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| So you want to have your own copies of the binaries and your own hgwdev-user.cse.ucsc.edu browser? Here is a walkthrough:
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| 0. Request a "virtual space" from the cluster-admins.
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| This includes, among other things, adding a block to the file /usr/local/apache/conf/httpd.conf | |
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| <VirtualHost 128.114.50.189>
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| ServerName hgwdev-kayla.cse.ucsc.edu
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| ServerAlias hgwdev-kayla
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| ScriptAlias /cgi-bin/ "/usr/local/apache/cgi-bin-kayla/"
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| </VirtualHost>
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| 1. Populate my /usr/local/apache/cgi-bin-kayla/ directory for the first time by doing the following:
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| From my home directory on hgwdev /cluster/home/kayla I type the following things:
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| [kayla@hgwdev ~]$cd kent
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| [kayla@hgwdev ~/kent]$ cvsup
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| [kayla@hgwdev ~/kent]$ cd src
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| [kayla@hgwdev src]$ make libs
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| [kayla@hgwdev src]$ cd hg
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| [kayla@hgwdev hg]$ make cgi
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| [kayla@hgwdev hg]$ cd makeDb/trackDb
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| [kayla@hgwdev trackDb]$ make update
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| I now have my own compiled version of the cgis.
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| 2. Edit my /usr/local/apache.cgi-bin-kayla/hg.conf
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| <ul>
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| <li>You can copy this file from another user, but make sure to replace their name with your name in the appropriate (4) places.
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| <li>Pay attention to the following lines (they will need to be edited or added):
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| central.host=localhost
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| central.domain=hgwdev-kayla.cse.ucsc.edu
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| central.cookie=hguid.hgwdev-kayla
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| backupcentral.domain=hgwdev-kayla.ucsc.edu
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| <li>Also play with the line:
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| browser.background=/images/floret.jpg to change what background your browser displays.
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| here is a generic [[floret.jpg]] file you can download and edit.
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| </ul>
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| 3. Keep it current:
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| Here is a script that you can copy and paste to make your binaries every night:
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| #!/bin/tcsh
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| if ($HOST != hgwdev) then
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| echo "\n this must be run from hgwdev!\n"
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| endif
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| cd ~/kent/src
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| make clean > dev/null
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| cd ~/kent
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| /cluster/bin/scripts/cvsup | mail -s 'CVS update report on kent tree' kayla
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| cd ~/kent/src
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| make libs
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| cd ~/kent/src/hg
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| make cgi
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| cd ~/kent/src/hg/makeDb/trackDb
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| make update
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| 4. Automate it:
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| Set up a cronjob:
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