Mm10 conservation alignment: Difference between revisions
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(fix assembly reference for mm10 to correct assembly) |
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<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD> | ||
<TD>Dec. 2011 (GRCm38/mm10)</TD> | <TD>Dec. 2011 (GRCm38/mm10)</TD> | ||
<TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD> | <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD> | ||
| Line 32: | Line 32: | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www. | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16219 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR06 Rattus<BR>norvegicus]</TD><TD>Rat</TD> | ||
<TD> | <TD>Mar. 2012 (RGSC 5.0/rn5)</TD> | ||
<TD> | <TD>RGSC Rnor_5.0 (GCA_000001895.3)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-03-21</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-03-21</TD> | ||
<TD>2012-03- | <TD>2012-03-26</TD><TD ALIGN=RIGHT>67.353%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD> | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD> | ||
| Line 46: | Line 46: | ||
<TD>2012-03-16</TD><TD ALIGN=RIGHT>34.217%</TD> | <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.217%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRO01 Dipodomys<BR>ordii]</TD><TD>Kangaroo rat</TD> | ||
<TD> | <TD>Jul. 2008 (Broad/dipOrd1)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000)</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD>2012-03- | <TD>2012-03-16</TD><TD ALIGN=RIGHT>19.460%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/72441 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Heterocephalus<BR>glaber]</TD><TD>Naked mole rat</TD> | |||
<TD>Jan. 2012 (Broad HetGla_female_1.0/hetGla2)</TD> | |||
<TD>Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)</TD> | |||
<TD ALIGN=RIGHT>2012-04-14</TD> | |||
<TD ALIGN=RIGHT>2012-04-14</TD> | |||
<TD>2012-04-14</TD><TD ALIGN=RIGHT>32.753%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea pig</TD> | |||
<TD>Feb. 2008 (Broad/cavPor3)</TD> | |||
<TD>Broad Institute cavPor3</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD>2012-03-17</TD><TD ALIGN=RIGHT>28.447%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD> | ||
<TD> | <TD>Apr. 2009 (Broad/oryCun2)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD>2012-03- | <TD>2012-03-17</TD><TD ALIGN=RIGHT>25.248%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/771 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Ochotona<BR>princeps]</TD><TD>Pika</TD> | ||
<TD> | <TD>Jul. 2008 (Broad/ochPri2)</TD> | ||
<TD>Broad | <TD>Broad Institute ochPri2</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD>2012-03- | <TD>2012-03-24</TD><TD ALIGN=RIGHT>14.542%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www. | <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tupaia<BR>belangeri]</TD><TD>Tree shrew</TD> | ||
<TD> | <TD>Dec. 2006 (Broad/tupBel1)</TD> | ||
<TD> | <TD>Broad Institute tupBel1 (NCBI project 13971, AAPY01000000)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD>2012-03- | <TD>2012-03-17</TD><TD ALIGN=RIGHT>19.766%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml | <TH>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD> | ||
<TD>Feb. 2009 (GRCh37/hg19)</TD> | <TD>Feb. 2009 (GRCh37/hg19)</TD> | ||
<TD>GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)</TD> | <TD>GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)</TD> | ||
| Line 81: | Line 95: | ||
<TD>2012-03-08</TD><TD ALIGN=RIGHT>38.226%</TD> | <TD>2012-03-08</TD><TD ALIGN=RIGHT>38.226%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla<BR>gorilla<BR>gorilla]</TD><TD>Gorilla</TD> | ||
<TD>May 2011 (gorGor3.1/gorGor3)</TD> | <TD>May 2011 (gorGor3.1/gorGor3)</TD> | ||
<TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD> | <TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD> | ||
| Line 88: | Line 102: | ||
<TD>2012-03-08</TD><TD ALIGN=RIGHT>33.987%</TD> | <TD>2012-03-08</TD><TD ALIGN=RIGHT>33.987%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD> | ||
<TD>Feb. 2011 (Pan_troglodytes-2.1.4/panTro4)</TD> | <TD>Feb. 2011 (Pan_troglodytes-2.1.4/panTro4)</TD> | ||
