Hg19 100way conservation alignment: Difference between revisions
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(correct links to the other 100way pages) |
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<TD>2013-03-22</TD><TD ALIGN=RIGHT>87.764%</TD> | <TD>2013-03-22</TD><TD ALIGN=RIGHT>87.764%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Rhesus</TD> | ||
<TD> | <TD>Oct. 2010 (BGI CR_1.0/rheMac3)</TD> | ||
<TD> | <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2011-12-30</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-03</TD> | ||
<TD>2013- | <TD>2013-07-04</TD><TD ALIGN=RIGHT>82.859%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH>macFas5</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Macaca fascicularis]</TD><TD>crab-eating macaque</TD> | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH>macFas5</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Macaca fascicularis]</TD><TD>crab-eating macaque</TD> | ||
| Line 75: | Line 75: | ||
<TD>2013-06-30</TD><TD ALIGN=RIGHT>86.666%</TD> | <TD>2013-06-30</TD><TD ALIGN=RIGHT>86.666%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Papio<BR>hamadryas]</TD><TD>Baboon</TD> | |||
<TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas | |||
<TD>Nov. 2008 (Baylor Pham_1.0/papHam1)</TD> | <TD>Nov. 2008 (Baylor Pham_1.0/papHam1)</TD> | ||
<TD>Baylor BCM HGSC Pham_1.0</TD> | <TD>Baylor BCM HGSC Pham_1.0</TD> | ||
| Line 89: | Line 82: | ||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>82.810%</TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>82.810%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000409795.1/ 09]</TH><TH>chlSab1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chlorocebus_sabaeus/Chlorocebus_sabeus_1.0/ Chlorocebus sabaeus]</TD><TD>green monkey</TD> | ||
<TD> | <TD>12-Jun-2013 (GCA_000409795.1)</TD> | ||
<TD> | <TD>Vervet Genomics Consortium/Chlorocebus_sabeus 1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-30</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-30</TD> | ||
<TD>2013-06-30</TD><TD ALIGN=RIGHT> | <TD>2013-06-30</TD><TD ALIGN=RIGHT>86.446%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ | <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD> | ||
<TD>March 2009 (WUGSC 3.2/calJac3)</TD> | <TD>March 2009 (WUGSC 3.2/calJac3)</TD> | ||
<TD>WUSTL 3.2 (GCA_000004665.1)</TD> | <TD>WUSTL 3.2 (GCA_000004665.1)</TD> | ||
| Line 102: | Line 95: | ||
<TD ALIGN=RIGHT>2013-06-21</TD> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD>2010-02-11</TD><TD ALIGN=RIGHT>70.654%</TD> | <TD>2010-02-11</TD><TD ALIGN=RIGHT>70.654%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel monkey</TD> | |||
<TD>Oct. 2011 (Broad/saiBol1)</TD> | |||
<TD>Broad SaiBol1.0 (GCA_000235385.1)</TD> | |||
<TD ALIGN=RIGHT>2012-01-07</TD> | |||
<TD ALIGN=RIGHT>2012-01-09</TD> | |||
<TD>2013-06-30</TD><TD ALIGN=RIGHT>69.598%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD> | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD> | ||
| Line 117: | Line 117: | ||
<TD>2013-07-06</TD><TD ALIGN=RIGHT>46.558%</TD> | <TD>2013-07-06</TD><TD ALIGN=RIGHT>46.558%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD> | ||
<TD>May 2012 ( | <TD>Nov. 2011 (Broad/speTri2)</TD> | ||
<TD>Broad Institute (GCA_000236235.1)</TD> | |||
<TD ALIGN=RIGHT>2012-03-14</TD> | |||
<TD ALIGN=RIGHT>2012-03-15</TD> | |||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000280705.1/ 15]</TH><TH>jacJac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Jaculus_jaculus/JacJac1.0/ Jaculus jaculus]</TD><TD>lesser Egyptian jerboa</TD> | |||
<TD>31-May-2012 (GCA_000280705.1)</TD> | |||
<TD>Broad Institute/JacJac1.0</TD> | |||
<TD ALIGN=RIGHT>2013-07-15</TD> | |||
<TD ALIGN=RIGHT>2013-07-15</TD> | |||
<TD>2013-07-16</TD><TD ALIGN=RIGHT>35.106%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ 16]</TH><TH>micOch1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Microtus_ochrogaster/MicOch1.0/ Microtus ochrogaster]</TD><TD>Prairie Vole</TD> | |||
<TD>31-Oct-2012 (GCA_000317375.1)</TD> | |||
<TD>Broad Institute/MicOch1.0</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD>2013-08-27</TD><TD ALIGN=RIGHT>32.285%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000419365.1/ 17]</TH><TH>criGri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Cricetulus_griseus/C_griseus_v1.0/ Cricetulus griseus]</TD><TD>Chinese Hamster</TD> | |||
<TD>12-Jul-2013 (GCA_000419365.1)</TD> | |||
<TD>Beijing Genomics Institution-shenzhen/C_griseus_v1.0</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349665.1/ 18]</TH><TH>mesAur1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mesocricetus_auratus/MesAur1.0/ Mesocricetus auratus]</TD><TD>golden hamster</TD> | |||
<TD>29-Mar-2013 (GCA_000349665.1)</TD> | |||
<TD>Broad Institute/MesAur1.0</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD> | |||
<TD>Dec. 2011 (GRCm38/mm10)</TD> | |||
<TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD> | |||
<TD ALIGN=RIGHT>2012-02-06</TD> | |||
<TD ALIGN=RIGHT>2012-02-07</TD> | |||
<TD>2012-03-07</TD><TD ALIGN=RIGHT>35.249%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/16219 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR06 Rattus<BR>norvegicus]</TD><TD>Rat</TD> | |||
<TD>Mar. 2012 (RGSC 5.0/rn5)</TD> | |||
<TD>RGSC Rnor_5.0 (GCA_000001895.3)</TD> | |||
<TD ALIGN=RIGHT>2012-03-21</TD> | |||
<TD ALIGN=RIGHT>2012-03-21</TD> | |||
<TD>2012-06-27</TD><TD ALIGN=RIGHT>31.662%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260255.1/ 21]</TH><TH>octDeg1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Octodon_degus/OctDeg1.0/ Octodon degus]</TD><TD>brush-tailed rat</TD> | |||
<TD>13-Apr-2012 (GCA_000260255.1)</TD> | |||
<TD>Broad Institute/OctDeg1.0</TD> | |||
<TD ALIGN=RIGHT>2013-07-07</TD> | |||
<TD ALIGN=RIGHT>2013-07-07</TD> | |||
<TD>2013-07-07</TD><TD ALIGN=RIGHT>41.385%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/72441 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Heterocephalus<BR>glaber]</TD><TD>Naked mole-rat</TD> | |||
<TD>Jan. 2012 (Broad HetGla_female_1.0/hetGla2)</TD> | |||
<TD>Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)</TD> | |||
<TD ALIGN=RIGHT>2012-04-14</TD> | |||
<TD ALIGN=RIGHT>2012-04-14</TD> | |||
<TD>2013-07-17</TD><TD ALIGN=RIGHT>47.600%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea pig</TD> | |||
