Minimal browser: Difference between revisions
From Genecats
Jump to navigationJump to search
(added categories) |
(changed genbank tracks required per discussion w/ braney and jim (also http://redmine.soe.ucsc.edu/issues/7668)) |
||
| Line 4: | Line 4: | ||
* repeat masker | * repeat masker | ||
* gold/gap assembly tracks | * gold/gap assembly tracks | ||
* genbank | * genbank mRNAs & ESTs (if available; see /data/genbank/data/organism.lst for counts) | ||
* Other RefSeq (xenoRefGene) | |||
* BLAT/PCR servers | * BLAT/PCR servers | ||
* CPG Islands | * CPG Islands | ||
Revision as of 19:30, 11 October 2012
For browser for a new organism (not an update to an existing browser), at least these tracks must exist:
- sequence
- repeat masker
- gold/gap assembly tracks
- genbank mRNAs & ESTs (if available; see /data/genbank/data/organism.lst for counts)
- Other RefSeq (xenoRefGene)
- BLAT/PCR servers
- CPG Islands
- Genscan
And here's a list of tracks for a "pretty good" browser (these are strongly recommended if it's going to be part of a multiple alignment):
- all of the "minimal" tracks listed above
- Transmap (mapping gene set from closest well-annotated organism)
- ENSEMBL Genes (if available)
- Human Proteins
- Human chain/net (at least human, if not others)
- 3-8-way multiple alignment
- Self Chain track for "finished" assemblies (e.g. human, mouse, zebrafish)