<TD>CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)</TD> | <TD>CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)</TD> | ||
| Line 95: | Line 109: | ||
<TD>2012-03-10</TD><TD ALIGN=RIGHT>34.674%</TD> | <TD>2012-03-10</TD><TD ALIGN=RIGHT>34.674%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13975 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV01 Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD> | ||
<TD> | <TD>Jun. 2011 (GGSC Nleu1.1/nomLeu2)</TD> | ||
<TD> | <TD>Gibbon Genome Sequencing Consortium Nleu1.1 (NCBI project 13975, GCA_000146795.2, WGS ADFV01)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-14</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-14</TD> | ||
<TD>2012- | <TD>2012-04-14</TD><TD ALIGN=RIGHT>34.031%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ | <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD> | ||
<TD>July 2007 (WUGSC 2.0.2/ponAbe2)</TD> | <TD>July 2007 (WUGSC 2.0.2/ponAbe2)</TD> | ||
<TD>WUSTL 3.0</TD> | <TD>WUSTL 3.0</TD> | ||
| Line 109: | Line 123: | ||
<TD>2012-03-09</TD><TD ALIGN=RIGHT>34.496%</TD> | <TD>2012-03-09</TD><TD ALIGN=RIGHT>34.496%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT00 Tarsius<BR>syrichta]</TD><TD>Tarsier</TD> | ||
<TD>Aug. 2008 (Broad/tarSyr1)</TD> | <TD>Aug. 2008 (Broad/tarSyr1)</TD> | ||
<TD>Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000)</TD> | <TD>Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000)</TD> | ||
| Line 116: | Line 130: | ||
<TD>2012-03-12</TD><TD ALIGN=RIGHT>24.560%</TD> | <TD>2012-03-12</TD><TD ALIGN=RIGHT>24.560%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Chinese rhesus</TD> | ||
<TD>Oct. 2010 (BGI CR_1.0/rheMac3)</TD> | <TD>Oct. 2010 (BGI CR_1.0/rheMac3)</TD> | ||
<TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD> | <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD> | ||
| Line 123: | Line 137: | ||
<TD>2012-03-09</TD><TD ALIGN=RIGHT>33.931%</TD> | <TD>2012-03-09</TD><TD ALIGN=RIGHT>33.931%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas | <TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Papio<BR>hamadryas]</TD><TD>Baboon</TD> | ||
<TD>Nov. 2008 (Baylor 1.0/papHam1)</TD> | <TD>Nov. 2008 (Baylor 1.0/papHam1)</TD> | ||
<TD>Baylor BCM HGSC Pham_1.0</TD> | <TD>Baylor BCM HGSC Pham_1.0</TD> | ||
| Line 130: | Line 144: | ||
<TD>2012-03-10</TD><TD ALIGN=RIGHT>33.577%</TD> | <TD>2012-03-10</TD><TD ALIGN=RIGHT>33.577%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD> | ||
<TD>Mar. 2011 (Broad OtoGar3/otoGar3)</TD> | <TD>Mar. 2011 (Broad OtoGar3/otoGar3)</TD> | ||
<TD>Broad Institute (GCA_000181295.3)</TD> | <TD>Broad Institute (GCA_000181295.3)</TD> | ||
| Line 137: | Line 151: | ||
<TD>2012-03-13</TD><TD ALIGN=RIGHT>29.795%</TD> | <TD>2012-03-13</TD><TD ALIGN=RIGHT>29.795%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ | <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD> | ||
<TD>March 2009 (WUGSC 3.2/calJac3)</TD> | <TD>March 2009 (WUGSC 3.2/calJac3)</TD> | ||
<TD>WUSTL 3.2 (GCA_000004665.1)</TD> | <TD>WUSTL 3.2 (GCA_000004665.1)</TD> | ||
| Line 144: | Line 158: | ||
<TD>2012-03-09</TD><TD ALIGN=RIGHT>32.450%</TD> | <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.450%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ | <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Microcebus<BR>murinus]</TD><TD>Mouse lemur</TD> | ||
<TD>Jun. 2003 (Broad/micMur1)</TD> | |||
<TD>Broad Institute micMur1 (NCBI project 19967, ABDC00000000)</TD> | |||
<TD ALIGN=RIGHT>2009-09-02</TD> | |||
<TD ALIGN=RIGHT>N/A</TD> | |||
<TD>2012-03-13</TD><TD ALIGN=RIGHT>26.636%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel monkey</TD> | |||
<TD>Oct. 2011 (SaiBol1.0/saiBol1)</TD> | |||
<TD>Broad SaiBol1.0 (GCA_000235385.1)</TD> | |||
<TD ALIGN=RIGHT>2012-01-07</TD> | |||
<TD ALIGN=RIGHT>2012-01-09</TD> | |||
<TD>2012-03-09</TD><TD ALIGN=RIGHT>32.339%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD> | |||
<TD>Sep. 2007 (Broad/equCab2)</TD> | <TD>Sep. 2007 (Broad/equCab2)</TD> | ||
<TD>Broad Institute EquCab2</TD> | <TD>Broad Institute EquCab2</TD> | ||
<TD ALIGN=RIGHT>2009-08-14</TD> | <TD ALIGN=RIGHT>2009-08-14</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.415%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRR01 Vicugna<BR>pacos]</TD><TD>Alpaca</TD> | ||
