CalJac3 conservation alignment: Difference between revisions
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<LI>13-way [[Marmoset_calJac3_13-way_size_statistics|CalJac3 Genome size statistics]]</LI> | <LI>Marmoset 13-way [[Marmoset_calJac3_13-way_size_statistics|CalJac3 Genome size statistics]]</LI> | ||
<LI>13-way [[CalJac3 conservation lastz parameters]]</LI> | <LI>Marmoset 13-way [[CalJac3 conservation lastz parameters]]</LI> | ||
<LI>all other [[UCSC Multiple Alignments]]</LI> | <LI>all other [[UCSC Multiple Alignments]]</LI> | ||
</UL> | </UL> | ||
Latest revision as of 20:21, 19 May 2011
see also
- Marmoset 13-way CalJac3 Genome size statistics
- Marmoset 13-way CalJac3 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| UCSC db name |
Scientific name |
Common name |
assembly date |
source version |
Repeat Masker |
Window Masker |
chain on calJac3 |
% of calJac3 matched (chainLink table) |
|
|---|---|---|---|---|---|---|---|---|---|
| 01 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | N/A | N/A | N/A |
| 02 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | N/A | 2010-02-12 | 71.893% |
| 03 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | N/A | 2010-02-11 | 73.768% |
| 04 | panTro2 | Pan troglodytes | Chimp | Mar. 2006 (CGSC 2.1/panTro2) | Washington University Build 2 Version 1 | 2009-08-15 | N/A | 2010-02-11 | 72.304% |
| 05 | gorGor2 | Gorilla gorilla gorilla | Gorilla | Aug. 2009 (Sanger 4/gorGor2) | Sanger Institute Aug 2009 (NCBI project 31265) | 2009-11-03 | N/A | 2010-02-23 | 76.343% |
| 06 | rheMac2 | Macaca mulatta | Rhesus | Jan. 2006 (MGSC Merged 1.0/rheMac2) | Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 | 2009-08-15 | N/A | 2010-02-12 | 69.625% |
| 07 | papHam1 | Papio hamadryas | Baboon | Nov. 2008 (Baylor 1.0/papHam1) | Baylor BCM HGSC Pham_1.0 | 2009-09-02 | N/A | 2010-02-18 | 70.053% |
| 08 | tarSyr1 | Tarsius syrichta | Tarsier | Aug. 2008 (Broad/tarSyr1) | Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) | 2009-09-02 | N/A | 2010-02-24 | 46.729% |
| 09 | micMur1 | Microcebus murinus | Mouse lemur | Jun. 2003 (Broad/micMur1) | Broad Institute micMur1 (NCBI project 19967, ABDC00000000) | 2009-09-02 | N/A | 2010-02-21 | 45.726% |
| 10 | otoGar1 | Otolemur garnettii | Bushbaby | Dec. 2006 (Broad/otoGar1) | Broad version 1 (NCBI project 16955, AAQR00000000) | 2009-09-02 | N/A | 2010-02-21 | 42.743% |
| 11 | canFam2 | Canis lupus familiaris | Dog | May 2005 (Broad/canFam2) | Broad Institute v. 2.0 | 2009-08-15 | N/A | 2010-02-14 | 50.766% |
| 12 | mm9 | Mus musculus | Mouse | July 2007 (NCBI37/mm9) | NCBI Build 37 | 2009-08-14 | N/A | 2010-02-14 | 31.310% |
| 13 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2010-02-14 | 7.906% |