<TD>Feb. 2008 (Broad/cavPor3)</TD> | |||
<TD>Broad Institute cavPor3</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>43.680%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chinchilla_lanigera/ChiLan1.0/ Chinchilla<BR>lanigera]</TD><TD>Chinchilla</TD> | |||
<TD>May 2012 (ChiLan1.0/chiLan1)</TD> | |||
<TD>Broad Institute</TD> | <TD>Broad Institute</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-07-28</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-07-27</TD> | ||
<TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD> | ||
<TD> | <TD>Apr. 2009 (Broad/oryCun2)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD> | ||
<TD ALIGN=RIGHT>2009- | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>2013-06-21</TD> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD>2009-09-02</TD><TD ALIGN=RIGHT> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>44.317%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000292845.1/ 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ochotona_princeps/OchPri3.0/ Ochotona<BR>princeps]</TD><TD>Pika</TD> | |||
<TD>May 2012 (OchPri3.0/ochPri3)</TD> | |||
<TD>Broad Institute</TD> | |||
<TD ALIGN=RIGHT>2013-06-20</TD> | |||
<TD ALIGN=RIGHT>2013-06-18</TD> | |||
<TD>2013-06-18</TD><TD ALIGN=RIGHT>34.676%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13421 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Sus<BR>scrofa]</TD><TD>Pig</TD> | ||
<TD> | <TD>Aug. 2011 (SGSC Sscrofa10.2/susScr3)</TD> | ||
<TD> | <TD>SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-12</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-13</TD> | ||
<TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Vicugna<BR>pacos]</TD><TD>Alpaca</TD> | ||
<TD>Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2)</TD> | <TD>Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2)</TD> | ||
<TD>Broad Institute</TD> | <TD>Broad Institute</TD> | ||
| Line 145: | Line 222: | ||
<TD>2013-06-18</TD><TD ALIGN=RIGHT>50.193%</TD> | <TD>2013-06-18</TD><TD ALIGN=RIGHT>50.193%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 29]</TH><TH>camFer1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Camelus_ferus/CB1/ Camelus ferus]</TD><TD>Bactrian camel</TD> | ||
<TD> | <TD>25-Dec-2011 (GCA_000311805.1)</TD> | ||
<TD> | <TD>The Bactrian Camels Genome Sequencing and Analysis Consortium/CB1</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-07-12</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-07-12</TD> | ||
<TD>2013- | <TD>2013-07-13</TD><TD ALIGN=RIGHT>50.419%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD> | ||
<TD>Oct. 2011 (Baylor Ttru_1.4/turTru2)</TD> | <TD>Oct. 2011 (Baylor Ttru_1.4/turTru2)</TD> | ||
<TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD> | <TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD> | ||
| Line 159: | Line 236: | ||
<TD>2013-08-20</TD><TD ALIGN=RIGHT>51.158%</TD> | <TD>2013-08-20</TD><TD ALIGN=RIGHT>51.158%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ 31]</TH><TH>orcOrc1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Orcinus orca]</TD><TD>Killer whale</TD> | ||
<TD> | <TD>31-Jan-2013 (GCA_000331955.1)</TD> | ||
<TD> | <TD>Marine mammals/Oorc_1.1</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-08-20</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-08-20</TD> | ||
<TD>2013- | <TD>2013-08-01</TD><TD ALIGN=RIGHT>52.072%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400835.1/ 32]</TH><TH>panHod1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pantholops_hodgsonii/PHO1.0/ Pantholops hodgsonii]</TD><TD>Tibetan antelope</TD> | ||
<TD> | <TD>28-May-2013 (GCA_000400835.1)</TD> | ||
<TD> | <TD>BGI/PHO1.0</TD> | ||
<TD ALIGN=RIGHT>2013-07- | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD ALIGN=RIGHT>2013-07- | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD>2013-07- | <TD>2013-07-17</TD><TD ALIGN=RIGHT>46.863%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/82 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD> | ||
<TD> | <TD>Oct. 2011 (Baylor Btau_4.6.1/bosTau7)</TD> | ||
<TD> | <TD>Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-01-04</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-01-06</TD> | ||
<TD> | <TD>2012-01-23</TD><TD ALIGN=RIGHT>46.971%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298735.1/ 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ovis_aries/Oar_v3.1/ Ovis<BR>aries]</TD><TD>Sheep</TD> | ||
<TD> | <TD>Aug. 2012 (ISGC Oar_v3.1/oviAri3)</TD> | ||
<TD> | <TD>International Sheep Genome Consortium</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-10</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-09</TD> | ||
<TD> | <TD>2013-06-26</TD><TD ALIGN=RIGHT>46.833%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317765.1/ 35]</TH><TH>capHir1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Capra_hircus/CHIR_1.0/ Capra hircus]</TD><TD>domestic goat</TD> | ||
<TD> | <TD>31-May-2012 (GCA_000317765.1)</TD> | ||
<TD> | <TD>International Goat Genome Consortium/CHIR_1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD> | <TD>2013-07-17</TD><TD ALIGN=RIGHT>46.498%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD> | ||
<TD> | <TD>Sep. 2007 (Broad/equCab2)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute EquCab2</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-08-14</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>57.050%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000283155.1/ 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ceratotherium_simum/CerSimSim1.0/ Ceratotherium<BR>simum]</TD><TD>White rhinoceros</TD> | ||
<TD>May 2012 (CerSimSim1.0/cerSim1)</TD> | |||
<TD>Broad Institute</TD> | |||
<TD ALIGN=RIGHT>2012-08-28</TD> | |||
<TD ALIGN=RIGHT>2012-08-28</TD> | |||
<TD>2012-10-19</TD><TD ALIGN=RIGHT>58.103%</TD> | |||
<TD> | |||
<TD>Broad Institute | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/16726 | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16726 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANG02 Felis<BR>catus]</TD><TD>Cat</TD> | ||
<TD>Sep. 2011 (ICGSC Felis_catus 6.2/felCat5)</TD> | <TD>Sep. 2011 (ICGSC Felis_catus 6.2/felCat5)</TD> | ||