<TD>Jul. 2008 (Broad/vicPac1)</TD> | <TD>Jul. 2008 (Broad/vicPac1)</TD> | ||
<TD>Broad Institute vicPac1</TD> | <TD>Broad Institute vicPac1</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-17</TD><TD ALIGN=RIGHT>22.636%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD> | ||
<TD> | <TD>Oct. 2011 (Baylor Ttru_1.4/turTru2)</TD> | ||
<TD> | <TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-14</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-14</TD> | ||
<TD> | <TD>2012-04-14</TD><TD ALIGN=RIGHT>30.267%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www. | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13421 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Sus<BR>scrofa]</TD><TD>Pig</TD> | ||
<TD> | <TD>Aug. 2011 (SGSC Sscrofa10.2/susScr3)</TD> | ||
<TD> | <TD>SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-12</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-13</TD> | ||
<TD> | <TD>2012-04-14</TD><TD ALIGN=RIGHT>25.685%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/82 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD> | ||
<TD> | <TD>Oct. 2011 (Btau_4.6.1/bosTau7)</TD> | ||
<TD> | <TD>Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-04</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-06</TD> | ||
<TD> | <TD>2012-03-22</TD><TD ALIGN=RIGHT>26.255%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH | <TH>[http://www.ncbi.nlm.nih.gov/genome/83 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Ovis<BR>aries]</TD><TD>Sheep</TD> | ||
<TD>Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1)</TD> | |||
<TD>ISGC (NCBI project 10709, accession GCA_000005525.1)</TD> | |||
<TD ALIGN=RIGHT>2010-04-14</TD> | |||
<TD> | |||
<TD> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-22</TD><TD ALIGN=RIGHT>15.341%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD> | ||
<TD>Jul. 2008 (Broad/pteVam1)</TD> | <TD>Jul. 2008 (Broad/pteVam1)</TD> | ||
<TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD> | <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-20</TD><TD ALIGN=RIGHT>27.345%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www. | <TH>[http://www.ncbi.nlm.nih.gov/genome/614 29]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD> | ||
<TD>Jul. | <TD>Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2010-11-03</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-22</TD><TD ALIGN=RIGHT>24.363%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/16726 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANG02 Felis<BR>catus]</TD><TD>Cat</TD> | |||
<TD>Sep. 2011 (ICGSC Felis_catus 6.2/felCat5)</TD> | |||
<TD>International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2)</TD> | |||
<TD ALIGN=RIGHT>2012-04-12</TD> | |||
<TD ALIGN=RIGHT>2012-04-13</TD> | |||
<TD>2012-04-14</TD><TD ALIGN=RIGHT>29.725%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[http://www.ncbi.nlm.nih.gov/genome/85 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD> | ||
<TD> | <TD>Sep. 2011 (Broad CanFam3.1/canFam3)</TD> | ||
<TD> | <TD>Broad CanFam3.1 (GCA_000002285.2)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-05</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-06</TD> | ||
<TD> | <TD>2012-03-20</TD><TD ALIGN=RIGHT>29.144%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ | <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 32]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD> | ||
<TD>Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)</TD> | <TD>Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)</TD> | ||
<TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD> | <TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD> | ||
<TD ALIGN=RIGHT>2010-02-03</TD> | <TD ALIGN=RIGHT>2010-02-03</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-20</TD><TD ALIGN=RIGHT>30.979%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/227 Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD> | ||
<TD> | <TD>June 2006 (Broad/eriEur1)</TD> | ||
