, Matt</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
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<td>get an email from backupCentral.csh each month (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834)</td> | <td>get an email from backupCentral.csh each month (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834)</td> | ||
<td>monthly</td> | <td>monthly</td> | ||
<td> </td> | <td>Steve, Brian </td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
| Line 89: | Line 89: | ||
<td>receive an email on additions and subtractions to files in /gbdb on hgnfs1</td> | <td>receive an email on additions and subtractions to files in /gbdb on hgnfs1</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td> </td> | <td>Steve, Luvina </td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
| Line 98: | Line 98: | ||
<td>receive an email from cron if qateam DailySandboxUpdate fails</td> | <td>receive an email from cron if qateam DailySandboxUpdate fails</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td> </td> | <td>Steve, Brian</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
| Line 125: | Line 125: | ||
<td>get output from checkGenomeMysql</td> | <td>get output from checkGenomeMysql</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td> </td> | <td>Steve, Matt</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
| Line 162: | Line 162: | ||
<td>runs weekly, complains monthly</td> | <td>runs weekly, complains monthly</td> | ||
<td> </td> | <td> </td> | ||
<td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
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<td>runs weekly, complains monthly</td> | <td>runs weekly, complains monthly</td> | ||
<td> </td> | <td> </td> | ||
<td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
| Line 180: | Line 180: | ||
<td>runs weekly, complains quarterly</td> | <td>runs weekly, complains quarterly</td> | ||
<td> </td> | <td> </td> | ||
<td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
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<td>runs weekly, complains quarterly</td> | <td>runs weekly, complains quarterly</td> | ||
<td> </td> | <td> </td> | ||
<td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
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<td>checkGbibMd5.sh compares the md5sum of gbibBeta.zip on dev with the sum for gbib.zip on genome-store, complaining if they don't match (and it's not during final build)</td> | <td>checkGbibMd5.sh compares the md5sum of gbibBeta.zip on dev with the sum for gbib.zip on genome-store, complaining if they don't match (and it's not during final build)</td> | ||
<td>runs weekly on Thursday</td> | <td>runs weekly on Thursday</td> | ||
<td> </td> | <td>Brian, Steve, Jonathan</td> | ||
<td>Brian, Steve, Jonathan</td> | <td>Brian, Steve, Jonathan</td> | ||
<td>-</td> | <td>-</td> | ||
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<td>Curl of http://genomewiki.ucsc.edu/index.php/Assembly_Hubs to test Public Wiki is accessible, output only if no response.</td> | <td>Curl of http://genomewiki.ucsc.edu/index.php/Assembly_Hubs to test Public Wiki is accessible, output only if no response.</td> | ||
<td>hourly</td> | <td>hourly</td> | ||
<td> </td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>-</td> | <td>-</td> | ||
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<td>run ReleaseLog script (this requires a copy of the kent repository)</td> | <td>run ReleaseLog script (this requires a copy of the kent repository)</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td>Galt | <td>Galt</td> | ||
<td>Galt</td> | |||
<td>Galt</td> | <td>Galt</td> | ||
</tr> | </tr> | ||
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<td>back up the qapushq</td> | <td>back up the qapushq</td> | ||
<td>every 30 minutes during the work day/week</td> | <td>every 30 minutes during the work day/week</td> | ||
<td> </td> | <td>Galt</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
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<td>update sla.html whenever we have RR downtime</td> | <td>update sla.html whenever we have RR downtime</td> | ||
<td>hopefully, not much!</td> | <td>hopefully, not much!</td> | ||
<td> </td> | <td>Steve, Luvina</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
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<td>update crontab in genecats/qa/crontabs/*.crontab (and [http://genomewiki.cse.ucsc.edu/genecats/index.php/Updating_QA_crontabs log in as qateam and restart the qateam crontab] with updates)</td> | <td>update crontab in genecats/qa/crontabs/*.crontab (and [http://genomewiki.cse.ucsc.edu/genecats/index.php/Updating_QA_crontabs log in as qateam and restart the qateam crontab] with updates)</td> | ||
<td>as needed</td> | <td>as needed</td> | ||
<td> </td> | <td>Brian</td> | ||
<td>Jonathan</td> | <td>Jonathan</td> | ||
<td>Pauline, Jonathan</td> | <td>Pauline, Jonathan</td> | ||
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<td>update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address</td> | <td>update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address</td> | ||
<td>rarely</td> | <td>rarely</td> | ||
<td> </td> | <td>Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Bob</td> | <td>Bob</td> | ||
Revision as of 22:36, 3 September 2015
| task | frequency | who NOW (starting Sept '15) | who Aug '14 - Aug '15 | who Aug '13 - Jul '14 | who before |
|---|---|---|---|---|---|
| from qateam cron | |||||
| ask Galt/Jim about blat updates | 3x per year | Steve, Brian | Steve, Jonathan | Pauline, Steve, Jonathan | Pauline, Steve, Jonathan |