<TD>International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2)</TD> | <TD>International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2)</TD> | ||
| Line 229: | Line 292: | ||
<TD>2013-07-13</TD><TD ALIGN=RIGHT>52.426%</TD> | <TD>2013-07-13</TD><TD ALIGN=RIGHT>52.426%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mustela_putorius/MusPutFur1.0/ Mustela<BR>putorius<BR>furo]</TD><TD>Ferret </TD> | ||
<TD> | <TD>Apr. 2011 (MusPutFur1.0/musFur1)</TD> | ||
<TD> | <TD>Ferret Genome Sequencing Consortium</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-03-05</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-03-05</TD> | ||
<TD> | <TD>2013-07-12</TD><TD ALIGN=RIGHT>50.993%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/85 | <TH>[http://www.ncbi.nlm.nih.gov/genome/85 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD> | ||
<TD>Sep. 2011 (Broad CanFam3.1/canFam3)</TD> | <TD>Sep. 2011 (Broad CanFam3.1/canFam3)</TD> | ||
<TD>Broad CanFam3.1 (GCA_000002285.2)</TD> | <TD>Broad CanFam3.1 (GCA_000002285.2)</TD> | ||
| Line 243: | Line 306: | ||
<TD>2012-07-04</TD><TD ALIGN=RIGHT>51.848%</TD> | <TD>2012-07-04</TD><TD ALIGN=RIGHT>51.848%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH | <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD> | ||
<TD>Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)</TD> | |||
<TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD> | |||
<TD ALIGN=RIGHT>2010-02-03</TD> | |||
<TD>Dec. | |||
<TD | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT>2013-06-21</TD> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2010-02-04</TD><TD ALIGN=RIGHT>50.022%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ 42]</TH><TH>odoRosDiv1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Odobenus_rosmarus/Oros_1.0/ Odobenus rosmarus divergens]</TD><TD>Pacific walrus</TD> | ||
<TD>16-Jan-2013 (GCA_000321225.1)</TD> | |||
<TD>Marine mammals/Oros_1.0</TD> | |||
<TD ALIGN=RIGHT>2013-07-12</TD> | |||
<TD ALIGN=RIGHT>2013-07-12</TD> | |||
<TD>2013-07-13</TD><TD ALIGN=RIGHT>53.559%</TD> | |||
<TD> | |||
<TD> | |||
<TD ALIGN=RIGHT>2013-07- | |||
<TD ALIGN=RIGHT>2013-07- | |||
<TD>2013-07- | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ 43]</TH><TH>lepWed1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Leptonychotes_weddellii/LepWed1.0/ Leptonychotes weddellii]</TD><TD>Weddell seal</TD> | ||
<TD>29-Mar-2013 (GCA_000349705.1)</TD> | <TD>29-Mar-2013 (GCA_000349705.1)</TD> | ||
<TD>Broad Institute/LepWed1.0</TD> | <TD>Broad Institute/LepWed1.0</TD> | ||
| Line 285: | Line 327: | ||
<TD>2013-07-12</TD><TD ALIGN=RIGHT>52.424%</TD> | <TD>2013-07-12</TD><TD ALIGN=RIGHT>52.424%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 44]</TH><TH>pteAle1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pteropus_alecto/ASM32557v1/ Pteropus alecto]</TD><TD>Black Flying-fox</TD> | ||
<TD> | <TD>06-Aug-2012 (GCA_000325575.1)</TD> | ||
<TD> | <TD>BGI/ASM32557v1</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD>2013- | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | |||
<TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD> | |||
<TD>Jul. 2008 (Broad/pteVam1)</TD> | |||
<TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD> | |||
<TD ALIGN=RIGHT>2009-09-02</TD> | |||
<TD ALIGN=RIGHT>2012-05-02</TD> | |||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>45.414%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ 46]</TH><TH>myoDav1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Myotis_davidii/ASM32734v1/ Myotis Davidii]</TD><TD>David's Myotis (bat)</TD> | |||
<TD>17-Aug-2012 (GCA_000327345.1)</TD> | |||
<TD>BGI/ASM32734v1</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/614 | <TH>[http://www.ncbi.nlm.nih.gov/genome/614 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD> | ||
<TD>Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2)</TD> | <TD>Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2)</TD> | ||
<TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD> | <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD> | ||
| Line 299: | Line 355: | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 48]</TH><TH>eptFus1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Eptesicus_fuscus/EptFus1.0/ Eptesicus fuscus]</TD><TD>big brown bat</TD> | ||
<TD>25-Jul-2012 (GCA_000308155.1)</TD> | <TD>25-Jul-2012 (GCA_000308155.1)</TD> | ||
<TD>Broad Institute/EptFus1.0</TD> | <TD>Broad Institute/EptFus1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296755.1/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Erinaceus_europaeus/EriEur2.0/ Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD> | ||
<TD> | <TD>May 2012 (EriEur2.0/eriEur2)</TD> | ||
<TD> | <TD>Broad Institute EriEur2.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-12</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-07</TD> | ||
<TD> | <TD>2013-07-09</TD><TD ALIGN=RIGHT>26.149%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000181275.2/ 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Sorex_araneus/SorAra2.0/ Sorex<BR>araneus]</TD><TD>Shrew</TD> | ||
<TD> | <TD>Aug. 2008 (Broad/sorAra2)</TD> | ||
<TD> | <TD>Broad Institute SorAra2.0</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-05-29</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-05-29</TD> | ||
<TD>2013- | <TD>2013-06-18</TD><TD ALIGN=RIGHT>27.681%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260355.1/ 51]</TH><TH>conCri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Condylura_cristata/ConCri1.0/ Condylura cristata]</TD><TD>Star-nosed mole</TD> | ||
<TD> | <TD>14-Mar-2012 (GCA_000260355.1)</TD> | ||
<TD> | <TD>Broad Institute/ConCri1.0</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-07-09</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-07-09</TD> | ||
<TD>2013- | <TD>2013-07-10</TD><TD ALIGN=RIGHT>37.034%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www. | <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD> | ||
<TD> | <TD>Jul. 2009 (Broad/loxAfr3)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>46.636%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ 53]</TH><TH>eleEdw1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Elephantulus_edwardii/EleEdw1.0/ Elephantulus edwardii]</TD><TD>Cape elephant shrew</TD> | ||
<TD>01-Aug-2012 (GCA_000299155.1)</TD> | <TD>01-Aug-2012 (GCA_000299155.1)</TD> | ||
