Mm10 Genome size statistics: Difference between revisions

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Line 47: Line 47:
<TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat 02]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4 rn4]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/16219 02]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5]</TH>
<TH ALIGN=RIGHT>45</TH>
<TH ALIGN=RIGHT>2,739</TH>
   <TD ALIGN=RIGHT>2,834,127,293</TD><TD ALIGN=RIGHT>2,566,294,765</TD>
   <TD ALIGN=RIGHT>2,909,698,938</TD><TD ALIGN=RIGHT>2,572,853,723</TD>
   <TD ALIGN=RIGHT>267,832,528</TD><TD ALIGN=RIGHT>%&nbsp;44.29</TD>
   <TD ALIGN=RIGHT>336,845,215</TD><TD ALIGN=RIGHT>%&nbsp;42.81</TD>
   <TD ALIGN=CENTER>[http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat Rat]</TD><TH ALIGN=CENTER>20X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR06 Rat]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>143002779</TH>
<TH ALIGN=CENTER>154597545</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>54.645%</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>67.353%</TD>
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 03]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH>
  <TH ALIGN=RIGHT>03</TH>
<TH ALIGN=RIGHT>12,483</TH>
  <TH ALIGN=RIGHT>speTri2</TH><TD ALIGN=CENTER COLSPAN=11>to be done</TD>
   <TD ALIGN=RIGHT>2,478,393,770</TD><TD ALIGN=RIGHT>2,311,060,300</TD>
</TR>
   <TD ALIGN=RIGHT>167,333,470</TD><TD ALIGN=RIGHT>%&nbsp;36.27</TD>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 04]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Squirrel]</TD><TH ALIGN=CENTER>495X</TH>
<TH ALIGN=RIGHT>185,042</TH>
<TH ALIGN=CENTER>8192786</TH>
   <TD ALIGN=RIGHT>2,902,270,736</TD><TD ALIGN=RIGHT>1,852,394,361</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>34.217%</TD>
   <TD ALIGN=RIGHT>1,049,876,375</TD><TD ALIGN=RIGHT>%&nbsp;37.31</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Mouse lemur]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>140884</TH>
   <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>26.636%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 05]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 04]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH>
<TH ALIGN=RIGHT>210,053</TH>
<TH ALIGN=RIGHT>210,053</TH>
   <TD ALIGN=RIGHT>2,158,502,098</TD><TD ALIGN=RIGHT>1,844,961,421</TD>
   <TD ALIGN=RIGHT>2,158,502,098</TD><TD ALIGN=RIGHT>1,844,961,421</TD>
Line 75: Line 71:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRO01 Kangaroo rat]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRO01 Kangaroo rat]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>36427</TH>
<TH ALIGN=CENTER>36427</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>19.460%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/67945 06]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/72441 05]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH>
<TH ALIGN=RIGHT>2,685</TH>
<TH ALIGN=RIGHT>4,229</TH>
   <TD ALIGN=RIGHT>2,608,572,064</TD><TD ALIGN=RIGHT>2,477,131,095</TD>
  <TD ALIGN=RIGHT>2,618,204,639</TD><TD ALIGN=RIGHT>2,314,771,103</TD>
   <TD ALIGN=RIGHT>131,440,969</TD><TD ALIGN=RIGHT>%&nbsp;46.69</TD>
  <TD ALIGN=RIGHT>303,433,536</TD><TD ALIGN=RIGHT>%&nbsp;32.31</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Squirrel monkey]</TD><TH ALIGN=CENTER>80X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Naked mole rat]</TD><TH ALIGN=CENTER>90X</TH>
<TH ALIGN=CENTER>18744880</TH>
<TH ALIGN=CENTER>20532749</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>32.339%</TD>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>32.753%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 06]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH>
<TH ALIGN=RIGHT>3,144</TH>
  <TD ALIGN=RIGHT>2,723,219,641</TD><TD ALIGN=RIGHT>2,663,369,733</TD>
  <TD ALIGN=RIGHT>59,849,908</TD><TD ALIGN=RIGHT>%&nbsp;27.53</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Guinea pig]</TD><TH ALIGN=CENTER>6.76X</TH>
<TH ALIGN=CENTER>27942054</TH>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>28.447%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 07]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH>
<TH ALIGN=RIGHT>3,242</TH>
   <TD ALIGN=RIGHT>2,737,490,501</TD><TD ALIGN=RIGHT>2,604,023,284</TD>
   <TD ALIGN=RIGHT>133,467,217</TD><TD ALIGN=RIGHT>%&nbsp;43.74</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Rabbit]</TD><TH ALIGN=CENTER>6.51X</TH>
<TH ALIGN=CENTER>111795807</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.248%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/771 08]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH>
<TH ALIGN=RIGHT>187,558</TH>
  <TD ALIGN=RIGHT>3,445,784,354</TD><TD ALIGN=RIGHT>1,923,624,051</TD>
  <TD ALIGN=RIGHT>1,522,160,303</TD><TD ALIGN=RIGHT>%&nbsp;11.44</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Pika]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>88760</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>14.542%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 09]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH>
<TH ALIGN=RIGHT>150,851</TH>
  <TD ALIGN=RIGHT>3,660,774,957</TD><TD ALIGN=RIGHT>2,137,225,476</TD>
  <TD ALIGN=RIGHT>1,523,549,481</TD><TD ALIGN=RIGHT>%&nbsp;20.43</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tree shrew]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>127888</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>19.766%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/68323 07]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 10]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH>
<TH ALIGN=RIGHT>39,267</TH>
  <TD ALIGN=RIGHT>2,643,978,223</TD><TD ALIGN=RIGHT>2,430,064,805</TD>
  <TD ALIGN=RIGHT>213,913,418</TD><TD ALIGN=RIGHT>%&nbsp;32.64</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFSB00 Naked mole-rat]</TD><TH ALIGN=CENTER>90X</TH>
<TH ALIGN=CENTER>1603177</TH>
