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| This script was written by Angie. | | This page is no longer maintained. |
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| It is a script which assists developers in creating a qapushq table for a
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| new genome db's push queue.
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| Suggested usage:
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| makePushQSql.pl $db > ~/qapushq.$db.sql
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| It prints SQL commands (that look a lot like hgsqldump output) to
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| stdout. It's best if you redirect the output to a file, edit it to
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| make sure it's all correct, and then hgsql it on hgwbeta. After that
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| point, use the web Push Queue tool to make any further changes.
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| When it can't figure out where a table belongs, or can't find an
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| expected download file, it prints a message to stderr. When done, it
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| prints more editing suggestions.
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| It uses trackDb and the joinableFields program to guess which tables
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| belong to which tracks. However, sometimes there are a couple levels
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| of indirection in all.joiner, and sometimes a table might be missing
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| from all.joiner, but again it will alert you.
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| It does not look very hard for /gbdb/ files that may be associated
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| with a track, but it provides some SQL commands to run on hgwdev to
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| list extFile and wiggle table files in $db, and then you can edit
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| those in.
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| Other known limitations:
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| - no concept of composite tracks (but I think those are still
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| somewhat rare in initial releases)
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| - does not look for goldenPath/ stuff aside from bigZips, database
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| and chromosomes -- I might add something for chains and nets.
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| This script also makes a single entry in the main pushQ table, which alerts
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| QA to the fact that there is a new assembly sub-pushQ.
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| [[Category:Browser QA]]
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