Minimal browser: Difference between revisions
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(Created page with "For browser for a new organism (not an update to an existing browser), at least these tracks must exist: * sequence * repeat masker * gold/gap assembly tracks * genbank RNA & ES...") |
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* 3-8-way multiple alignment | * 3-8-way multiple alignment | ||
* Self Chain track for "finished" assemblies (e.g. human, mouse, zebrafish) | * Self Chain track for "finished" assemblies (e.g. human, mouse, zebrafish) | ||
[[Category:Browser QA]] | |||
[[Category:Browser Development]] | |||
Revision as of 21:32, 8 October 2012
For browser for a new organism (not an update to an existing browser), at least these tracks must exist:
- sequence
- repeat masker
- gold/gap assembly tracks
- genbank RNA & EST (xenoRNA if native RefSeq is sparse)
- BLAT/PCR servers
- CPG Islands
- Genscan
And here's a list of tracks for a "pretty good" browser (these are strongly recommended if it's going to be part of a multiple alignment):
- all of the "minimal" tracks listed above
- Transmap (mapping gene set from closest well-annotated organism)
- ENSEMBL Genes (if available)
- Human Proteins
- Human chain/net (at least human, if not others)
- 3-8-way multiple alignment
- Self Chain track for "finished" assemblies (e.g. human, mouse, zebrafish)