  <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>1000</TD>
  <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 08]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH>
<TH ALIGN=RIGHT>93</TH>
<TH ALIGN=RIGHT>93</TH>
   <TD ALIGN=RIGHT>3,137,161,264</TD><TD ALIGN=RIGHT>2,897,310,462</TD>
   <TD ALIGN=RIGHT>3,137,161,264</TD><TD ALIGN=RIGHT>2,897,310,462</TD>
Line 105: Line 128:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 09]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 11]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH>
<TH ALIGN=RIGHT>46,823</TH>
<TH ALIGN=RIGHT>46,823</TH>
   <TD ALIGN=RIGHT>3,029,553,646</TD><TD ALIGN=RIGHT>2,822,760,080</TD>
   <TD ALIGN=RIGHT>3,029,553,646</TD><TD ALIGN=RIGHT>2,822,760,080</TD>
Line 114: Line 137:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/10627 10]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/10627 12]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH>
<TH ALIGN=RIGHT>24,129</TH>
<TH ALIGN=RIGHT>24,129</TH>
   <TD ALIGN=RIGHT>3,309,577,922</TD><TD ALIGN=RIGHT>2,902,338,967</TD>
   <TD ALIGN=RIGHT>3,309,577,922</TD><TD ALIGN=RIGHT>2,902,338,967</TD>
Line 123: Line 146:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu1.0/ 11]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/13975 13]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2]</TH>
<TH ALIGN=RIGHT>17,968</TH>
<TH ALIGN=RIGHT>17,976</TH>
   <TD ALIGN=RIGHT>2,936,035,333</TD><TD ALIGN=RIGHT>2,756,591,777</TD>
   <TD ALIGN=RIGHT>2,936,052,603</TD><TD ALIGN=RIGHT>2,756,609,047</TD>
   <TD ALIGN=RIGHT>179,443,556</TD><TD ALIGN=RIGHT>%&nbsp;50.82</TD>
   <TD ALIGN=RIGHT>179,443,556</TD><TD ALIGN=RIGHT>%&nbsp;51.44</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV00 Gibbon]</TD><TH ALIGN=CENTER>5.6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV01 Gibbon]</TD><TH ALIGN=CENTER>5.6X</TH>
<TH ALIGN=CENTER>22692035</TH>
<TH ALIGN=CENTER>22692035</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>34.132%</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>34.031%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 12]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 14]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH>
<TH ALIGN=RIGHT>55</TH>
<TH ALIGN=RIGHT>55</TH>
   <TD ALIGN=RIGHT>3,446,771,396</TD><TD ALIGN=RIGHT>3,093,543,172</TD>
   <TD ALIGN=RIGHT>3,446,771,396</TD><TD ALIGN=RIGHT>3,093,543,172</TD>
Line 141: Line 164:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 13]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 15]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH>
<TH ALIGN=RIGHT>656,709</TH>
<TH ALIGN=RIGHT>656,709</TH>
   <TD ALIGN=RIGHT>3,179,905,132</TD><TD ALIGN=RIGHT>2,768,536,343</TD>
   <TD ALIGN=RIGHT>3,179,905,132</TD><TD ALIGN=RIGHT>2,768,536,343</TD>
Line 147: Line 170:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT00 Tarsier]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT00 Tarsier]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>12214</TH>
<TH ALIGN=CENTER>12214</TH>
   <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>24.560%</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>24.560%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 14]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 16]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH>
<TH ALIGN=RIGHT>34,103</TH>
<TH ALIGN=RIGHT>34,103</TH>
   <TD ALIGN=RIGHT>2,969,988,180</TD><TD ALIGN=RIGHT>2,639,145,830</TD>
   <TD ALIGN=RIGHT>2,969,988,180</TD><TD ALIGN=RIGHT>2,639,145,830</TD>
Line 159: Line 182:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 15]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 17]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH>
<TH ALIGN=RIGHT>387,374</TH>
<TH ALIGN=RIGHT>387,374</TH>
   <TD ALIGN=RIGHT>2,867,564,654</TD><TD ALIGN=RIGHT>2,741,849,051</TD>
   <TD ALIGN=RIGHT>2,867,564,654</TD><TD ALIGN=RIGHT>2,741,849,051</TD>
Line 165: Line 188:
   <TD ALIGN=CENTER>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Baboon]</TD><TH ALIGN=CENTER>5.3X</TH>
   <TD ALIGN=CENTER>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Baboon]</TD><TH ALIGN=CENTER>5.3X</TH>
<TH ALIGN=CENTER>88525</TH>
<TH ALIGN=CENTER>88525</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>33.577%</TD>
   <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>33.577%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 16]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 18]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH>
<TH ALIGN=RIGHT>7,793</TH>
<TH ALIGN=RIGHT>7,793</TH>
   <TD ALIGN=RIGHT>2,519,724,550</TD><TD ALIGN=RIGHT>2,359,530,453</TD>
   <TD ALIGN=RIGHT>2,519,724,550</TD><TD ALIGN=RIGHT>2,359,530,453</TD>
Line 177: Line 200:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 17]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 19]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH>
<TH ALIGN=RIGHT>14,205</TH>
<TH ALIGN=RIGHT>14,205</TH>
   <TD ALIGN=RIGHT>2,914,958,544</TD><TD ALIGN=RIGHT>2,752,505,800</TD>
   <TD ALIGN=RIGHT>2,914,958,544</TD><TD ALIGN=RIGHT>2,752,505,800</TD>
Line 186: Line 209:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 18]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 20]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH>
<TH ALIGN=RIGHT>185,042</TH>
  <TD ALIGN=RIGHT>2,902,270,736</TD><TD ALIGN=RIGHT>1,852,394,361</TD>
  <TD ALIGN=RIGHT>1,049,876,375</TD><TD ALIGN=RIGHT>%&nbsp;37.31</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Mouse lemur]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>140884</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>26.636%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/67945 21]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH>
<TH ALIGN=RIGHT>2,685</TH>
  <TD ALIGN=RIGHT>2,608,572,064</TD><TD ALIGN=RIGHT>2,477,131,095</TD>