<TD>Broad Institute/EleEdw1.0</TD> | <TD>Broad Institute/EleEdw1.0</TD> | ||
| Line 341: | Line 397: | ||
<TD>2013-07-09</TD><TD ALIGN=RIGHT>27.675%</TD> | <TD>2013-07-09</TD><TD ALIGN=RIGHT>27.675%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 54]</TH><TH>chrAsi1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chrysochloris_asiatica/ChrAsi1.0/ Chrysochloris asiatica]</TD><TD>Cape golden mole</TD> | ||
<TD> | <TD>01-Aug-2012 (GCA_000296735.1)</TD> | ||
<TD>Broad Institute/ | <TD>Broad Institute/ChrAsi1.0</TD> | ||
<TD ALIGN=RIGHT>2013-07- | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD ALIGN=RIGHT>2013-07- | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD>2013-07- | <TD>2013-07-09</TD><TD ALIGN=RIGHT>34.209%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298275.1/ 55]</TH><TH>oryAfe1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orycteropus_afer/OryAfe1.0/ Orycteropus afer]</TD><TD>Aardvark</TD> | ||
<TD>May | <TD>24-May-2012 (GCA_000298275.1)</TD> | ||
<TD>Broad Institute</TD> | <TD>Broad Institute/OryAfe1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD> | <TD>2013-07-09</TD><TD ALIGN=RIGHT>41.668%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Echinops_telfairi/EchTel2.0/ Echinops<BR>telfairi]</TD><TD>Tenrec</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ | |||
<TD>Nov. 2012 (Broad/echTel2)</TD> | <TD>Nov. 2012 (Broad/echTel2)</TD> | ||
<TD>Broad/EchTel2.0</TD> | <TD>Broad/EchTel2.0</TD> | ||
| Line 390: | Line 418: | ||
<TD>2013-06-17</TD><TD ALIGN=RIGHT>30.135%</TD> | <TD>2013-06-17</TD><TD ALIGN=RIGHT>30.135%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD> | ||
<TD> | <TD>Oct. 2011 (Broad v1.0/triMan1)</TD> | ||
<TD> | <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-03-28</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-03-29</TD> | ||
<TD> | <TD>2013-07-11</TD><TD ALIGN=RIGHT>46.580%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12594 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD> | ||
<TD> | <TD>Dec. 2011 (Baylor/dasNov3)</TD> | ||
<TD> | <TD>Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-04-12</TD> | ||
<TD ALIGN=RIGHT>2012-04-13</TD> | |||
<TD>2013-07-09</TD><TD ALIGN=RIGHT>46.571%</TD> | |||
<TD ALIGN=RIGHT> | |||
<TD>2013-07- | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.broadinstitute.org/mammals/opossum | <TH>[http://www.broadinstitute.org/mammals/opossum 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD> | ||
<TD>Oct. 2006 (Broad/monDom5)</TD> | <TD>Oct. 2006 (Broad/monDom5)</TD> | ||
<TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD> | <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD> | ||
| Line 446: | Line 439: | ||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>14.358%</TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>14.358%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/3066 | <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian devil</TD> | ||
<TD>Feb. 2011 (WTSI Devil_ref v7.0/sarHar1)</TD> | <TD>Feb. 2011 (WTSI Devil_ref v7.0/sarHar1)</TD> | ||
<TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD> | <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD> | ||
| Line 453: | Line 446: | ||
<TD>2013-07-10</TD><TD ALIGN=RIGHT>7.414%</TD> | <TD>2013-07-10</TD><TD ALIGN=RIGHT>7.414%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/233 61]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD> | |||
<TD>Sep. 2009 (TWGS Meug_1.1/macEug2)</TD> | |||
<TD>TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1)</TD> | |||
<TD ALIGN=RIGHT>2010-11-05</TD> | |||
<TD ALIGN=RIGHT>2011-12-02</TD> | |||
<TD>2013-07-11</TD><TD ALIGN=RIGHT>6.534%</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/ | |||
<TD> | |||
<TD> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/110 | <TH>[http://www.ncbi.nlm.nih.gov/genome/110 62]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD> | ||
<TD>Mar. 2007 (WUGSC 5.0.1/ornAna1)</TD> | <TD>Mar. 2007 (WUGSC 5.0.1/ornAna1)</TD> | ||
<TD>WUSTL version 5.0.1</TD> | <TD>WUSTL version 5.0.1</TD> | ||
| Line 488: | Line 460: | ||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>7.627%</TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>7.627%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ 63]</TH><TH>falChe1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_cherrug/F_cherrug_v1.0/ Falco cherrug]</TD><TD>Saker falcon</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ | |||
<TD>05-Feb-2013 (GCA_000337975.1)</TD> | <TD>05-Feb-2013 (GCA_000337975.1)</TD> | ||
<TD>BGI/F_cherrug_v1.0</TD> | <TD>BGI/F_cherrug_v1.0</TD> | ||
| Line 537: | Line 467: | ||
<TD>2013-06-27</TD><TD ALIGN=RIGHT>3.812%</TD> | <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.812%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ 64]</TH><TH>falPer1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_peregrinus/F_peregrinus_v1.0/ Falco peregrinus]</TD><TD>peregrine falcon</TD> | ||
<TD>05-Feb-2013 (GCA_000337955.1)</TD> | <TD>05-Feb-2013 (GCA_000337955.1)</TD> | ||
<TD>BGI/F_peregrinus_v1.0</TD> | <TD>BGI/F_peregrinus_v1.0</TD> | ||
| Line 544: | Line 474: | ||
<TD>2013-06-27</TD><TD ALIGN=RIGHT>3.879%</TD> | <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.879%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ 65]</TH><TH>ficAlb2</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ficedula_albicollis/FicAlb1.5/ Ficedula albicollis]</TD><TD>Collared Flycatcher</TD> | ||
<TD>27-Jun-2013 (GCA_000247815.2)</TD> | |||
<TD>Uppsala University/FicAlb1.5</TD> | |||
<TD ALIGN=RIGHT>2013-06-29</TD> | |||
<TD ALIGN=RIGHT>2013-06-29</TD> | |||
<TD>2013-06-29</TD><TD ALIGN=RIGHT>3.715%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ 66]</TH><TH>zonAlb1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Zonotrichia_albicollis/ASM38545v1/ Zonotrichia albicollis]</TD><TD>White-throated sparrow</TD> | |||
<TD>30-Apr-2013 (GCA_000385455.1)</TD> | |||
<TD>White-throated sparrow consortium/ASM38545v1</TD> | |||
<TD ALIGN=RIGHT>2013-06-26</TD> | |||
<TD ALIGN=RIGHT>2013-06-26</TD> | |||
<TD>2013-06-26</TD><TD ALIGN=RIGHT>3.476%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/156703 67]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKZB01 Geospiza<BR>fortis]</TD><TD>Medium ground finch</TD> | |||
