PanTro3 conservation alignment: Difference between revisions
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==see also== | |||
<UL> | |||
<LI>[[PanTro3 Genome size statistics]]</LI> | |||
<LI>[[PanTro3 conservation lastz parameters]]</LI> | |||
<LI>[[Hg19 Genome size statistics]]</LI> | |||
<LI>[[Hg19 conservation lastz parameters]]</LI> | |||
<LI>[[Hg18 44way alignment]]</LI> | |||
<LI>[[Genome size statistics|Hg18 genome size statistics]]</LI> | |||
<LI>[[Hg18 44way blastz parameters]]</LI> | |||
</UL> | |||
==do not edit== | |||
This table is automatically generated off-line from the UCSC databases. Please do | |||
not edit it. | |||
<TABLE BORDER=1> | <TABLE BORDER=1> | ||
<TR> | <TR> | ||
Revision as of 17:29, 18 March 2011
see also
- PanTro3 Genome size statistics
- PanTro3 conservation lastz parameters
- Hg19 Genome size statistics
- Hg19 conservation lastz parameters
- Hg18 44way alignment
- Hg18 genome size statistics
- Hg18 44way blastz parameters
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| UCSC db name |
Scientific name |
Common name |
assembly date |
source version |
Repeat Masker |
Window Masker |
chain on panTro3 |
% of panTro3 matched (chainLink table) |
|
|---|---|---|---|---|---|---|---|---|---|
| 01 | panTro3 | Pan troglodytes | Chimp | Oct. 2010 (CGSC 2.1.3/panTro3) | CGSC 2.1.3 (GCA_000001515.3) | 2011-02-22 | N/A | N/A | N/A |
| 02 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | N/A | 2011-02-23 | 95.597% |
| 03 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | N/A | 2011-03-06 | 89.586% |
| 04 | rheMac2 | Macaca mulatta | Rhesus | Jan. 2006 (MGSC Merged 1.0/rheMac2) | Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 | 2009-08-15 | N/A | 2011-03-06 | 81.342% |
| 05 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | N/A | 2011-03-06 | 69.662% |
| 06 | equCab2 | Equus caballus | Horse | Sep. 2007 (Broad/equCab2) | Broad Institute EquCab2 | 2009-08-14 | N/A | 2011-03-06 | 56.504% |
| 07 | canFam2 | Canis lupus familiaris | Dog | May 2005 (Broad/canFam2) | Broad Institute v. 2.0 | 2009-08-15 | N/A | 2011-03-06 | 51.588% |
| 08 | mm9 | Mus musculus | Mouse | July 2007 (NCBI37/mm9) | NCBI Build 37 | 2009-08-14 | N/A | 2011-03-07 | 32.044% |
| 09 | rn4 | Rattus norvegicus | Rat | Nov. 2004 (Baylor 3.4/rn4) | Baylor HGSC v. 3.4 | 2009-08-15 | N/A | 2011-03-17 | 30.350% |
| 10 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2011-03-11 | 13.743% |
| 11 | galGal3 | Gallus gallus | Chicken | May 2006 (WUGSC 2.1/galGal3) | Chicken Genome Sequencing Consortium May 2006 release | 2009-08-15 | 2007-01-02 | 2011-03-02 | 4.557% |
| 12 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute, Zv9 assembly (GCA_000002035.2) | 2010-12-03 | N/A | 2011-03-01 | 2.558% |
