WindowMasker: Difference between revisions
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WindowMasker is a [[denovo repeat finder]] from the NCBI, published in 2006. | WindowMasker is a [[denovo repeat finder]] from the NCBI, published in 2006. | ||
== UCSC Installation == | |||
It was taken from the NCBI C++ Toolkit (Dec. 2005) and installed into | |||
/cluster/bin/x86_64 | |||
the following way: | |||
ssh kolossus | |||
cd /scratch/andy | |||
wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/CURRENT/ncbi_cxx--Dec_31_2005.tar.gz | |||
tar xfz ncbi_cxx--Dec_31_2005.tar.gz | |||
cd ncbi_cxx--Dec_31_2005 | |||
./configure --without-debug --with-optimization --with-projects=src/app/winmasker/windowmasker.lst | |||
cd /scratch/andy/ncbi_cxx--Dec_31_2005/GCC344-Release64/build && make all_p | |||
cd app/winmasker/ | |||
cp windowmasker /cluster/bin/x86_64/ | |||
The README file in src/app/winmasker looks enough like a '''man''' file so | |||
cd /scratch/andy/ncbi_cxx--Dec_31_2005/src/app/winmasker | |||
cp README /cluster/bin/man/man1/winmasker.1 | |||
Revision as of 00:11, 4 April 2006
WindowMasker is a denovo repeat finder from the NCBI, published in 2006.
UCSC Installation
It was taken from the NCBI C++ Toolkit (Dec. 2005) and installed into
/cluster/bin/x86_64
the following way:
ssh kolossus cd /scratch/andy wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/CURRENT/ncbi_cxx--Dec_31_2005.tar.gz tar xfz ncbi_cxx--Dec_31_2005.tar.gz cd ncbi_cxx--Dec_31_2005 ./configure --without-debug --with-optimization --with-projects=src/app/winmasker/windowmasker.lst cd /scratch/andy/ncbi_cxx--Dec_31_2005/GCC344-Release64/build && make all_p cd app/winmasker/ cp windowmasker /cluster/bin/x86_64/
The README file in src/app/winmasker looks enough like a man file so
cd /scratch/andy/ncbi_cxx--Dec_31_2005/src/app/winmasker cp README /cluster/bin/man/man1/winmasker.1