  <TD ALIGN=RIGHT>131,440,969</TD><TD ALIGN=RIGHT>%&nbsp;46.69</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Squirrel monkey]</TD><TH ALIGN=CENTER>80X</TH>
<TH ALIGN=CENTER>18744880</TH>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>32.339%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 22]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH>
<TH ALIGN=RIGHT>34</TH>
<TH ALIGN=RIGHT>34</TH>
   <TD ALIGN=RIGHT>2,484,532,062</TD><TD ALIGN=RIGHT>2,428,790,173</TD>
   <TD ALIGN=RIGHT>2,484,532,062</TD><TD ALIGN=RIGHT>2,428,790,173</TD>
Line 192: Line 233:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Horse]</TD><TH ALIGN=CENTER>6.8X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Horse]</TD><TH ALIGN=CENTER>6.8X</TH>
<TH ALIGN=CENTER>91571448</TH>
<TH ALIGN=CENTER>91571448</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>34.415%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 19]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 23]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH>
<TH ALIGN=RIGHT>3,144</TH>
  <TD ALIGN=RIGHT>2,723,219,641</TD><TD ALIGN=RIGHT>2,663,369,733</TD>
  <TD ALIGN=RIGHT>59,849,908</TD><TD ALIGN=RIGHT>%&nbsp;27.53</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Guinea pig]</TD><TH ALIGN=CENTER>6.76X</TH>
<TH ALIGN=CENTER>27942054</TH>
  <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>1000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 20]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH>
<TH ALIGN=RIGHT>298,413</TH>
<TH ALIGN=RIGHT>298,413</TH>
   <TD ALIGN=RIGHT>2,962,253,608</TD><TD ALIGN=RIGHT>1,922,910,435</TD>
   <TD ALIGN=RIGHT>2,962,253,608</TD><TD ALIGN=RIGHT>1,922,910,435</TD>
Line 210: Line 242:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRR01 Alpaca]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRR01 Alpaca]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>230521</TH>
<TH ALIGN=CENTER>230521</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>22.636%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/bottlenosedDolphin/Turtru1.0/ 21]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/20365 24]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH>
<TH ALIGN=RIGHT>116,467</TH>
<TH ALIGN=RIGHT>240,901</TH>
   <TD ALIGN=RIGHT>2,519,048,486</TD><TD ALIGN=RIGHT>2,298,444,090</TD>
   <TD ALIGN=RIGHT>2,551,996,573</TD><TD ALIGN=RIGHT>2,332,402,443</TD>
   <TD ALIGN=RIGHT>220,604,396</TD><TD ALIGN=RIGHT>%&nbsp;43.86</TD>
   <TD ALIGN=RIGHT>219,594,130</TD><TD ALIGN=RIGHT>%&nbsp;43.56</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN00 Dolphin]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Dolphin]</TD><TH ALIGN=CENTER>3.5X</TH>
<TH ALIGN=CENTER>166056</TH>
<TH ALIGN=CENTER>116261</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>30.267%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 22]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/13421 25]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH>
<TH ALIGN=RIGHT>150,851</TH>
<TH ALIGN=RIGHT>4,583</TH>
   <TD ALIGN=RIGHT>3,660,774,957</TD><TD ALIGN=RIGHT>2,137,225,476</TD>
   <TD ALIGN=RIGHT>2,808,525,991</TD><TD ALIGN=RIGHT>2,518,987,191</TD>
   <TD ALIGN=RIGHT>1,523,549,481</TD><TD ALIGN=RIGHT>%&nbsp;20.43</TD>
   <TD ALIGN=RIGHT>289,538,800</TD><TD ALIGN=RIGHT>%&nbsp;44.30</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tree shrew]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Pig]</TD><TH ALIGN=CENTER>24X</TH>
<TH ALIGN=CENTER>127888</TH>
<TH ALIGN=CENTER>148491826</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.685%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/84 23]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr2 susScr2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/82 26]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH>
<TH ALIGN=RIGHT>20</TH>
<TH ALIGN=RIGHT>11,692</TH>
   <TD ALIGN=RIGHT>2,262,501,571</TD><TD ALIGN=RIGHT>2,231,298,548</TD>
   <TD ALIGN=RIGHT>2,981,119,579</TD><TD ALIGN=RIGHT>2,804,673,174</TD>
   <TD ALIGN=RIGHT>31,203,023</TD><TD ALIGN=RIGHT>%&nbsp;42.41</TD>
   <TD ALIGN=RIGHT>176,446,405</TD><TD ALIGN=RIGHT>%&nbsp;49.56</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK00 Pig]</TD><TH ALIGN=CENTER>24X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Cow]</TD><TH ALIGN=CENTER>7.1X</TH>
<TH ALIGN=CENTER>134541103</TH>
<TH ALIGN=CENTER>85119472</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>26.255%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 24]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/83 27]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH>
<TH ALIGN=RIGHT>3,242</TH>
<TH ALIGN=RIGHT>1,218</TH>
  <TD ALIGN=RIGHT>2,737,490,501</TD><TD ALIGN=RIGHT>2,604,023,284</TD>
   <TD ALIGN=RIGHT>2,860,512,983</TD><TD ALIGN=RIGHT>1,201,271,277</TD>
  <TD ALIGN=RIGHT>133,467,217</TD><TD ALIGN=RIGHT>%&nbsp;43.74</TD>
   <TD ALIGN=RIGHT>1,659,241,706</TD><TD ALIGN=RIGHT>%&nbsp;20.52</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Rabbit]</TD><TH ALIGN=CENTER>6.51X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Sheep]</TD><TH ALIGN=CENTER>3X</TH>
<TH ALIGN=CENTER>111795807</TH>
<TH ALIGN=CENTER>100831284</TH>
  <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>15.341%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 25]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 28]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH>
<TH ALIGN=RIGHT>481,259</TH>
   <TD ALIGN=RIGHT>2,458,927,620</TD><TD ALIGN=RIGHT>2,060,419,685</TD>
   <TD ALIGN=RIGHT>398,507,935</TD><TD ALIGN=RIGHT>%&nbsp;35.67</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Sloth]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>9667</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>1000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 26]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH>
<TH ALIGN=RIGHT>96,944</TH>
<TH ALIGN=RIGHT>96,944</TH>
   <TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD>
   <TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD>