<TD>Apr. 2012 (GeoFor_1.0/geoFor1)</TD> | |||
<TD>Beijing Genomics Institute</TD> | |||
<TD ALIGN=RIGHT>2012-07-26</TD> | |||
<TD ALIGN=RIGHT>2012-07-26</TD> | |||
<TD>2012-07-29</TD><TD ALIGN=RIGHT>3.503%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000151805.2/ 68]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Taeniopygia_guttata/Taeniopygia_guttata-3.2.4/ Taeniopygia<BR>guttata]</TD><TD>Zebra finch</TD> | |||
<TD>Feb. 2013 (WashU taeGut324/taeGut2)</TD> | |||
<TD>Washington University School of Medicine</TD> | |||
<TD ALIGN=RIGHT>2013-06-05</TD> | |||
<TD ALIGN=RIGHT>2013-06-05</TD> | |||
<TD>2013-06-17</TD><TD ALIGN=RIGHT>5.321%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331425.1/ 69]</TH><TH>pseHum1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pseudopodoces_humilis/PseHum1.0/ Pseudopodoces humilis]</TD><TD>Tibetan ground jay</TD> | |||
<TD>11-Jan-2013 (GCA_000331425.1)</TD> | |||
<TD>Beijing Genomics Institute (BGI)-Shenzhen/PseHum1.0</TD> | |||
<TD ALIGN=RIGHT>2013-06-27</TD> | |||
<TD ALIGN=RIGHT>2013-06-27</TD> | |||
<TD>2013-06-29</TD><TD ALIGN=RIGHT>3.982%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/10765 70]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD> | |||
<TD>Sep. 2011 (WUSTL v6.3/melUnd1)</TD> | |||
<TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD> | |||
<TD ALIGN=RIGHT>2012-03-27</TD> | |||
<TD ALIGN=RIGHT>2012-03-28</TD> | |||
<TD>2013-06-27</TD><TD ALIGN=RIGHT>3.577%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ 71]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1 amaVit1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Amazona_vittata/AV1/ Amazona<BR>vittata]</TD><TD>Parrot</TD> | |||
<TD>Jan. 2013 (AV1/amaVit1)</TD> | <TD>Jan. 2013 (AV1/amaVit1)</TD> | ||
<TD>Puerto Rican Parrot Genome Project AV1</TD> | <TD>Puerto Rican Parrot Genome Project AV1</TD> | ||
| Line 551: | Line 523: | ||
<TD>2013-06-28</TD><TD ALIGN=RIGHT>3.298%</TD> | <TD>2013-06-28</TD><TD ALIGN=RIGHT>3.298%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ 72]</TH><TH>araMac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ara_macao/SMACv1.1/ Ara macao]</TD><TD>Scarlet Macaw</TD> | ||
<TD>26-Jun-2013 (GCA_000400695.1)</TD> | <TD>26-Jun-2013 (GCA_000400695.1)</TD> | ||
<TD>Texas A&M University/SMACv1.1</TD> | <TD>Texas A&M University/SMACv1.1</TD> | ||
| Line 558: | Line 530: | ||
<TD>2013-06-29</TD><TD ALIGN=RIGHT>2.912%</TD> | <TD>2013-06-29</TD><TD ALIGN=RIGHT>2.912%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ 73]</TH><TH>colLiv1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Columba_livia/Cliv_1.0/ Columba livia]</TD><TD>Rock pigeon</TD> | ||
<TD> | <TD>11-Feb-2013 (GCA_000337935.1)</TD> | ||
<TD> | <TD>BGI/Cliv_1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-27</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-27</TD> | ||
<TD>2013-06- | <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.683%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000355885.1/ 74]</TH><TH>anaPla1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anas_platyrhynchos/BGI_duck_1.0/ Anas platyrhynchos]</TD><TD>Mallard duck</TD> | ||
<TD> | <TD>26-Apr-2013 (GCA_000355885.1)</TD> | ||
<TD>Beijing | <TD>State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing/BGI_duck_1.0</TD> | ||
<TD ALIGN=RIGHT>2013-06-27</TD> | <TD ALIGN=RIGHT>2013-06-27</TD> | ||
<TD ALIGN=RIGHT>2013-06-27</TD> | <TD ALIGN=RIGHT>2013-06-27</TD> | ||
<TD>2013-06-29</TD><TD ALIGN=RIGHT>3. | <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.509%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/111 75]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD> | |||
<TD>Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4)</TD> | |||
<TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD> | |||
<TD ALIGN=RIGHT>2012-01-04</TD> | |||
<TD ALIGN=RIGHT>2012-01-04</TD> | |||
<TD>2013-06-29</TD><TD ALIGN=RIGHT>3.684%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 76]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD> | ||
<TD> | <TD>Dec. 2009 (TGC Turkey_2.01/melGal1)</TD> | ||
<TD> | <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2010-11-04</TD> | ||
<TD ALIGN=RIGHT>2013-06- | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2011-03-28</TD><TD ALIGN=RIGHT>2.645%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000281125.1/ 77]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Alligator_mississippiensis/allMis0.2/ Alligator<BR>mississippiensis]</TD><TD>American alligator</TD> | ||
<TD> | <TD>Aug. 2012 (allMis0.2/allMis1)</TD> | ||
<TD> | <TD>International Crocodilian Genomes Working Group</TD> | ||
<TD ALIGN=RIGHT>2013-06- | <TD ALIGN=RIGHT>2013-06-07</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-08-28</TD> | ||
<TD>2013-06- | <TD>2013-06-28</TD><TD ALIGN=RIGHT>7.084%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000344595.1/ 78]</TH><TH>cheMyd1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Chelonia_mydas/CheMyd_1.0/ Chelonia mydas]</TD><TD>green seaturtle</TD> | ||
<TD> | <TD>18-Mar-2013 (GCA_000344595.1)</TD> | ||
<TD> | <TD>BGI/CheMyd_1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-26</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-26</TD> | ||
<TD> | <TD>2013-08-28</TD><TD ALIGN=RIGHT>3.696%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/12107 79]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted turtle</TD> | ||
<TD> | <TD>Dec. 2011 (v3.0.1/chrPic1)</TD> | ||
<TD> | <TD>International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-03-27</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-03-29</TD> | ||
<TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000230535.1/ 80]</TH><TH>pelSin1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pelodiscus_sinensis/PelSin_1.0/ Pelodiscus sinensis]</TD><TD>Soft-shell Turtle</TD> | ||
<TD> | <TD>01-Oct-2011 (GCA_000230535.1)</TD> | ||
<TD> | <TD>Soft-shell Turtle Genome Consortium/PelSin_1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-01</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-01</TD> | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ 81]</TH><TH>apaSpi1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Apalone_spinifera/ASM38561v1/ Apalone spinifera]</TD><TD>spiny softshell turtle</TD> | ||
