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| Before testing your CGIs, check the [http://genecats.cse.ucsc.edu/builds/versions.html version notes] for recent changes particular to your CGIs. Pay extra attention to the changes when testing.
| | This page is no longer maintained. |
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| ==hgTracks, hgc==
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| # The TrackCheck robot checks this pretty thoroughly
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| # manually check anything that has been an issue during the past 2-week release cycle
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| ==hgTrackUi==
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| # to check hgTrackUis, start from the "Track/Assebmly Overview" from the QA portal here (don't forget to click on the number of the machine that you are testing)
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| # click on random tracks to check them
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| ==hgGene==
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| # Heather has a robot to check this CGI
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| # test one known gene - click off-site, check entire page
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| # test all possible paths among KG, PB, GS, VG (not that you wind up in mouse VG and need to use "Other Species" to get back to human.)
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| ==hgNear==
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| # use the test protocol for Gene Sorter from the QA portal
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| ==hgCustom==
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| # Test all three methods of entering a CT: typed in, uploaded by file, URL.
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| # Test editing, deleting, adding, updating, HTML docs, etc.
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| # Test adding mutiple tracks at once (multiple tracks in one file, multiple URLs, and pasting in mutiple tracks)
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| # Test CTs in relation to the Table Browser.
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| *See also examples page here: http://genomewiki.ucsc.edu/index.php/Custom_Track_Examples
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| ==hgVisiGene==
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| # test the search box by entering a gene name
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| # check the zoom buttons
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| # check that the "Gene" link opens the correct gene details page, and that that "visiGene" link in that gene details page retrieves the correct images in visiGene
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| # pick an image and check all of the links for that page
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| # for images composed of several smaller images, check that the pane descriptions are displaying correctly (not all panes will have an associated pane description)
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| # (Note: the images from Mahoney are a subset of the MGI/Jax images. The Mahoney images should list two sources and should show two sets of acknowledgements.)
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| ==hgTables==
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| # check all drop-downs
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| # press on summary/stats button
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| # do an intersection with a couple of different output formats
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| # make sure filtering is functioning
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| # create a custom track in the browser
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| # check all output formats
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| # try sending output to Galaxy and GREAT; make sure checkboxes stay checked when applying filters, etc.
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| # do a subtrack merge (select a table from a composite track to get the option)
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| # do a correlation
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| # try defining regions
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| ==hgPal==
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| # check a "Protein FASTA" click-through from a UCSC Gene details page
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| # check a "CDS FASTA" click-through from a RefSeq Genes details page
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| # using the Table Browser, choose "CDS FASTA" as the output format (this should work for any [http://genome.ucsc.edu/FAQ/FAQformat.html#format9 genePred] track)
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| # check that different settings give expected results
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| ==hgBlat==
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| # perform both a nucleotide and a protein search with default settings
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| # make sure colors listed in description section are right
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| # zoom in on an alignment and test "View details of parts of alignment within browser window"
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| # try different sorts and output types
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| # make sure all the buttons work, including uploading a file
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| # try uploading a file with too many bases or too many queries and verify error message
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| ==hgPcr==
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| # test some perfectly matching primers, including a pair on the negative strand
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| # find a pair of primers that shouldn't match UCSC Genes and test that they don't
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| # vary settings and input primers for several assemblies and see if results make sense
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| # for human and mouse browsers, test the "UCSC Genes" target. Check that UI functions as expected
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| # check that the UI functions as expected for regular primers as well
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| ==hgLiftOver, hgConvert==
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| # Choose an assembly and go to hgTracks
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| # Hit "Convert" in the blue bar at the top of the page
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| # Compare the output to the same conversion using liftOver:
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| # LiftOver is at Home -> Utilities -> Batch Coordinate Conversion (liftOver)
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| # Test both position and BED format
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| # Test a variety of settings
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| # Try converting multiple positions at once
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| # Try uploading a file
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| ==pbGateway, pbGlobal, pbTracks==
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| # general testing; click around
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| # enter a protein symbol
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| # review results page
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| # click into pbGlobal and check display
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| ==hgSession==
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| #check that a new session can be saved
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| #check that old sessions are still there
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| #delete a session
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| #check browser & email button; click the title of session & make sure you can save changes to the description
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| #try loading a session via a file and via a URL
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| #logout and try to load a session that can be shared and one that can't be shared
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| ==hgGenome==
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| #find it by going Home -> Genome Graphs
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| #upload a dataset from a file
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| #upload a data set from a URL
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| #import data from a track
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| #change some configurations
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| #check that "browse regions" & "sort genes" work
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| #check the correlate button
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| Some good genome graph data for testing: http://hgwdev.cse.ucsc.edu/~rhead/genomeGraphsWithColumns
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| ==cartDump, cartReset==
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| # check cart
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| # reset cart
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| # check cart again
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| See also: cart test protocol
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| ==hgApi==
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| This CGI is responsible for the metadata "..." links on the hgTrackUi page and the "metadata" links on the hgc details pages of composite tracks with metadata. | |
| # click on a "..." link and check that it opens up - no need to check the content. You only need to test one "..." link - if hgApi is broken, it will break all "..." links.
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| # This CGI can also be tested by clicking on a "meatadata" link in hgc details and check that it opens up - no need to check the content.
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| Probably doing 1 or 2 is sufficient, but it is a good habit to have the testers of hgTrackUi and hgc check 1 and 2 respectively, that way we are double covered in case one person forgets.
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| ==hgEncodeVocab==
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| # Go to an ENCODE track, most matrix headers should be links. Click on them, should take you to a page with a row of info about the term.
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| # Go to a couple of these pages and check that the sections are displaying (these pages use hgEncodeVocab to display the info on them):
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| #* [http://hgw2.cse.ucsc.edu/ENCODE/otherTerms.html Registered Variables]
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| #* [http://hgw2.cse.ucsc.edu/ENCODE/antibodies.html Antibodies]
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| #* [http://hgw2.cse.ucsc.edu/ENCODE/cellTypes.html Human Cell Types]
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| #* [http://hgw2.cse.ucsc.edu/ENCODE/cellTypesMouse.html Mouse Cell Types]
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| [[Category:Browser QA]]
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