PanTro3 conservation alignment: Difference between revisions
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(finished rn4, correct danRer version) |
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<TD>Baylor HGSC v. 3.4</TD> | <TD>Baylor HGSC v. 3.4</TD> | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD ALIGN=RIGHT>N/A</TD><TD> | <TD ALIGN=RIGHT>N/A</TD><TD>2011-03-17</TD><TD ALIGN=RIGHT>30.350%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>10</TH><TH>monDom5</TH><TD>Monodelphis<BR>domestica</TD><TD>Opossum</TD> | <TH>10</TH><TH>monDom5</TH><TD>Monodelphis<BR>domestica</TD><TD>Opossum</TD> | ||
| Line 79: | Line 79: | ||
<TD ALIGN=RIGHT>2007-01-02</TD><TD>2011-03-02</TD><TD ALIGN=RIGHT>4.557%</TD> | <TD ALIGN=RIGHT>2007-01-02</TD><TD>2011-03-02</TD><TD ALIGN=RIGHT>4.557%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>12</TH><TH> | <TH>12</TH><TH>danRer7</TH><TD>Danio<BR>rerio</TD><TD>Zebrafish</TD> | ||
<TD> | <TD>Jul. 2010 (Zv9/danRer7)</TD> | ||
<TD>Wellcome Trust Sanger Institute, | <TD>Wellcome Trust Sanger Institute, Zv9 assembly (GCA_000002035.2)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2010-12-03</TD> | ||
<TD ALIGN=RIGHT>N/A</TD><TD> | <TD ALIGN=RIGHT>N/A</TD><TD>2011-03-01</TD><TD ALIGN=RIGHT>2.558%</TD> | ||
</TR> | </TR> | ||
</TABLE> | </TABLE> | ||
Revision as of 00:38, 18 March 2011
| UCSC db name |
Scientific name |
Common name |
assembly date |
source version |
Repeat Masker |
Window Masker |
chain on panTro3 |
% of panTro3 matched (chainLink table) |
|
|---|---|---|---|---|---|---|---|---|---|
| 01 | panTro3 | Pan troglodytes | Chimp | Oct. 2010 (CGSC 2.1.3/panTro3) | CGSC 2.1.3 (GCA_000001515.3) | 2011-02-22 | N/A | N/A | N/A |
| 02 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | N/A | 2011-02-23 | 95.597% |
| 03 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | N/A | 2011-03-06 | 89.586% |
| 04 | rheMac2 | Macaca mulatta | Rhesus | Jan. 2006 (MGSC Merged 1.0/rheMac2) | Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 | 2009-08-15 | N/A | 2011-03-06 | 81.342% |
| 05 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | N/A | 2011-03-06 | 69.662% |
| 06 | equCab2 | Equus caballus | Horse | Sep. 2007 (Broad/equCab2) | Broad Institute EquCab2 | 2009-08-14 | N/A | 2011-03-06 | 56.504% |
| 07 | canFam2 | Canis lupus familiaris | Dog | May 2005 (Broad/canFam2) | Broad Institute v. 2.0 | 2009-08-15 | N/A | 2011-03-06 | 51.588% |
| 08 | mm9 | Mus musculus | Mouse | July 2007 (NCBI37/mm9) | NCBI Build 37 | 2009-08-14 | N/A | 2011-03-07 | 32.044% |
| 09 | rn4 | Rattus norvegicus | Rat | Nov. 2004 (Baylor 3.4/rn4) | Baylor HGSC v. 3.4 | 2009-08-15 | N/A | 2011-03-17 | 30.350% |
| 10 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2011-03-11 | 13.743% |
| 11 | galGal3 | Gallus gallus | Chicken | May 2006 (WUGSC 2.1/galGal3) | Chicken Genome Sequencing Consortium May 2006 release | 2009-08-15 | 2007-01-02 | 2011-03-02 | 4.557% |
| 12 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute, Zv9 assembly (GCA_000002035.2) | 2010-12-03 | N/A | 2011-03-01 | 2.558% |