| Respond to items on the broken links report: Check to make sure that broken links reported are actually broken. If so, fix the link if it is clear what the new link should be and push to the RR. If not, contact the appropriate person at the web site in question to find out what the new link should be. | daily | Cathy | Matt | Matt | Steve |
| Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report. | weekly | Matt | Matt | Luvina | Steve |
| receive output from hgTracksRandom cron; alert admins to problems | as needed | many: kuhn, brianlee, braney, luvina, gary, ann, steve, jcasper, matt | many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt | many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt | many: kuhn, rhead, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper |
| receive output from gbLoaded cron job and alert braney if anything seems very outdated | daily, problems every 3-6 months | Steve, Luvina | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| receive output from showProcesslist.csh | daily, no action | Steve, Matt | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job) | weekly | Steve, Matt | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| get an email from backupCentral.csh each month (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834) | monthly | Steve, Brian | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| receive an email on additions and subtractions to files in /gbdb on hgnfs1 | daily | Steve, Luvina | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| receive an email from cron if qateam DailySandboxUpdate fails | daily | Steve, Brian | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| receive output from checkMetaAday.csh; alert (steve, matt) if anything is out of sync (compares hgcentralbeta to hgcentral for db of the day) | daily | Cathy | Matt | Matt | Luvina |
| receive output from syncAday.csh; alert (steve, matt) if anything is out of sync (checks that tables are in sync between beta and RR for database of the day) | daily | Brian | Brian | Brian | Luvina |
| get output from checkGenomeMysql | daily | Steve, Matt | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| hubPublicCheck complains when the hubPublic table doesn't have the same strings as the actual hub.txt file. (NOTE: To run only on Beta hubs requires these declarations: export HGDB_CONF=$HOME/.hg.conf.beta and SHELL=/bin/sh ) | runs daily, complains rarely? | Brian | Brian | Brian | braney |
| omimWrapper.sh checks for new OMIM data and downloads and loads it into hgwdev if so | runs weekly, complains bi-weekly | braney | braney | braney | |
| omimUploadWrapper.sh uploads the OMIM tables to OMIM | runs weekly, complains rarely | braney | braney | braney | |
| decipherWrapper.sh checks for new DECIPHER data and downloads and loads it into hgwdev if so | runs weekly, complains monthly | braney | braney | braney | |
| iscoWrapper.sh checks for new ISCA data and downloads and loads it into hgwdev if so | runs weekly, complains monthly | braney | braney | braney | |
| gwasWrapper.sh checks for new GWAS data and downloads and loads it into hgwdev if so | runs weekly, complains quarterly | braney | braney | braney | |
| geneReviewsWrapper.sh checks for new GeneReviews data and downloads and loads it into hgwdev if so | runs weekly, complains quarterly | braney | braney | braney | |
| sends a reminder to check the list of folks who have mirror sites. This list is created by a script of Hiram's and located here: http://genome-test.cse.ucsc.edu/admin/tools/useCount.html. The information comes from the phoneHome program in the CGIs. Sometimes companies set up mirrors, which is not OK. | monthly | Brian | Matt | Pauline | Ann |
| checkGbibMd5.sh compares the md5sum of gbibBeta.zip on dev with the sum for gbib.zip on genome-store, complaining if they don't match (and it's not during final build) | runs weekly on Thursday | Brian, Steve, Jonathan | Brian, Steve, Jonathan | - | - |
| Curl of http://genomewiki.ucsc.edu/index.php/Assembly_Hubs to test Public Wiki is accessible, output only if no response. | hourly | Brian | Brian | - | - |
| from build cron | |||||
| receive cron output for tableDescriptions build errors | rare | Steve, Luvina | Pauline, Matt | Brooke, Pauline | |
| from galt's cron | |||||
| run ReleaseLog script (this requires a copy of the kent repository) | daily | Galt | Galt | Galt | Galt |
| back up the qapushq | every 30 minutes during the work day/week | Galt | Galt | Galt | Galt |
| non-cron jobs | |||||
| Check old forum (http://redmine.soe.ucsc.edu/forum/index.php) for MLQs that may have slipped through the cracks: Check to make sure that the last response for every ticket came from one of us. If not, look it up in redmine to ensure that A) there is indeed a redmine ticket for it, and B) it has been responded to. If not, notify the appropriate MLM with as much information about the MLQ as possible. | weekly | Luvina | Luvina | Luvina | Steve |
| update sla.html whenever we have RR downtime | hopefully, not much! | Steve, Luvina | Steve, Jonathan | Steve, Jonathan | Brooke, Pauline |
| update crontab in genecats/qa/crontabs/*.crontab (and log in as qateam and restart the qateam crontab with updates) | as needed | Brian | Jonathan | Pauline, Jonathan | Brooke, Pauline |
| update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address | rarely | Matt | Matt | Bob | Ann |
| ENCODE | |||||
| Check genome-preview with Selenium test, ensures various big ENCODE tracks are accessible, and that machine is still running | weekly | Brian | Brian | Brian | Brian |
| Cronjob reports checkUrlsInTable hg38 wgEncodeCell (likely infrequent results) | weekly | Brian | Brian | Brian | Brian |