<TD>03-May-2013 (GCA_000385615.1)</TD> | |||
<TD>WUGSC/ASM38561v1</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD>2013-08-28</TD><TD ALIGN=RIGHT>2.952%</TD> | |||
</TR><TR> | |||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 82]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD> | |||
<TD>May 2010 (Broad AnoCar2.0/anoCar2)</TD> | |||
<TD>Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)</TD> | |||
<TD ALIGN=RIGHT>2011-04-12</TD> | |||
<TD ALIGN=RIGHT>2011-04-13</TD> | |||
<TD>2011-04-19</TD><TD ALIGN=RIGHT>3.552%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ 83]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/Xtropicalis_v7/ Xenopus<BR>tropicalis]</TD><TD>X. tropicalis</TD> | |||
<TD>Sep. 2012 (JGI 7.0/xenTro7)</TD> | <TD>Sep. 2012 (JGI 7.0/xenTro7)</TD> | ||
<TD>US DOE Joint Genome Institute (JGI-PGF)</TD> | <TD>US DOE Joint Genome Institute (JGI-PGF)</TD> | ||
| Line 614: | Line 607: | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 84]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD> | ||
<TD>Aug. 2011 (Broad/latCha1)</TD> | <TD>Aug. 2011 (Broad/latCha1)</TD> | ||
<TD>Broad LatCha1 (GCA_000225785.1)</TD> | <TD>Broad LatCha1 (GCA_000225785.1)</TD> | ||
| Line 621: | Line 614: | ||
<TD>2013-07-16</TD><TD ALIGN=RIGHT>2.749%</TD> | <TD>2013-07-16</TD><TD ALIGN=RIGHT>2.749%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 85]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD> | ||
<TD> | <TD>Mar. 2007 (Genoscope 8.0/tetNig2)</TD> | ||
<TD> | <TD>Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000)</TD> | ||
<TD ALIGN=RIGHT>2011- | <TD ALIGN=RIGHT>2010-06-07</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.712%</TD> | ||
</TR><TR> | |||
<TH>[http://www.fugu-sg.org/ 86]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD> | |||
<TD>Oct. 2011 (FUGU5/fr3)</TD> | |||
<TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD> | |||
<TD ALIGN=RIGHT>2011-11-16</TD> | |||
<TD ALIGN=RIGHT>2011-11-17</TD> | |||
<TD>2013-08-20</TD><TD ALIGN=RIGHT>1.703%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ 87]</TH><TH>takFla1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Takifugu_flavidus/version_1_of_Takifugu_flavidus_genome/ Takifugu flavidus]</TD><TD>Tawny puffer fish</TD> | ||
<TD> | <TD>30-May-2013 (GCA_000400755.1)</TD> | ||
<TD> | <TD>IOCAS/version 1 of Takifugu flavidus genome</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
| Line 642: | Line 642: | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ 89]</TH><TH>neoBri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Neolamprologus_brichardi/NeoBri1.0/ Neolamprologus brichardi]</TD><TD>Princess of Burundi</TD> | ||
<TD>31-May-2011 (GCA_000239395.1)</TD> | |||
<TD>Broad Institute of MIT and Harvard/NeoBri1.0</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | |||
<TD> | |||
<TD> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ 90]</TH><TH>hapBur1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Haplochromis_burtoni/AstBur1.0/ Haplochromis burtoni]</TD><TD>Burton's mouthbreeder</TD> | ||
<TD>12-Oct-2011 (GCA_000239415.1)</TD> | <TD>12-Oct-2011 (GCA_000239415.1)</TD> | ||
<TD>Broad Institute of MIT and Harvard/AstBur1.0</TD> | <TD>Broad Institute of MIT and Harvard/AstBur1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ 91]</TH><TH>mayZeb1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Maylandia_zebra/MetZeb1.1/ Maylandia zebra]</TD><TD>a cichlid fish</TD> | ||
<TD>08-Mar-2012 (GCA_000238955.2)</TD> | <TD>08-Mar-2012 (GCA_000238955.2)</TD> | ||
<TD>Broad Institute/MetZeb1.1</TD> | <TD>Broad Institute/MetZeb1.1</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ 92]</TH><TH>punNye1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pundamilia_nyererei/PunNye1.0/ Pundamilia nyererei]</TD><TD>a cichlid fish</TD> | ||
<TD>12-Oct-2011 (GCA_000239375.1)</TD> | <TD>12-Oct-2011 (GCA_000239375.1)</TD> | ||
<TD>Broad Institute of MIT and Harvard/PunNye1.0</TD> | <TD>Broad Institute of MIT and Harvard/PunNye1.0</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http:// | <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 93]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD> | ||
<TD>Oct. | <TD>Oct. 2005 (NIG/UT MEDAKA1/oryLat2)</TD> | ||
<TD> | <TD>NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD>2013-08- | <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.849%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ 94]</TH><TH>xipMac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xiphophorus_maculatus/Xiphophorus_maculatus-4.4.2/ Xiphophorus maculatus]</TD><TD>southern platyfish</TD> | |||
<TD>02-Jan-2012 (GCA_000241075.1)</TD> | |||
<TD>Washington University School of Medicine/Xiphophorus_maculatus-4.4.2</TD> | |||
<TD ALIGN=RIGHT>2013-07-01</TD> | |||
<TD ALIGN=RIGHT>2013-07-01</TD> | |||
<TD>2013-08-28</TD><TD ALIGN=RIGHT>1.842%</TD> | |||
</TR><TR> | |||
<TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 95]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD> | |||
<TD>Feb. 2006 (Broad/gasAcu1)</TD> | |||
<TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>1.916%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/2661 96]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic cod</TD> | ||
<TD> | <TD>May 2010 (Genofisk GadMor_May2010/gadMor1)</TD> | ||
<TD> | <TD>Genofisk GadMor_May2010 (GCA_000231765.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2011-12-29</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-04</TD> | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
| Line 705: | Line 705: | ||
<TD>2010-12-18</TD><TD ALIGN=RIGHT>2.790%</TD> | <TD>2010-12-18</TD><TD ALIGN=RIGHT>2.790%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http:// | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000372685.1/ 98]</TH><TH>astMex1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Astyanax_mexicanus/Astyanax_mexicanus-1.0.2/ Astyanax mexicanus]</TD><TD>Mexican tetra (cavefish)</TD> | ||
<TD> | <TD>23-Apr-2013 (GCA_000372685.1)</TD> | ||
<TD> | <TD>Aquatic Genome Models/Astyanax_mexicanus-1.0.2</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000242695.1/ 99]</TH><TH>lepOcu1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Lepisosteus_oculatus/LepOcu1/ Lepisosteus oculatus]</TD><TD>Spotted Gar</TD> | ||