<TD>Broad | <TD>Broad Institute eriEur1 (Draft_v1, NCBI project 12575)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD> | <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.856%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/91 Sorex<BR>araneus]</TD><TD>Shrew</TD> | ||
<TD> | <TD>June 2006 (Broad/sorAra1)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute sorAra1 (Draft_v2)</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | |||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD | <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.382%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http:// | <TH>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 35]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Choloepus<BR>hoffmanni]</TD><TD>Sloth</TD> | ||
<TD>Jul. | <TD>Jul. 2008 (Broad/choHof1)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute choHof1</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD | <TD>2012-03-22</TD><TD ALIGN=RIGHT>18.019%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12594 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD> | ||
<TD> | <TD>Dec. 2011 (Armadillo/dasNov3)</TD> | ||
<TD> | <TD>Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-12</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-13</TD> | ||
<TD> | <TD>2012-04-14</TD><TD ALIGN=RIGHT>25.201%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/2488 | <TH>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Procavia<BR>capensis]</TD><TD>Rock hyrax</TD> | ||
<TD>Jul. 2008 (Broad/proCap1)</TD> | <TD>Jul. 2008 (Broad/proCap1)</TD> | ||
<TD>Broad Institute proCap1 (NCBI project 13972, ABRQ01000000)</TD> | <TD>Broad Institute proCap1 (NCBI project 13972, ABRQ01000000)</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-23</TD><TD ALIGN=RIGHT>15.147%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAIY00 Echinops<BR>telfairi]</TD><TD>Tenrec</TD> | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAIY00 Echinops<BR>telfairi]</TD><TD>Tenrec</TD> | ||
| Line 289: | Line 289: | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-24</TD><TD ALIGN=RIGHT>10.947%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/10467 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD> | |||
<TD>Oct. 2011 (BROAD v1.0/triMan1)</TD> | |||
<TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD> | |||
<TD ALIGN=RIGHT>2012-03-28</TD> | |||
<TD ALIGN=RIGHT>2012-03-29</TD> | |||
<TD>2012-03-30</TD><TD ALIGN=RIGHT>26.546%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD> | ||
<TD> | <TD>Jul. 2009 (Broad/loxAfr3)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-20</TD><TD ALIGN=RIGHT>25.823%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/233 | <TH>[http://www.ncbi.nlm.nih.gov/genome/233 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD> | ||
<TD>Sep. 2009 (TWGS Meug_1.1/macEug2)</TD> | <TD>Sep. 2009 (TWGS Meug_1.1/macEug2)</TD> | ||
<TD>TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1)</TD> | <TD>TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1)</TD> | ||
<TD ALIGN=RIGHT>2010-11-05</TD> | <TD ALIGN=RIGHT>2010-11-05</TD> | ||
<TD ALIGN=RIGHT>2011-12-02</TD> | <TD ALIGN=RIGHT>2011-12-02</TD> | ||
<TD> | <TD>2012-03-24</TD><TD ALIGN=RIGHT>4.353%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/3066 42]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian devil</TD> | <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 42]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian devil</TD> | ||
| Line 317: | Line 317: | ||
<TD ALIGN=RIGHT>2012-02-02</TD> | <TD ALIGN=RIGHT>2012-02-02</TD> | ||
<TD ALIGN=RIGHT>2012-02-08</TD> | <TD ALIGN=RIGHT>2012-02-08</TD> | ||
<TD> | <TD>2012-03-30</TD><TD ALIGN=RIGHT>8.479%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[http://www.broadinstitute.org/mammals/opossum 43]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD> | ||
<TD> | <TD>Oct. 2006 (Broad/monDom5)</TD> | ||
<TD> | <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-08-14</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-08-14</TD> | ||
<TD> | <TD>2012-03-30</TD><TD ALIGN=RIGHT>9.584%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/110 44]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/110 | |||
<TD>Mar. 2007 (WUGSC 5.0.1/ornAna1)</TD> | <TD>Mar. 2007 (WUGSC 5.0.1/ornAna1)</TD> | ||
