PanTro3 conservation alignment: Difference between revisions

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==see also==
<UL>
<LI>Chimp 12-way [[PanTro3 Genome size statistics]]</LI>
<LI>Chimp 12-way [[PanTro3 conservation lastz parameters]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
</UL>
==do not edit==
This table is automatically generated off-line from the UCSC databases.  Please do
not edit it.
<TABLE BORDER=1>
<TABLE BORDER=1>
<TR>
<TR>
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   <TD>Baylor HGSC v. 3.4</TD>
   <TD>Baylor HGSC v. 3.4</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2011-03-17</TD><TD ALIGN=RIGHT>30.350%</TD>
</TR><TR>
</TR><TR>
   <TH>10</TH><TH>monDom5</TH><TD>Monodelphis<BR>domestica</TD><TD>Opossum</TD>
   <TH>10</TH><TH>monDom5</TH><TD>Monodelphis<BR>domestica</TD><TD>Opossum</TD>
Line 79: Line 92:
   <TD ALIGN=RIGHT>2007-01-02</TD><TD>2011-03-02</TD><TD ALIGN=RIGHT>4.557%</TD>
   <TD ALIGN=RIGHT>2007-01-02</TD><TD>2011-03-02</TD><TD ALIGN=RIGHT>4.557%</TD>
</TR><TR>
</TR><TR>
   <TH>12</TH><TH>danRer6</TH><TD>Danio<BR>rerio</TD><TD>Zebrafish</TD>
   <TH>12</TH><TH>danRer7</TH><TD>Danio<BR>rerio</TD><TD>Zebrafish</TD>
   <TD>Dec.&nbsp;2008&nbsp;(Zv8/danRer6)</TD>
   <TD>Jul.&nbsp;2010&nbsp;(Zv9/danRer7)</TD>
   <TD>Wellcome Trust Sanger Institute, Zv8 assembly (CAAK00000000.5)</TD>
   <TD>Wellcome Trust Sanger Institute, Zv9 assembly (GCA_000002035.2)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2010-12-03</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2011-03-01</TD><TD ALIGN=RIGHT>2.558%</TD>
</TR>
</TR>
</TABLE>
</TABLE>

Latest revision as of 22:37, 18 May 2011

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

  UCSC
db name		 Scientific
name		 Common
name		 assembly
date		 source
version		 Repeat
Masker		 Window
Masker		 chain
on panTro3		 % of panTro3
matched
(chainLink table)
01panTro3Pan
troglodytes		Chimp Oct. 2010 (CGSC 2.1.3/panTro3) CGSC 2.1.3 (GCA_000001515.3) 2011-02-22 N/AN/AN/A
02hg19Homo
sapiens		Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 N/A2011-02-2395.597%
03ponAbe2Pongo
pygmaeus
abelii		Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 N/A2011-03-0689.586%
04rheMac2Macaca
mulatta		Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 2009-08-15 N/A2011-03-0681.342%
05calJac3Callithrix
jacchus		Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 N/A2011-03-0669.662%
06equCab2Equus
caballus		Horse Sep. 2007 (Broad/equCab2) Broad Institute EquCab2 2009-08-14 N/A2011-03-0656.504%
07canFam2Canis
lupus
familiaris		Dog May 2005 (Broad/canFam2) Broad Institute v. 2.0 2009-08-15 N/A2011-03-0651.588%
08mm9Mus
musculus		Mouse July 2007 (NCBI37/mm9) NCBI Build 37 2009-08-14 N/A2011-03-0732.044%
09rn4Rattus
norvegicus		Rat Nov. 2004 (Baylor 3.4/rn4) Baylor HGSC v. 3.4 2009-08-15 N/A2011-03-1730.350%
10monDom5Monodelphis
domestica		Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-142011-03-1113.743%
11galGal3Gallus
gallus		Chicken May 2006 (WUGSC 2.1/galGal3) Chicken Genome Sequencing Consortium May 2006 release 2009-08-15 2007-01-022011-03-024.557%
12danRer7Danio
rerio		Zebrafish Jul. 2010 (Zv9/danRer7) Wellcome Trust Sanger Institute, Zv9 assembly (GCA_000002035.2) 2010-12-03 N/A2011-03-012.558%
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