ENCODE Pre-QA

Start at the more generic Pre-QA page, then return to this page for specifics.

ENCODE QA wiki

The ENCODE QA wiki page is where we keep the step-by-step instructions for QAing an ENCODE track. For pre-QA, you'll work on the hgTrackUi and Files (except 8.1.1) sections.

Pre-QA pushQ Entry

Follow the Review PushQ Entry wiki section

• skip making sure that the Notes file exists

Pre-QA hgTrackUi

Follow the hgTrackUi wiki section (content = most important, jury still out on functionality)

Content

• skip Labels section

Functionality

• Config Settings of Views: skip "Check that expId is hidden in "..." on hgwbeta. If it isn't, there is an issue."
• MetaData: skip "in dense, default fixed range should result in meaningful banding at full chromosome (not all gray)"
• Links: skip "...where applicable, are relative"

Pre-QA Files

Follow the Files wiki section,

• skip the File Count sub-section.

Update Redmine ticket & Get fixes

instructions here

Note Pre-QA Pass in PushQ and Redmine

instructions here