Line 264: Line 287:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Megabat]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Megabat]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>124060</TH>
<TH ALIGN=CENTER>124060</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>27.345%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 27]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/614 29]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH>
<TH ALIGN=RIGHT>2,353</TH>
<TH ALIGN=RIGHT>11,654</TH>
   <TD ALIGN=RIGHT>3,196,760,833</TD><TD ALIGN=RIGHT>3,118,565,340</TD>
  <TD ALIGN=RIGHT>2,034,575,300</TD><TD ALIGN=RIGHT>1,966,419,868</TD>
   <TD ALIGN=RIGHT>78,195,493</TD><TD ALIGN=RIGHT>%&nbsp;47.63</TD>
  <TD ALIGN=RIGHT>68,155,432</TD><TD ALIGN=RIGHT>%&nbsp;33.71</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Elephant]</TD><TH ALIGN=CENTER>7X</TH>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Microbat]</TD><TH ALIGN=CENTER>2.18X</TH>
<TH ALIGN=CENTER>46401353</TH>
<TH ALIGN=CENTER>4293315</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>24.363%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Felis_catus/catChr4/ 28]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/16726 30]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]</TH>
<TH ALIGN=RIGHT>104,054</TH>
<TH ALIGN=RIGHT>5,500</TH>
   <TD ALIGN=RIGHT>3,160,303,948</TD><TD ALIGN=RIGHT>1,990,635,005</TD>
   <TD ALIGN=RIGHT>2,455,541,136</TD><TD ALIGN=RIGHT>2,364,296,207</TD>
   <TD ALIGN=RIGHT>1,169,668,943</TD><TD ALIGN=RIGHT>%&nbsp;40.58</TD>
   <TD ALIGN=RIGHT>91,244,929</TD><TD ALIGN=RIGHT>%&nbsp;43.24</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACBE00 Cat]</TD><TH ALIGN=CENTER>2.8X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANG02 Cat]</TD><TH ALIGN=CENTER>12X</TH>
<TH ALIGN=CENTER>164876586</TH>
<TH ALIGN=CENTER>148491654</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>29.725%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 29]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/85 31]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH>
<TH ALIGN=RIGHT>3,268</TH>
   <TD ALIGN=RIGHT>2,410,976,875</TD><TD ALIGN=RIGHT>2,392,715,236</TD>
   <TD ALIGN=RIGHT>18,261,639</TD><TD ALIGN=RIGHT>%&nbsp;43.01</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Dog]</TD><TH ALIGN=CENTER>7.6X</TH>
<TH ALIGN=CENTER>63241923</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>29.144%</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 32]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH>
<TH ALIGN=RIGHT>81,467</TH>
<TH ALIGN=RIGHT>81,467</TH>
   <TD ALIGN=RIGHT>2,299,509,015</TD><TD ALIGN=RIGHT>2,245,312,831</TD>
   <TD ALIGN=RIGHT>2,299,509,015</TD><TD ALIGN=RIGHT>2,245,312,831</TD>
Line 291: Line 323:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Panda]</TD><TH ALIGN=CENTER>73X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Panda]</TD><TH ALIGN=CENTER>73X</TH>
<TH ALIGN=CENTER>1281781</TH>
<TH ALIGN=CENTER>1281781</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>30.979%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/85 30]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 33]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH>
<TH ALIGN=RIGHT>3,268</TH>
<TH ALIGN=RIGHT>379,802</TH>
   <TD ALIGN=RIGHT>2,410,976,875</TD><TD ALIGN=RIGHT>2,392,715,236</TD>
   <TD ALIGN=RIGHT>3,367,787,358</TD><TD ALIGN=RIGHT>2,133,134,836</TD>
   <TD ALIGN=RIGHT>18,261,639</TD><TD ALIGN=RIGHT>%&nbsp;43.01</TD>
   <TD ALIGN=RIGHT>1,234,652,522</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Dog]</TD><TH ALIGN=CENTER>7.6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/227 Hedgehog]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>63241923</TH>
<TH ALIGN=CENTER>33565</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>9.856%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/ 31]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 34]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH>
<TH ALIGN=RIGHT>292,141</TH>
<TH ALIGN=RIGHT>262,057</TH>
   <TD ALIGN=RIGHT>4,813,823,562</TD><TD ALIGN=RIGHT>2,371,493,872</TD>
   <TD ALIGN=RIGHT>2,936,119,008</TD><TD ALIGN=RIGHT>1,832,864,697</TD>
   <TD ALIGN=RIGHT>2,442,329,690</TD><TD ALIGN=RIGHT>%&nbsp;37.23</TD>
   <TD ALIGN=RIGHT>1,103,254,311</TD><TD ALIGN=RIGHT>%&nbsp;39.07</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV00 Armadillo]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/91 Shrew]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>55360</TH>
<TH ALIGN=CENTER>47941</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>9.382%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/614 32]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 35]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH>
<TH ALIGN=RIGHT>11,654</TH>
<TH ALIGN=RIGHT>481,259</TH>
   <TD ALIGN=RIGHT>2,034,575,300</TD><TD ALIGN=RIGHT>1,966,419,868</TD>
   <TD ALIGN=RIGHT>2,458,927,620</TD><TD ALIGN=RIGHT>2,060,419,685</TD>
   <TD ALIGN=RIGHT>68,155,432</TD><TD ALIGN=RIGHT>%&nbsp;33.71</TD>
   <TD ALIGN=RIGHT>398,507,935</TD><TD ALIGN=RIGHT>%&nbsp;35.67</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Microbat]</TD><TH ALIGN=CENTER>2.18X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Sloth]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>4293315</TH>
<TH ALIGN=CENTER>9667</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>18.019%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/82 33]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/12594 36]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH>
<TH ALIGN=RIGHT>11,692</TH>
<TH ALIGN=RIGHT>46,559</TH>
   <TD ALIGN=RIGHT>2,981,119,579</TD><TD ALIGN=RIGHT>2,804,673,174</TD>
   <TD ALIGN=RIGHT>3,631,522,711</TD><TD ALIGN=RIGHT>3,299,882,028</TD>
   <TD ALIGN=RIGHT>176,446,405</TD><TD ALIGN=RIGHT>%&nbsp;49.56</TD>