<TD>WUSTL version 5.0.1</TD> | <TD>WUSTL version 5.0.1</TD> | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-03-30</TD><TD ALIGN=RIGHT>5.348%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/111 | <TH>[http://www.ncbi.nlm.nih.gov/genome/111 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD> | ||
<TD>Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4)</TD> | <TD>Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4)</TD> | ||
<TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD> | <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD> | ||
<TD ALIGN=RIGHT>2012-01-04</TD> | <TD ALIGN=RIGHT>2012-01-04</TD> | ||
<TD ALIGN=RIGHT>2012-01-04</TD> | <TD ALIGN=RIGHT>2012-01-04</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.676%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/367 | <TH>[http://www.ncbi.nlm.nih.gov/genome/367 46]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Taeniopygia<BR>guttata]</TD><TD>Zebra finch</TD> | ||
<TD>Jul. 2008 (WUGSC 3.2.4/taeGut1)</TD> | <TD>Jul. 2008 (WUGSC 3.2.4/taeGut1)</TD> | ||
<TD>Washington University taeGut1</TD> | <TD>Washington University taeGut1</TD> | ||
<TD ALIGN=RIGHT>2009-08-14</TD> | <TD ALIGN=RIGHT>2009-08-14</TD> | ||
<TD ALIGN=RIGHT>2009-08-14</TD> | <TD ALIGN=RIGHT>2009-08-14</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.599%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD> | ||
<TD>Dec. 2009 (TGC Turkey_2.01/melGal1)</TD> | <TD>Dec. 2009 (TGC Turkey_2.01/melGal1)</TD> | ||
<TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD> | <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD> | ||
<TD ALIGN=RIGHT>2010-11-04</TD> | <TD ALIGN=RIGHT>2010-11-04</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.511%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 48]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD> | ||
<TD> | <TD>Sep. 2011 (WUSTL v6.3/melUnd1)</TD> | ||
<TD> | <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-03-27</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-03-28</TD> | ||
<TD> | <TD>2012-03-30</TD><TD ALIGN=RIGHT>3.589%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD> | ||
<TD>May 2010 (Broad AnoCar2.0/anoCar2)</TD> | <TD>May 2010 (Broad AnoCar2.0/anoCar2)</TD> | ||
<TD>Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)</TD> | <TD>Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)</TD> | ||
<TD ALIGN=RIGHT>2011-04-12</TD> | <TD ALIGN=RIGHT>2011-04-12</TD> | ||
<TD ALIGN=RIGHT>2011-04-13</TD> | <TD ALIGN=RIGHT>2011-04-13</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.331%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/12107 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted turtle</TD> | |||
<TD>Dec. 2011 (v3.0.1/chrPic1)</TD> | |||
<TD>International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)</TD> | |||
<TD ALIGN=RIGHT>2012-03-27</TD> | |||
<TD ALIGN=RIGHT>2012-03-29</TD> | |||
<TD>2012-03-30</TD><TD ALIGN=RIGHT>4.731%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 Xenopus<BR>tropicalis]</TD><TD>X. tropicalis</TD> | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 Xenopus<BR>tropicalis]</TD><TD>X. tropicalis</TD> | ||
| Line 380: | Line 380: | ||
<TD ALIGN=RIGHT>2011-09-08</TD> | <TD ALIGN=RIGHT>2011-09-08</TD> | ||
<TD ALIGN=RIGHT>2011-09-08</TD> | <TD ALIGN=RIGHT>2011-09-08</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.125%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD> | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD> | ||
| Line 387: | Line 387: | ||
<TD ALIGN=RIGHT>2012-01-11</TD> | <TD ALIGN=RIGHT>2012-01-11</TD> | ||
<TD ALIGN=RIGHT>2012-01-12</TD> | <TD ALIGN=RIGHT>2012-01-12</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>2.715%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/2661 53]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic cod</TD> | <TH>[http://www.ncbi.nlm.nih.gov/genome/2661 53]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic cod</TD> | ||
| Line 394: | Line 394: | ||
<TD ALIGN=RIGHT>2011-12-29</TD> | <TD ALIGN=RIGHT>2011-12-29</TD> | ||
<TD ALIGN=RIGHT>2012-01-04</TD> | <TD ALIGN=RIGHT>2012-01-04</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.726%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ | <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 54]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD> | ||