<TD>02- | <TD>02-Dec-2011 (GCA_000242695.1)</TD> | ||
<TD> | <TD>Broad Institute of MIT and Harvard/LepOcu1</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
Revision as of 22:12, 28 August 2013
see also
- 100way statistics interactive table
- Human 100-way Hg19 100way Genome size statistics
- Human 100-way Hg19 100way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on hg19 |
% of hg19 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | 2012-04-19 | N/A | N/A |
| 02 | panTro4 | Pan troglodytes | Chimp | Feb. 2011 (CSAC 2.1.4/panTro4) | CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) | 2012-01-09 | 2012-01-09 | 2013-01-25 | 95.279% |
| 03 | gorGor3 | Gorilla gorilla gorilla | Gorilla | May 2011 (gorGor3.1/gorGor3) | Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) | 2011-11-16 | 2013-06-21 | 2011-10-17 | 89.876% |
| 04 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | 2013-06-21 | 2009-08-15 | 91.350% |
| 05 | nomLeu3 | Nomascus leucogenys | Gibbon | Oct. 2012 (GGSC Nleu3.0/nomLeu3) | Gibbon Genome Sequencing Consortium | 2013-03-04 | 2013-03-01 | 2013-03-22 | 87.764% |
| 06 | rheMac3 | Macaca mulatta | Rhesus | Oct. 2010 (BGI CR_1.0/rheMac3) | Beijing Genomics Institute, Shenzhen (GCA_000230795.1) | 2011-12-30 | 2012-01-03 | 2013-07-04 | 82.859% |
| 07 | macFas5 | Macaca fascicularis | crab-eating macaque | 12-Jun-2013 (GCA_000364345.1) | Washington University (WashU)/Macaca_fascicularis_5.0 | 2013-06-30 | 2013-06-30 | 2013-06-30 | 86.666% |
| 08 | papHam1 | Papio hamadryas | Baboon | Nov. 2008 (Baylor Pham_1.0/papHam1) | Baylor BCM HGSC Pham_1.0 | 2009-09-02 | 2012-05-03 | 2009-09-02 | 82.810% |
| 09 | chlSab1 | Chlorocebus sabaeus | green monkey | 12-Jun-2013 (GCA_000409795.1) | Vervet Genomics Consortium/Chlorocebus_sabeus 1.0 | 2013-06-30 | 2013-06-30 | 2013-06-30 | 86.446% |
| 10 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | 2013-06-21 | 2010-02-11 | 70.654% |
| 11 | saiBol1 | Saimiri boliviensis | Squirrel monkey | Oct. 2011 (Broad/saiBol1) | Broad SaiBol1.0 (GCA_000235385.1) | 2012-01-07 | 2012-01-09 | 2013-06-30 | 69.598% |
| 12 | otoGar3 | Otolemur garnettii | Bushbaby | Mar. 2011 (Broad/otoGar3) | Broad Institute (GCA_000181295.3) | 2012-03-13 | 2012-03-14 | 2013-07-02 | 54.830% |
| 13 | tupChi1 | Tupaia chinensis | Chinese tree shrew | 31-Jan-2013 (GCA_000334495.1) | BGI/TupChi_1.0 | 2013-07-05 | 2013-07-05 | 2013-07-06 | 46.558% |
| 14 | speTri2 | Spermophilus tridecemlineatus | Squirrel | Nov. 2011 (Broad/speTri2) | Broad Institute (GCA_000236235.1) | 2012-03-14 | 2012-03-15 | N/A | N/A |
| 15 | jacJac1 | Jaculus jaculus | lesser Egyptian jerboa | 31-May-2012 (GCA_000280705.1) | Broad Institute/JacJac1.0 | 2013-07-15 | 2013-07-15 | 2013-07-16 | 35.106% |
| 16 | micOch1 | Microtus ochrogaster | Prairie Vole | 31-Oct-2012 (GCA_000317375.1) | Broad Institute/MicOch1.0 | 2013-08-26 | 2013-08-26 | 2013-08-27 | 32.285% |
| 17 | criGri1 | Cricetulus griseus | Chinese Hamster | 12-Jul-2013 (GCA_000419365.1) | Beijing Genomics Institution-shenzhen/C_griseus_v1.0 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 18 | mesAur1 | Mesocricetus auratus | golden hamster | 29-Mar-2013 (GCA_000349665.1) | Broad Institute/MesAur1.0 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 19 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2012-03-07 | 35.249% |
| 20 | rn5 | Rattus norvegicus | Rat | Mar. 2012 (RGSC 5.0/rn5) | RGSC Rnor_5.0 (GCA_000001895.3) | 2012-03-21 | 2012-03-21 | 2012-06-27 | 31.662% |
| 21 | octDeg1 | Octodon degus | brush-tailed rat | 13-Apr-2012 (GCA_000260255.1) | Broad Institute/OctDeg1.0 | 2013-07-07 | 2013-07-07 | 2013-07-07 | 41.385% |
| 22 | hetGla2 | Heterocephalus glaber | Naked mole-rat | Jan. 2012 (Broad HetGla_female_1.0/hetGla2) | Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) | 2012-04-14 | 2012-04-14 | 2013-07-17 | 47.600% |
| 23 | cavPor3 | Cavia porcellus | Guinea pig | Feb. 2008 (Broad/cavPor3) | Broad Institute cavPor3 | 2009-08-15 | 2009-08-15 | 2009-09-02 | 43.680% |
| 24 | chiLan1 | Chinchilla lanigera | Chinchilla | May 2012 (ChiLan1.0/chiLan1) | Broad Institute | 2012-07-28 | 2012-07-27 | N/A | N/A |
| 25 | oryCun2 | Oryctolagus cuniculus | Rabbit | Apr. 2009 (Broad/oryCun2) | Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) | 2009-09-02 | 2013-06-21 | 2009-09-02 | 44.317% |
| 26 | ochPri3 | Ochotona princeps | Pika | May 2012 (OchPri3.0/ochPri3) | Broad Institute | 2013-06-20 | 2013-06-18 | 2013-06-18 | 34.676% |
| 27 | susScr3 | Sus scrofa | Pig | Aug. 2011 (SGSC Sscrofa10.2/susScr3) | SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) | 2012-04-12 | 2012-04-13 | N/A | N/A |
| 28 | vicPac2 | Vicugna pacos | Alpaca | Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) | Broad Institute | 2013-06-10 | 2013-06-10 | 2013-06-18 | 50.193% |
| 29 | camFer1 | Camelus ferus | Bactrian camel | 25-Dec-2011 (GCA_000311805.1) | The Bactrian Camels Genome Sequencing and Analysis Consortium/CB1 | 2013-07-12 | 2013-07-12 | 2013-07-13 | 50.419% |
| 30 | turTru2 | Tursiops truncatus | Dolphin | Oct. 2011 (Baylor Ttru_1.4/turTru2) | Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) | 2012-04-14 | 2012-04-14 | 2013-08-20 | 51.158% |
| 31 | orcOrc1 | Orcinus orca | Killer whale | 31-Jan-2013 (GCA_000331955.1) | Marine mammals/Oorc_1.1 | 2013-08-20 | 2013-08-20 | 2013-08-01 | 52.072% |
| 32 | panHod1 | Pantholops hodgsonii | Tibetan antelope | 28-May-2013 (GCA_000400835.1) | BGI/PHO1.0 | 2013-07-15 | 2013-07-15 | 2013-07-17 | 46.863% |
| 33 | bosTau7 | Bos taurus | Cow | Oct. 2011 (Baylor Btau_4.6.1/bosTau7) | Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) | 2012-01-04 | 2012-01-06 | 2012-01-23 | 46.971% |
| 34 | oviAri3 | Ovis aries | Sheep | Aug. 2012 (ISGC Oar_v3.1/oviAri3) | International Sheep Genome Consortium | 2013-06-10 | 2013-06-09 | 2013-06-26 | 46.833% |
| 35 | capHir1 | Capra hircus | domestic goat | 31-May-2012 (GCA_000317765.1) | International Goat Genome Consortium/CHIR_1.0 | 2013-07-15 | 2013-07-15 | 2013-07-17 | 46.498% |
| 36 | equCab2 | Equus caballus | Horse | Sep. 2007 (Broad/equCab2) | Broad Institute EquCab2 | 2009-08-14 | 2013-06-21 | 2009-09-02 | 57.050% |
| 37 | cerSim1 | Ceratotherium simum | White rhinoceros | May 2012 (CerSimSim1.0/cerSim1) | Broad Institute | 2012-08-28 | 2012-08-28 | 2012-10-19 | 58.103% |