   <TD ALIGN=RIGHT>331,640,683</TD><TD ALIGN=RIGHT>%&nbsp;49.28</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Cow]</TD><TH ALIGN=CENTER>7.1X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Armadillo]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>85119472</TH>
<TH ALIGN=CENTER>1687935</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>25.201%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/83 34]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH>
<TH ALIGN=RIGHT>1,218</TH>
  <TD ALIGN=RIGHT>2,860,512,983</TD><TD ALIGN=RIGHT>1,201,271,277</TD>
  <TD ALIGN=RIGHT>1,659,241,706</TD><TD ALIGN=RIGHT>%&nbsp;0.00</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Sheep]</TD><TH ALIGN=CENTER>3X</TH>
<TH ALIGN=CENTER>100831284</TH>
  <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>1000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2488 35]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH>
<TH ALIGN=RIGHT>295,006</TH>
<TH ALIGN=RIGHT>295,006</TH>
   <TD ALIGN=RIGHT>2,985,258,999</TD><TD ALIGN=RIGHT>2,407,847,681</TD>
   <TD ALIGN=RIGHT>2,985,258,999</TD><TD ALIGN=RIGHT>2,407,847,681</TD>
Line 345: Line 368:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Rock hyrax]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Rock hyrax]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>24297</TH>
<TH ALIGN=CENTER>24297</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>15.147%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/771 36]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH>
<TH ALIGN=RIGHT>187,558</TH>
  <TD ALIGN=RIGHT>3,445,784,354</TD><TD ALIGN=RIGHT>1,923,624,051</TD>
  <TD ALIGN=RIGHT>1,522,160,303</TD><TD ALIGN=RIGHT>%&nbsp;11.44</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Pika]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>88760</TH>
  <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>1000</TD>
  <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 37]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH>
<TH ALIGN=RIGHT>379,802</TH>
  <TD ALIGN=RIGHT>3,367,787,358</TD><TD ALIGN=RIGHT>2,133,134,836</TD>
  <TD ALIGN=RIGHT>1,234,652,522</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/227 Hedgehog]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>33565</TH>
  <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>1000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 38]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 38]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH>
<TH ALIGN=RIGHT>325,491</TH>
<TH ALIGN=RIGHT>325,491</TH>
Line 372: Line 377:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAIY00 Tenrec]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAIY00 Tenrec]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>48377</TH>
<TH ALIGN=CENTER>48377</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>10.947%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 39]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10467 39]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH>
<TH ALIGN=RIGHT>262,057</TH>
<TH ALIGN=RIGHT>6,323</TH>
   <TD ALIGN=RIGHT>2,936,119,008</TD><TD ALIGN=RIGHT>1,832,864,697</TD>
  <TD ALIGN=RIGHT>3,103,808,406</TD><TD ALIGN=RIGHT>2,769,099,677</TD>
   <TD ALIGN=RIGHT>1,103,254,311</TD><TD ALIGN=RIGHT>%&nbsp;39.07</TD>
  <TD ALIGN=RIGHT>334,708,729</TD><TD ALIGN=RIGHT>%&nbsp;36.24</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/91 Shrew]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Manatee]</TD><TH ALIGN=CENTER>150X</TH>
<TH ALIGN=CENTER>47941</TH>
<TH ALIGN=CENTER>14442683</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>26.546%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/233 40]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 40]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH>
<TH ALIGN=RIGHT>2,353</TH>
   <TD ALIGN=RIGHT>3,196,760,833</TD><TD ALIGN=RIGHT>3,118,565,340</TD>
   <TD ALIGN=RIGHT>78,195,493</TD><TD ALIGN=RIGHT>%&nbsp;47.63</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Elephant]</TD><TH ALIGN=CENTER>7X</TH>
<TH ALIGN=CENTER>46401353</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.823%</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/233 41]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH>
<TH ALIGN=RIGHT>277,711</TH>
<TH ALIGN=RIGHT>277,711</TH>
   <TD ALIGN=RIGHT>3,075,184,024</TD><TD ALIGN=RIGHT>2,536,076,954</TD>
   <TD ALIGN=RIGHT>3,075,184,024</TD><TD ALIGN=RIGHT>2,536,076,954</TD>
Line 390: Line 404:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Wallaby]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Wallaby]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>36602</TH>
<TH ALIGN=CENTER>36602</TH>
   <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>4.353%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/mammals/opossum 41]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH>
<TH ALIGN=RIGHT>11</TH>
  <TD ALIGN=RIGHT>3,605,631,728</TD><TD ALIGN=RIGHT>3,501,660,299</TD>
  <TD ALIGN=RIGHT>103,971,429</TD><TD ALIGN=RIGHT>%&nbsp;55.95</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Opossum]</TD><TH ALIGN=CENTER>6.8X</TH>
<TH ALIGN=CENTER>527952102</TH>
  <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>1000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/3066 42]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/3066 42]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH>
<TH ALIGN=RIGHT>35,974</TH>
<TH ALIGN=RIGHT>35,974</TH>
Line 408: Line 413:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Tasmanian devil]</TD><TH ALIGN=CENTER>85X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Tasmanian devil]</TD><TH ALIGN=CENTER>85X</TH>
<TH ALIGN=CENTER>1847106</TH>
<TH ALIGN=CENTER>1847106</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>8.479%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/mammals/opossum 43]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH>
  <TH ALIGN=RIGHT>43</TH>
<TH ALIGN=RIGHT>11</TH>