<TD>Feb. 2006 (Broad/gasAcu1)</TD> | <TD>Feb. 2006 (Broad/gasAcu1)</TD> | ||
<TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD> | <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD> | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>2.016%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.fugu-sg.org/ | <TH>[http://www.fugu-sg.org/ 55]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD> | ||
<TD>Oct. 2011 (FUGU5/fr3)</TD> | <TD>Oct. 2011 (FUGU5/fr3)</TD> | ||
<TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD> | <TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD> | ||
<TD ALIGN=RIGHT>2011-11-16</TD> | <TD ALIGN=RIGHT>2011-11-16</TD> | ||
<TD ALIGN=RIGHT>2011-11-17</TD> | <TD ALIGN=RIGHT>2011-11-17</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.789%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/59571 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile tilapia</TD> | |||
<TD>Jan. 2011 (Nile tilapia/oreNil2)</TD> | |||
<TD>Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1)</TD> | |||
<TD ALIGN=RIGHT>2012-04-10</TD> | |||
<TD ALIGN=RIGHT>2012-04-11</TD> | |||
<TD>2012-04-11</TD><TD ALIGN=RIGHT>1.957%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD> | <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD> | ||
| Line 422: | Line 422: | ||
<TD ALIGN=RIGHT>2010-06-07</TD> | <TD ALIGN=RIGHT>2010-06-07</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD> | <TD>2012-04-02</TD><TD ALIGN=RIGHT>1.735%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Danio<BR>rerio]</TD><TD>Zebrafish</TD> | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Danio<BR>rerio]</TD><TD>Zebrafish</TD> | ||
| Line 429: | Line 429: | ||
<TD ALIGN=RIGHT>2010-12-03</TD> | <TD ALIGN=RIGHT>2010-12-03</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>2.602%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD> | <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD> | ||
| Line 436: | Line 436: | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD> | <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.936%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/ 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/287 Petromyzon<BR>marinus]</TD><TD>Lamprey</TD> | <TH>[ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/ 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/287 Petromyzon<BR>marinus]</TD><TD>Lamprey</TD> | ||
| Line 443: | Line 443: | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD ALIGN=RIGHT>2009-08-14</TD> | <TD ALIGN=RIGHT>2009-08-14</TD> | ||
<TD> | <TD>2012-04-04</TD><TD ALIGN=RIGHT>1.101%</TD> | ||
</TR> | </TR> | ||
</TABLE> | </TABLE> | ||
Latest revision as of 16:53, 8 August 2012
see also
- Mouse 60-way Mm10 Genome size statistics
- Mouse 60-way Mm10 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date | source version |
Repeat Masker |
Window Masker |
chain on mm10 |
% of mm10 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | N/A | N/A |
| 02 | rn5 | Rattus norvegicus | Rat | Mar. 2012 (RGSC 5.0/rn5) | RGSC Rnor_5.0 (GCA_000001895.3) | 2012-03-21 | 2012-03-21 | 2012-03-26 | 67.353% |
| 03 | speTri2 | Spermophilus tridecemlineatus | Squirrel | Nov. 2011 (Broad SpeTri2/speTri2) | Broad Institute (GCA_000236235.1) | 2012-03-14 | 2012-03-15 | 2012-03-16 | 34.217% |
| 04 | dipOrd1 | Dipodomys ordii | Kangaroo rat | Jul. 2008 (Broad/dipOrd1) | Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) | 2009-09-02 | N/A | 2012-03-16 | 19.460% |
| 05 | hetGla2 | Heterocephalus glaber | Naked mole rat | Jan. 2012 (Broad HetGla_female_1.0/hetGla2) | Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) | 2012-04-14 | 2012-04-14 | 2012-04-14 | 32.753% |
| 06 | cavPor3 | Cavia porcellus | Guinea pig | Feb. 2008 (Broad/cavPor3) | Broad Institute cavPor3 | 2009-08-15 | 2009-08-15 | 2012-03-17 | 28.447% |
| 07 | oryCun2 | Oryctolagus cuniculus | Rabbit | Apr. 2009 (Broad/oryCun2) | Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) | 2009-09-02 | N/A | 2012-03-17 | 25.248% |
| 08 | ochPri2 | Ochotona princeps | Pika | Jul. 2008 (Broad/ochPri2) | Broad Institute ochPri2 | 2009-09-02 | N/A | 2012-03-24 | 14.542% |
