How to submit a new genome: Difference between revisions

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To get a new genome assembly hosted by genome browsers such as [http://genome.ucsc.edu/ UCSC] or [http://www.ensembl.org/ Ensembl], register your sequencing project at NCBI and deposit your sequence with their procedures. When it shows up in the [ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/ NCBI FTP] download directories we can consider it for admission to the genome browser. Please note, our focus here at UCSC is on vertebrate genomes.
To have a new genome assembly hosted by genome browsers such as [http://genome.ucsc.edu/ UCSC] or [http://www.ensembl.org/ Ensembl], you must first register your sequencing project at NCBI and deposit your sequence in GenBank following their procedures. When the assembly shows up in the [ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/ NCBI FTP] download directories, we will consider it for admission to the Genome Browser. Due to funding limitations, UCSC is able to accommodate only certain assembly requests. Our primary focus is on vertebrate genomes that will contribute to our exploration and analysis of the human genome.


NCBI genome project WEB resources:
NCBI genome project WEB resources:
[http://www.ncbi.nlm.nih.gov/genome/assembly/ Genome Assembly]
  [http://www.ncbi.nlm.nih.gov/genomes/mpfsubmission.cgi Genome Project] submission form.
  [http://www.ncbi.nlm.nih.gov/genomes/mpfsubmission.cgi Genome Project] submission form.
  [http://www.ncbi.nlm.nih.gov/projects/GenomeSubmit/genome_submit.cgi Submitting genome] sequence files.
  [http://www.ncbi.nlm.nih.gov/projects/GenomeSubmit/genome_submit.cgi Submitting genome] sequence files.
  [http://www.ncbi.nlm.nih.gov/Genbank/wgs.html WGS assembly] information.
  [http://www.ncbi.nlm.nih.gov/Genbank/wgs.html WGS assembly] information.
  [http://www.ncbi.nlm.nih.gov/genome/assembly/agp/AGP_Specification.shtml AGP] Specification for assembled genomes.
  [http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification_v1.1.shtml AGP] Specification for assembled genomes.

Latest revision as of 18:50, 27 January 2012

To have a new genome assembly hosted by genome browsers such as UCSC or Ensembl, you must first register your sequencing project at NCBI and deposit your sequence in GenBank following their procedures. When the assembly shows up in the NCBI FTP download directories, we will consider it for admission to the Genome Browser. Due to funding limitations, UCSC is able to accommodate only certain assembly requests. Our primary focus is on vertebrate genomes that will contribute to our exploration and analysis of the human genome.

NCBI genome project WEB resources: 

Genome Assembly
Genome Project submission form.
Submitting genome sequence files.
WGS assembly information.
AGP Specification for assembled genomes.
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