  <TH ALIGN=RIGHT>ailMis1</TH><TD ALIGN=CENTER COLSPAN=11>to be done</TD>
  <TD ALIGN=RIGHT>3,605,631,728</TD><TD ALIGN=RIGHT>3,501,660,299</TD>
</TR>
  <TD ALIGN=RIGHT>103,971,429</TD><TD ALIGN=RIGHT>%&nbsp;55.95</TD>
<TR>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Opossum]</TD><TH ALIGN=CENTER>6.8X</TH>
  <TH ALIGN=RIGHT>44</TH>
<TH ALIGN=CENTER>527952102</TH>
   <TH ALIGN=RIGHT>croPor1</TH><TD ALIGN=CENTER COLSPAN=11>to be done</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>9.584%</TD>
</TR>
<TD ALIGN=RIGHT>5000</TD>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/110 45]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/110 44]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH>
<TH ALIGN=RIGHT>201,523</TH>
<TH ALIGN=RIGHT>201,523</TH>
   <TD ALIGN=RIGHT>1,996,811,212</TD><TD ALIGN=RIGHT>1,842,235,522</TD>
   <TD ALIGN=RIGHT>1,996,811,212</TD><TD ALIGN=RIGHT>1,842,235,522</TD>
Line 425: Line 431:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Platypus]</TD><TH ALIGN=CENTER>6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Platypus]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>991605</TH>
<TH ALIGN=CENTER>991605</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>5.348%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/111 46]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/111 45]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH>
<TH ALIGN=RIGHT>15,932</TH>
<TH ALIGN=RIGHT>15,932</TH>
   <TD ALIGN=RIGHT>1,046,932,099</TD><TD ALIGN=RIGHT>1,032,854,810</TD>
   <TD ALIGN=RIGHT>1,046,932,099</TD><TD ALIGN=RIGHT>1,032,854,810</TD>
Line 434: Line 440:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Chicken]</TD><TH ALIGN=CENTER>12X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Chicken]</TD><TH ALIGN=CENTER>12X</TH>
<TH ALIGN=CENTER>90216835</TH>
<TH ALIGN=CENTER>90216835</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.676%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/367 47]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/367 46]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH>
<TH ALIGN=RIGHT>70</TH>
<TH ALIGN=RIGHT>70</TH>
   <TD ALIGN=RIGHT>1,233,186,341</TD><TD ALIGN=RIGHT>1,222,864,691</TD>
   <TD ALIGN=RIGHT>1,233,186,341</TD><TD ALIGN=RIGHT>1,222,864,691</TD>
Line 443: Line 449:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Zebra finch]</TD><TH ALIGN=CENTER>6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Zebra finch]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>73657157</TH>
<TH ALIGN=CENTER>73657157</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.599%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 48]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 47]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH>
<TH ALIGN=RIGHT>5,891</TH>
<TH ALIGN=RIGHT>5,891</TH>
   <TD ALIGN=RIGHT>1,061,817,101</TD><TD ALIGN=RIGHT>935,922,386</TD>
   <TD ALIGN=RIGHT>1,061,817,101</TD><TD ALIGN=RIGHT>935,922,386</TD>
Line 452: Line 458:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH>
<TH ALIGN=CENTER>74864452</TH>
<TH ALIGN=CENTER>74864452</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.511%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10765 48]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH>
   <TH ALIGN=RIGHT>49</TH>
<TH ALIGN=RIGHT>25,212</TH>
   <TH ALIGN=RIGHT>chrPic1</TH><TD ALIGN=CENTER COLSPAN=11>to be done</TD>
   <TD ALIGN=RIGHT>1,117,373,619</TD><TD ALIGN=RIGHT>1,086,614,815</TD>
</TR>
  <TD ALIGN=RIGHT>30,758,804</TD><TD ALIGN=RIGHT>%&nbsp;19.62</TD>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 50]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Budgerigar]</TD><TH ALIGN=CENTER>7X</TH>
<TH ALIGN=CENTER>10614383</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.589%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH>
<TH ALIGN=RIGHT>6,457</TH>
<TH ALIGN=RIGHT>6,457</TH>
   <TD ALIGN=RIGHT>1,799,143,587</TD><TD ALIGN=RIGHT>1,701,353,767</TD>
   <TD ALIGN=RIGHT>1,799,143,587</TD><TD ALIGN=RIGHT>1,701,353,767</TD>
Line 465: Line 476:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Lizard]</TD><TH ALIGN=CENTER>7.1X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Lizard]</TD><TH ALIGN=CENTER>7.1X</TH>
<TH ALIGN=CENTER>150641573</TH>
<TH ALIGN=CENTER>150641573</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.331%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/12107 50]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH>
<TH ALIGN=RIGHT>80,984</TH>
  <TD ALIGN=RIGHT>2,589,745,704</TD><TD ALIGN=RIGHT>2,158,289,746</TD>
  <TD ALIGN=RIGHT>431,455,958</TD><TD ALIGN=RIGHT>%&nbsp;31.20</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Painted turtle]</TD><TH ALIGN=CENTER>15X</TH>
<TH ALIGN=CENTER>5212367</TH>
  <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.731%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH>
<TH ALIGN=RIGHT>19,550</TH>
<TH ALIGN=RIGHT>19,550</TH>
Line 474: Line 494:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 X. tropicalis]</TD><TH ALIGN=CENTER>7.65X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 X. tropicalis]</TD><TH ALIGN=CENTER>7.65X</TH>
<TH ALIGN=CENTER>1567461</TH>
<TH ALIGN=CENTER>1567461</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.125%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/56111 52]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/56111 52]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH>
<TH ALIGN=RIGHT>22,819</TH>
<TH ALIGN=RIGHT>22,819</TH>
Line 483: Line 503:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Coelacanth]</TD><TH ALIGN=CENTER>77.5X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Coelacanth]</TD><TH ALIGN=CENTER>77.5X</TH>
<TH ALIGN=CENTER>924513</TH>
<TH ALIGN=CENTER>924513</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.715%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2661 53]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2661 53]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH>