| 09 | tupBel1 | Tupaia belangeri | Tree shrew | Dec. 2006 (Broad/tupBel1) | Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) | 2009-09-02 | N/A | 2012-03-17 | 19.766% |
| 10 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | N/A | 2012-03-08 | 38.226% |
| 11 | gorGor3 | Gorilla gorilla gorilla | Gorilla | May 2011 (gorGor3.1/gorGor3) | Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) | 2011-11-16 | N/A | 2012-03-08 | 33.987% |
| 12 | panTro4 | Pan troglodytes | Chimp | Feb. 2011 (Pan_troglodytes-2.1.4/panTro4) | CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) | 2012-01-09 | 2012-01-09 | 2012-03-10 | 34.674% |
| 13 | nomLeu2 | Nomascus leucogenys | Gibbon | Jun. 2011 (GGSC Nleu1.1/nomLeu2) | Gibbon Genome Sequencing Consortium Nleu1.1 (NCBI project 13975, GCA_000146795.2, WGS ADFV01) | 2012-04-14 | 2012-04-14 | 2012-04-14 | 34.031% |
| 14 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | N/A | 2012-03-09 | 34.496% |
| 15 | tarSyr1 | Tarsius syrichta | Tarsier | Aug. 2008 (Broad/tarSyr1) | Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) | 2009-09-02 | N/A | 2012-03-12 | 24.560% |
| 16 | rheMac3 | Macaca mulatta | Chinese rhesus | Oct. 2010 (BGI CR_1.0/rheMac3) | Beijing Genomics Institute, Shenzhen (GCA_000230795.1) | 2011-12-30 | 2012-01-03 | 2012-03-09 | 33.931% |
| 17 | papHam1 | Papio hamadryas | Baboon | Nov. 2008 (Baylor 1.0/papHam1) | Baylor BCM HGSC Pham_1.0 | 2009-09-02 | N/A | 2012-03-10 | 33.577% |
| 18 | otoGar3 | Otolemur garnettii | Bushbaby | Mar. 2011 (Broad OtoGar3/otoGar3) | Broad Institute (GCA_000181295.3) | 2012-03-13 | 2012-03-14 | 2012-03-13 | 29.795% |
| 19 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | N/A | 2012-03-09 | 32.450% |
| 20 | micMur1 | Microcebus murinus | Mouse lemur | Jun. 2003 (Broad/micMur1) | Broad Institute micMur1 (NCBI project 19967, ABDC00000000) | 2009-09-02 | N/A | 2012-03-13 | 26.636% |
| 21 | saiBol1 | Saimiri boliviensis | Squirrel monkey | Oct. 2011 (SaiBol1.0/saiBol1) | Broad SaiBol1.0 (GCA_000235385.1) | 2012-01-07 | 2012-01-09 | 2012-03-09 | 32.339% |
| 22 | equCab2 | Equus caballus | Horse | Sep. 2007 (Broad/equCab2) | Broad Institute EquCab2 | 2009-08-14 | N/A | 2012-03-16 | 34.415% |
| 23 | vicPac1 | Vicugna pacos | Alpaca | Jul. 2008 (Broad/vicPac1) | Broad Institute vicPac1 | 2009-09-02 | N/A | 2012-03-17 | 22.636% |
| 24 | turTru2 | Tursiops truncatus | Dolphin | Oct. 2011 (Baylor Ttru_1.4/turTru2) | Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) | 2012-04-14 | 2012-04-14 | 2012-04-14 | 30.267% |
| 25 | susScr3 | Sus scrofa | Pig | Aug. 2011 (SGSC Sscrofa10.2/susScr3) | SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) | 2012-04-12 | 2012-04-13 | 2012-04-14 | 25.685% |
| 26 | bosTau7 | Bos taurus | Cow | Oct. 2011 (Btau_4.6.1/bosTau7) | Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) | 2012-01-04 | 2012-01-06 | 2012-03-22 | 26.255% |
| 27 | oviAri1 | Ovis aries | Sheep | Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) | ISGC (NCBI project 10709, accession GCA_000005525.1) | 2010-04-14 | N/A | 2012-03-22 | 15.341% |
| 28 | pteVam1 | Pteropus vampyrus | Megabat | Jul. 2008 (Broad/pteVam1) | Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) | 2009-09-02 | N/A | 2012-03-20 | 27.345% |
| 29 | myoLuc2 | Myotis lucifugus | Microbat | Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) | Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) | 2010-11-03 | N/A | 2012-03-22 | 24.363% |
| 30 | felCat5 | Felis catus | Cat | Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) | International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2) | 2012-04-12 | 2012-04-13 | 2012-04-14 | 29.725% |
| 31 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2012-03-20 | 29.144% |
| 32 | ailMel1 | Ailuropoda melanoleuca | Panda | Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) | BGI-Shenzhen AilMel 1.0 Dec. 2009 | 2010-02-03 | N/A | 2012-03-20 | 30.979% |
| 33 | eriEur1 | Erinaceus europaeus | Hedgehog | June 2006 (Broad/eriEur1) | Broad Institute eriEur1 (Draft_v1, NCBI project 12575) | 2009-09-02 | 2009-09-02 | 2012-03-24 | 9.856% |
