Ensembl data load: Difference between revisions
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(New page: == Load Repeatmasker file == * Create a config file <code> [RepeatMask] db=repbase db_version=0129 db_file=repbase program=RepeatMask program_version=3.1.8 program_file=/path/to/repmasker...) |
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== Load Repeatmasker file == | == Load Repeatmasker file == | ||
* Create a config file | * Create a config file | ||
< | <source lang="text"> | ||
[RepeatMask] | [RepeatMask] | ||
db=repbase | db=repbase | ||
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gff_feature=repeat | gff_feature=repeat | ||
input_id_type=CONTIG | input_id_type=CONTIG | ||
</ | </source> | ||
Revision as of 15:07, 13 September 2010
Load Repeatmasker file
- Create a config file
<source lang="text"> [RepeatMask] db=repbase db_version=0129 db_file=repbase program=RepeatMask program_version=3.1.8 program_file=/path/to/repmasker/RepeatMask parameters=-nolow -species mouse -s module=RepeatMask gff_source=RepeatMask gff_feature=repeat input_id_type=CONTIG </source>