<TH ALIGN=RIGHT>427,428</TH>
<TH ALIGN=RIGHT>427,428</TH>
Line 492: Line 512:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Atlantic cod]</TD><TH ALIGN=CENTER>40X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Atlantic cod]</TD><TH ALIGN=CENTER>40X</TH>
<TH ALIGN=CENTER>393166</TH>
<TH ALIGN=CENTER>393166</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.726%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 54]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 54]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH>
<TH ALIGN=RIGHT>5,901</TH>
  <TD ALIGN=RIGHT>927,742,539</TD><TD ALIGN=RIGHT>816,084,674</TD>
  <TD ALIGN=RIGHT>111,657,865</TD><TD ALIGN=RIGHT>%&nbsp;25.51</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Nile tilapia]</TD><TH ALIGN=CENTER>269X</TH>
<TH ALIGN=CENTER>2802423</TH>
  <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>1000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 55]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH>
<TH ALIGN=RIGHT>23</TH>
<TH ALIGN=RIGHT>23</TH>
   <TD ALIGN=RIGHT>463,354,448</TD><TD ALIGN=RIGHT>446,627,861</TD>
   <TD ALIGN=RIGHT>463,354,448</TD><TD ALIGN=RIGHT>446,627,861</TD>
Line 510: Line 521:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Stickleback]</TD><TH ALIGN=CENTER>6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Stickleback]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>20083130</TH>
<TH ALIGN=CENTER>20083130</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.016%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.fugu-sg.org/ 56]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.fugu-sg.org/ 55]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH>
<TH ALIGN=RIGHT>6,835</TH>
<TH ALIGN=RIGHT>6,835</TH>
   <TD ALIGN=RIGHT>391,484,715</TD><TD ALIGN=RIGHT>350,961,831</TD>
   <TD ALIGN=RIGHT>391,484,715</TD><TD ALIGN=RIGHT>350,961,831</TD>
Line 519: Line 530:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Fugu]</TD><TH ALIGN=CENTER>8.5X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Fugu]</TD><TH ALIGN=CENTER>8.5X</TH>
<TH ALIGN=CENTER>11516971</TH>
<TH ALIGN=CENTER>11516971</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.789%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/59571 56]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH>
<TH ALIGN=RIGHT>5,678</TH>
  <TD ALIGN=RIGHT>927,696,114</TD><TD ALIGN=RIGHT>816,084,674</TD>
  <TD ALIGN=RIGHT>111,611,440</TD><TD ALIGN=RIGHT>%&nbsp;25.51</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Nile tilapia]</TD><TH ALIGN=CENTER>269X</TH>
<TH ALIGN=CENTER>27159252</TH>
  <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.957%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH>
<TH ALIGN=RIGHT>27</TH>
<TH ALIGN=RIGHT>27</TH>
Line 528: Line 548:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon]</TD><TH ALIGN=CENTER>7.9X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon]</TD><TH ALIGN=CENTER>7.9X</TH>
<TH ALIGN=CENTER>13390619</TH>
<TH ALIGN=CENTER>13390619</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.735%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 58]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 58]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH>
<TH ALIGN=RIGHT>1,133</TH>
<TH ALIGN=RIGHT>1,133</TH>
Line 537: Line 557:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Zebrafish]</TD><TH ALIGN=CENTER>30X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Zebrafish]</TD><TH ALIGN=CENTER>30X</TH>
<TH ALIGN=CENTER>54093808</TH>
<TH ALIGN=CENTER>54093808</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.602%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://dolphin.lab.nig.ac.jp/medaka/index.php 59]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH>
<TR><TH ALIGN=RIGHT>[http://dolphin.lab.nig.ac.jp/medaka/index.php 59]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH>
<TH ALIGN=RIGHT>7,189</TH>
<TH ALIGN=RIGHT>7,189</TH>
Line 546: Line 566:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Medaka]</TD><TH ALIGN=CENTER>10.6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Medaka]</TD><TH ALIGN=CENTER>10.6X</TH>
<TH ALIGN=CENTER>29908082</TH>
<TH ALIGN=CENTER>29908082</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.936%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/ 60]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/ 60]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]</TH>
<TH ALIGN=RIGHT>108,241</TH>
<TH ALIGN=RIGHT>108,241</TH>
Line 555: Line 575:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/287 Lamprey]</TD><TH ALIGN=CENTER>5.9X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/287 Lamprey]</TD><TH ALIGN=CENTER>5.9X</TH>
<TH ALIGN=CENTER>14239</TH>
<TH ALIGN=CENTER>14239</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.101%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
</TABLE>
</TABLE>

Latest revision as of 20:34, 16 April 2012

see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-test browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order
count/
ftp src		 ucsc
db name/
genome-test		 chrom
count		 total
size		 non-N
bases		 N base
count		 % masked common name/
src info		 coverage N50
chrom.sizes		 alignment type % of mm10
matched
(chainLink table)		 chain
minScore		 chain
linearGap
01mm10 66 2,730,871,7742,652,783,500 78,088,274% 45.18 Mouse20X 130694993 N/AN/A N/A N/A
02rn5 2,739 2,909,698,9382,572,853,723 336,845,215% 42.81 Rat6X 154597545 SyntenicNet67.353% 5000 medium
03speTri2 12,483 2,478,393,7702,311,060,300 167,333,470% 36.27 Squirrel495X 8192786 SyntenicNet34.217% 3000 medium
04dipOrd1 210,053 2,158,502,0981,844,961,421 313,540,677% 28.28 Kangaroo rat2X 36427 RecipBest19.460% 3000 medium
05hetGla2 4,229 2,618,204,6392,314,771,103 303,433,536% 32.31 Naked mole rat90X 20532749 SyntenicNet32.753% 3000 medium
06cavPor3 3,144 2,723,219,6412,663,369,733 59,849,908% 27.53 Guinea pig6.76X 27942054 SyntenicNet28.447% 3000 medium