| 34 | sorAra1 | Sorex araneus | Shrew | June 2006 (Broad/sorAra1) | Broad Institute sorAra1 (Draft_v2) | 2009-09-02 | 2009-09-02 | 2012-03-24 | 9.382% |
| 35 | choHof1 | Choloepus hoffmanni | Sloth | Jul. 2008 (Broad/choHof1) | Broad Institute choHof1 | 2009-09-02 | N/A | 2012-03-22 | 18.019% |
| 36 | dasNov3 | Dasypus novemcinctus | Armadillo | Dec. 2011 (Armadillo/dasNov3) | Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) | 2012-04-12 | 2012-04-13 | 2012-04-14 | 25.201% |
| 37 | proCap1 | Procavia capensis | Rock hyrax | Jul. 2008 (Broad/proCap1) | Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) | 2009-09-02 | N/A | 2012-03-23 | 15.147% |
| 38 | echTel1 | Echinops telfairi | Tenrec | July 2005 (Broad/echTel1) | Broad July 2005 | 2009-09-02 | N/A | 2012-03-24 | 10.947% |
| 39 | triMan1 | Trichechus manatus latirostris | Manatee | Oct. 2011 (BROAD v1.0/triMan1) | Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) | 2012-03-28 | 2012-03-29 | 2012-03-30 | 26.546% |
| 40 | loxAfr3 | Loxodonta africana | Elephant | Jul. 2009 (Broad/loxAfr3) | Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) | 2009-09-02 | N/A | 2012-03-20 | 25.823% |
| 41 | macEug2 | Macropus eugenii | Wallaby | Sep. 2009 (TWGS Meug_1.1/macEug2) | TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) | 2010-11-05 | 2011-12-02 | 2012-03-24 | 4.353% |
| 42 | sarHar1 | Sarcophilus harrisii | Tasmanian devil | Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) | Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) | 2012-02-02 | 2012-02-08 | 2012-03-30 | 8.479% |
| 43 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2012-03-30 | 9.584% |
| 44 | ornAna1 | Ornithorhynchus anatinus | Platypus | Mar. 2007 (WUGSC 5.0.1/ornAna1) | WUSTL version 5.0.1 | 2009-08-15 | N/A | 2012-03-30 | 5.348% |
| 45 | galGal4 | Gallus gallus | Chicken | Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) | ICGSC Gallus_gallus-4.0 (GCA_000002315.2) | 2012-01-04 | 2012-01-04 | 2012-04-03 | 3.676% |
| 46 | taeGut1 | Taeniopygia guttata | Zebra finch | Jul. 2008 (WUGSC 3.2.4/taeGut1) | Washington University taeGut1 | 2009-08-14 | 2009-08-14 | 2012-04-03 | 3.599% |
| 47 | melGal1 | Meleagris gallopavo | Turkey | Dec. 2009 (TGC Turkey_2.01/melGal1) | TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) | 2010-11-04 | N/A | 2012-04-03 | 3.511% |
| 48 | melUnd1 | Melopsittacus undulatus | Budgerigar | Sep. 2011 (WUSTL v6.3/melUnd1) | WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) | 2012-03-27 | 2012-03-28 | 2012-03-30 | 3.589% |
| 49 | anoCar2 | Anolis carolinensis | Lizard | May 2010 (Broad AnoCar2.0/anoCar2) | Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) | 2011-04-12 | 2011-04-13 | 2012-04-03 | 3.331% |
| 50 | chrPic1 | Chrysemys picta bellii | Painted turtle | Dec. 2011 (v3.0.1/chrPic1) | International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) | 2012-03-27 | 2012-03-29 | 2012-03-30 | 4.731% |
| 51 | xenTro3 | Xenopus tropicalis | X. tropicalis | Nov. 2009 (JGI 4.2/xenTro3) | US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1) | 2011-09-08 | 2011-09-08 | 2012-04-03 | 3.125% |
| 52 | latCha1 | Latimeria chalumnae | Coelacanth | Aug. 2011 (LatCha1/latCha1) | Broad LatCha1 (GCA_000225785.1) | 2012-01-11 | 2012-01-12 | 2012-04-03 | 2.715% |
| 53 | gadMor1 | Gadus morhua | Atlantic cod | May. 2010 (Genofisk GadMor_May2010/gadMor1) | Genofisk GadMor_May2010 (GCA_000231765.1) | 2011-12-29 | 2012-01-04 | 2012-04-03 | 1.726% |
| 54 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | 2012-04-03 | 2.016% |
| 55 | fr3 | Takifugu rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | 2012-04-03 | 1.789% |
| 56 | oreNil2 | Oreochromis niloticus | Nile tilapia | Jan. 2011 (Nile tilapia/oreNil2) | Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) | 2012-04-10 | 2012-04-11 | 2012-04-11 | 1.957% |
| 57 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | 2012-04-02 | 1.735% |
| 58 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) | 2010-12-03 | N/A | 2012-04-03 | 2.602% |
| 59 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2012-04-03 | 1.936% |
| 60 | petMar1 | Petromyzon marinus | Lamprey | Mar. 2007 (WUGSC 3.0/petMar1) | WUSTL v.3.0 (March 2007) | N/A | 2009-08-14 | 2012-04-04 | 1.101% |
