Minimal browser: Difference between revisions
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* Genscan | * Genscan | ||
* Augustus Genes | * Augustus Genes | ||
* Microsatellites | |||
And here's a list of tracks for a "pretty good" browser (these are strongly recommended if it's going to be part of a multiple alignment): | And here's a list of tracks for a "pretty good" browser (these are strongly recommended if it's going to be part of a multiple alignment): | ||
Revision as of 18:40, 22 June 2015
For browser for a new organism (not an update to an existing browser), at least these tracks must exist:
- sequence
- repeat masker
- gold/gap assembly tracks
- genbank native mRNAs & ESTs (if available; see /cluster/data/genbank/data/organism.lst for counts)
- Other RefSeq (xenoRefGene)
- BLAT/PCR servers
- CPG Islands
- Genscan
- Augustus Genes
- Microsatellites
And here's a list of tracks for a "pretty good" browser (these are strongly recommended if it's going to be part of a multiple alignment):
- all of the "minimal" tracks listed above
- Transmap (mapping gene set from closest well-annotated organism)
- ENSEMBL Genes (if available)
- Human Proteins
- Human chain/net (at least human, if not others)
- 3-8-way multiple alignment
- Self Chain track for "finished" assemblies (e.g. human, mouse, zebrafish)