07oryCun2 3,242 2,737,490,5012,604,023,284 133,467,217% 43.74 Rabbit6.51X 111795807 SyntenicNet25.248% 3000 medium
08ochPri2 187,558 3,445,784,3541,923,624,051 1,522,160,303% 11.44 Pika2X 88760 RecipBest14.542% 3000 medium
09tupBel1 150,851 3,660,774,9572,137,225,476 1,523,549,481% 20.43 Tree shrew2X 127888 RecipBest19.766% 3000 medium
10hg19 93 3,137,161,2642,897,310,462 239,850,802% 50.63 Human20X 146364022 SyntenicNet38.226% 3000 medium
11gorGor3 46,823 3,029,553,6462,822,760,080 206,793,566% 48.80 Gorilla2.1X 145327772 SyntenicNet33.987% 3000 medium
12panTro4 24,129 3,309,577,9222,902,338,967 407,238,955% 51.29 Chimp6X 143986469 SyntenicNet34.674% 3000 medium
13nomLeu2 17,976 2,936,052,6032,756,609,047 179,443,556% 51.44 Gibbon5.6X 22692035 SyntenicNet34.031% 3000 medium
14ponAbe2 55 3,446,771,3963,093,543,172 353,228,224% 50.89 Orangutan6X 135191526 SyntenicNet34.496% 3000 medium
15tarSyr1 656,709 3,179,905,1322,768,536,343 411,368,789% 41.75 Tarsier2X 12214 RecipBest24.560% 3000 medium
16rheMac3 34,103 2,969,988,1802,639,145,830 330,842,350% 48.54 Chinese rhesus50X 150158102 SyntenicNet33.931% 3000 medium
17papHam1 387,374 2,867,564,6542,741,849,051 125,715,603% 48.70 Baboon5.3X 88525 RecipBest33.577% 3000 medium
18otoGar3 7,793 2,519,724,5502,359,530,453 160,194,097% 39.51 Bushbaby137X 13852661 SyntenicNet29.795% 3000 medium
19calJac3 14,205 2,914,958,5442,752,505,800 162,452,744% 47.71 Marmoset6X 132174527 SyntenicNet32.450% 3000 medium
20micMur1 185,042 2,902,270,7361,852,394,361 1,049,876,375% 37.31 Mouse lemur2X 140884 RecipBest26.636% 3000 medium
21saiBol1 2,685 2,608,572,0642,477,131,095 131,440,969% 46.69 Squirrel monkey80X 18744880 SyntenicNet32.339% 3000 medium
22equCab2 34 2,484,532,0622,428,790,173 55,741,889% 40.97 Horse6.8X 91571448 SyntenicNet34.415% 3000 medium
23vicPac1 298,413 2,962,253,6081,922,910,435 1,039,343,173% 32.24 Alpaca2X 230521 RecipBest22.636% 3000 medium
24turTru2 240,901 2,551,996,5732,332,402,443 219,594,130% 43.56 Dolphin3.5X 116261 RecipBest30.267% 3000 medium
25susScr3 4,583 2,808,525,9912,518,987,191 289,538,800% 44.30 Pig24X 148491826 SyntenicNet25.685% 3000 medium
26bosTau7 11,692 2,981,119,5792,804,673,174 176,446,405% 49.56 Cow7.1X 85119472 SyntenicNet26.255% 3000 medium
27oviAri1 1,218 2,860,512,9831,201,271,277 1,659,241,706% 20.52 Sheep3X 100831284 RecipBest15.341% 3000 medium
28pteVam1 96,944 1,996,076,4101,839,436,660 156,639,750% 31.75 Megabat2X 124060 RecipBest27.345% 3000 medium
29myoLuc2 11,654 2,034,575,3001,966,419,868 68,155,432% 33.71 Microbat2.18X 4293315 SyntenicNet24.363% 3000 medium
30felCat5 5,500 2,455,541,1362,364,296,207 91,244,929% 43.24 Cat12X 148491654 RecipBest29.725% 3000 medium
31canFam3 3,268 2,410,976,8752,392,715,236 18,261,639% 43.01 Dog7.6X 63241923 SyntenicNet29.144% 3000 medium
32ailMel1 81,467 2,299,509,0152,245,312,831 54,196,184% 38.96 Panda73X 1281781 SyntenicNet30.979% 3000 medium
33eriEur1 379,802 3,367,787,3582,133,134,836 1,234,652,522% 50.89 Hedgehog2X 33565 RecipBest9.856% 3000 medium
34sorAra1 262,057 2,936,119,0081,832,864,697 1,103,254,311% 39.07 Shrew2X 47941 RecipBest9.382% 3000 medium
35choHof1 481,259 2,458,927,6202,060,419,685 398,507,935% 35.67 Sloth2X 9667 RecipBest18.019% 3000 medium
36dasNov3 46,559 3,631,522,7113,299,882,028 331,640,683% 49.28 Armadillo6X 1687935 RecipBest25.201% 3000 medium
37proCap1 295,006 2,985,258,9992,407,847,681 577,411,318% 28.11 Rock hyrax2X 24297 RecipBest15.147% 3000 medium
38echTel1 325,491 3,823,724,7282,111,581,369 1,712,143,359% 13.84 Tenrec2X 48377 RecipBest10.947% 3000 medium
39triMan1 6,323 3,103,808,4062,769,099,677 334,708,729% 36.24 Manatee150X 14442683 SyntenicNet26.546% 3000 medium
40loxAfr3 2,353 3,196,760,8333,118,565,340 78,195,493% 47.63 Elephant7X 46401353 SyntenicNet25.823% 3000 medium
41macEug2 277,711 3,075,184,0242,536,076,954 539,107,070% 47.39 Wallaby2X 36602 RecipBest4.353% 3000 medium
42sarHar1 35,974 3,174,693,0102,931,539,702 243,153,308% 39.66 Tasmanian devil85X 1847106 Net8.479% 5000 loose
43monDom5 11 3,605,631,7283,501,660,299 103,971,429% 55.95 Opossum6.8X 527952102 Net9.584% 5000 loose
44ornAna1 201,523 1,996,811,2121,842,235,522 154,575,690% 47.89 Platypus6X 991605 Net5.348% 5000 loose
45galGal4 15,932 1,046,932,0991,032,854,810 14,077,289% 20.41 Chicken12X 90216835 Net3.676% 5000 loose
46taeGut1 70 1,233,186,3411,222,864,691 10,321,650% 20.42 Zebra finch6X 73657157 Net3.599% 5000 loose
47melGal1 5,891 1,061,817,101935,922,386 125,894,715% 6.60 Turkey5X 74864452 Net3.511% 5000 loose
48melUnd1 25,212 1,117,373,6191,086,614,815 30,758,804% 19.62 Budgerigar7X 10614383 Net3.589% 5000 loose
49anoCar2 6,457 1,799,143,5871,701,353,767 97,789,820% 41.98 Lizard7.1X 150641573 Net3.331% 5000 loose
50chrPic1 80,984 2,589,745,7042,158,289,746 431,455,958% 31.20 Painted turtle15X 5212367 Net4.731% 5000 loose
51xenTro3 19,550 1,511,735,3261,358,334,882 153,400,444% 24.55 X. tropicalis7.65X 1567461 Net3.125% 5000 loose
52latCha1 22,819 2,860,591,9212,183,592,768 676,999,153% 45.68 Coelacanth77.5X 924513 Net2.715% 5000 loose
53gadMor1 427,428 824,327,835608,038,555 216,289,280% 31.25 Atlantic cod40X 393166 Net1.726% 5000 loose
54gasAcu1 23 463,354,448446,627,861 16,726,587% 2.58 Stickleback6X 20083130 Net2.016% 5000 loose
55fr3 6,835 391,484,715350,961,831 40,522,884% 19.01 Fugu8.5X 11516971 Net1.789% 5000 loose
56oreNil2 5,678 927,696,114816,084,674 111,611,440% 25.51 Nile tilapia269X 27159252 Net1.957% 5000 loose
57tetNig2 27 358,618,246302,314,788 56,303,458% 20.27 Tetraodon7.9X 13390619 Net1.735% 5000 loose
58danRer7 1,133 1,412,464,8431,409,770,109 2,694,734% 52.06 Zebrafish30X 54093808 Net2.602% 5000 loose
59oryLat2 7,189 869,000,216700,386,597 168,613,619% 33.09 Medaka10.6X 29908082 Net1.936% 5000 loose
60petMar1 108,241 1,027,258,967831,696,438 195,562,529% 40.67 Lamprey5.9X 14239 Net1.101% 5000 loose
Retrieved from "https://genomewiki.ucsc.edu/index.php?title=Mm10_Genome_size_statistics&oldid=19498"