| 38 | felCat5 | Felis catus | Cat | Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) | International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2) | 2012-04-12 | 2012-04-13 | 2013-07-13 | 52.426% |
| 39 | musFur1 | Mustela putorius furo | Ferret | Apr. 2011 (MusPutFur1.0/musFur1) | Ferret Genome Sequencing Consortium | 2013-03-05 | 2013-03-05 | 2013-07-12 | 50.993% |
| 40 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2012-07-04 | 51.848% |
| 41 | ailMel1 | Ailuropoda melanoleuca | Panda | Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) | BGI-Shenzhen AilMel 1.0 Dec. 2009 | 2010-02-03 | 2013-06-21 | 2010-02-04 | 50.022% |
| 42 | odoRosDiv1 | Odobenus rosmarus divergens | Pacific walrus | 16-Jan-2013 (GCA_000321225.1) | Marine mammals/Oros_1.0 | 2013-07-12 | 2013-07-12 | 2013-07-13 | 53.559% |
| 43 | lepWed1 | Leptonychotes weddellii | Weddell seal | 29-Mar-2013 (GCA_000349705.1) | Broad Institute/LepWed1.0 | 2013-07-11 | 2013-07-11 | 2013-07-12 | 52.424% |
| 44 | pteAle1 | Pteropus alecto | Black Flying-fox | 06-Aug-2012 (GCA_000325575.1) | BGI/ASM32557v1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 45 | pteVam1 | Pteropus vampyrus | Megabat | Jul. 2008 (Broad/pteVam1) | Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) | 2009-09-02 | 2012-05-02 | 2009-09-02 | 45.414% |
| 46 | myoDav1 | Myotis Davidii | David's Myotis (bat) | 17-Aug-2012 (GCA_000327345.1) | BGI/ASM32734v1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 47 | myoLuc2 | Myotis lucifugus | Microbat | Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) | Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) | 2010-11-03 | 2013-06-21 | N/A | N/A |
| 48 | eptFus1 | Eptesicus fuscus | big brown bat | 25-Jul-2012 (GCA_000308155.1) | Broad Institute/EptFus1.0 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 49 | eriEur2 | Erinaceus europaeus | Hedgehog | May 2012 (EriEur2.0/eriEur2) | Broad Institute EriEur2.0 | 2013-06-12 | 2013-06-07 | 2013-07-09 | 26.149% |
| 50 | sorAra2 | Sorex araneus | Shrew | Aug. 2008 (Broad/sorAra2) | Broad Institute SorAra2.0 | 2013-05-29 | 2013-05-29 | 2013-06-18 | 27.681% |
| 51 | conCri1 | Condylura cristata | Star-nosed mole | 14-Mar-2012 (GCA_000260355.1) | Broad Institute/ConCri1.0 | 2013-07-09 | 2013-07-09 | 2013-07-10 | 37.034% |
| 52 | loxAfr3 | Loxodonta africana | Elephant | Jul. 2009 (Broad/loxAfr3) | Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) | 2009-09-02 | 2013-06-21 | 2009-09-02 | 46.636% |
| 53 | eleEdw1 | Elephantulus edwardii | Cape elephant shrew | 01-Aug-2012 (GCA_000299155.1) | Broad Institute/EleEdw1.0 | 2013-07-07 | 2013-07-07 | 2013-07-09 | 27.675% |
| 54 | chrAsi1 | Chrysochloris asiatica | Cape golden mole | 01-Aug-2012 (GCA_000296735.1) | Broad Institute/ChrAsi1.0 | 2013-07-07 | 2013-07-07 | 2013-07-09 | 34.209% |
| 55 | oryAfe1 | Orycteropus afer | Aardvark | 24-May-2012 (GCA_000298275.1) | Broad Institute/OryAfe1.0 | 2013-07-07 | 2013-07-07 | 2013-07-09 | 41.668% |
| 56 | echTel2 | Echinops telfairi | Tenrec | Nov. 2012 (Broad/echTel2) | Broad/EchTel2.0 | 2013-05-30 | 2013-05-30 | 2013-06-17 | 30.135% |
| 57 | triMan1 | Trichechus manatus latirostris | Manatee | Oct. 2011 (Broad v1.0/triMan1) | Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) | 2012-03-28 | 2012-03-29 | 2013-07-11 | 46.580% |
| 58 | dasNov3 | Dasypus novemcinctus | Armadillo | Dec. 2011 (Baylor/dasNov3) | Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) | 2012-04-12 | 2012-04-13 | 2013-07-09 | 46.571% |
| 59 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2009-09-02 | 14.358% |
| 60 | sarHar1 | Sarcophilus harrisii | Tasmanian devil | Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) | Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) | 2012-02-02 | 2012-02-08 | 2013-07-10 | 7.414% |
| 61 | macEug2 | Macropus eugenii | Wallaby | Sep. 2009 (TWGS Meug_1.1/macEug2) | TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) | 2010-11-05 | 2011-12-02 | 2013-07-11 | 6.534% |
| 62 | ornAna1 | Ornithorhynchus anatinus | Platypus | Mar. 2007 (WUGSC 5.0.1/ornAna1) | WUSTL version 5.0.1 | 2009-08-15 | 2013-06-22 | 2009-09-02 | 7.627% |
| 63 | falChe1 | Falco cherrug | Saker falcon | 05-Feb-2013 (GCA_000337975.1) | BGI/F_cherrug_v1.0 | 2013-06-27 | 2013-06-27 | 2013-06-27 | 3.812% |
| 64 | falPer1 | Falco peregrinus | peregrine falcon | 05-Feb-2013 (GCA_000337955.1) | BGI/F_peregrinus_v1.0 | 2013-06-28 | 2013-06-28 | 2013-06-27 | 3.879% |
| 65 | ficAlb2 | Ficedula albicollis | Collared Flycatcher | 27-Jun-2013 (GCA_000247815.2) | Uppsala University/FicAlb1.5 | 2013-06-29 | 2013-06-29 | 2013-06-29 | 3.715% |
| 66 | zonAlb1 | Zonotrichia albicollis | White-throated sparrow | 30-Apr-2013 (GCA_000385455.1) | White-throated sparrow consortium/ASM38545v1 | 2013-06-26 | 2013-06-26 | 2013-06-26 | 3.476% |
| 67 | geoFor1 | Geospiza fortis | Medium ground finch | Apr. 2012 (GeoFor_1.0/geoFor1) | Beijing Genomics Institute | 2012-07-26 | 2012-07-26 | 2012-07-29 | 3.503% |
| 68 | taeGut2 | Taeniopygia guttata | Zebra finch | Feb. 2013 (WashU taeGut324/taeGut2) | Washington University School of Medicine | 2013-06-05 | 2013-06-05 | 2013-06-17 | 5.321% |
| 69 | pseHum1 | Pseudopodoces humilis | Tibetan ground jay | 11-Jan-2013 (GCA_000331425.1) | Beijing Genomics Institute (BGI)-Shenzhen/PseHum1.0 | 2013-06-27 | 2013-06-27 | 2013-06-29 | 3.982% |
| 70 | melUnd1 | Melopsittacus undulatus | Budgerigar | Sep. 2011 (WUSTL v6.3/melUnd1) | WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) | 2012-03-27 | 2012-03-28 | 2013-06-27 | 3.577% |
| 71 | amaVit1 | Amazona vittata | Parrot | Jan. 2013 (AV1/amaVit1) | Puerto Rican Parrot Genome Project AV1 | 2013-03-27 | 2013-03-27 | 2013-06-28 | 3.298% |
| 72 | araMac1 | Ara macao | Scarlet Macaw | 26-Jun-2013 (GCA_000400695.1) | Texas A&M University/SMACv1.1 | 2013-06-28 | 2013-06-28 | 2013-06-29 | 2.912% |
| 73 | colLiv1 | Columba livia | Rock pigeon | 11-Feb-2013 (GCA_000337935.1) | BGI/Cliv_1.0 | 2013-06-27 | 2013-06-27 | 2013-06-29 | 3.683% |
| 74 | anaPla1 | Anas platyrhynchos | Mallard duck | 26-Apr-2013 (GCA_000355885.1) | State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing/BGI_duck_1.0 | 2013-06-27 | 2013-06-27 | 2013-06-27 | 3.509% |
| 75 | galGal4 | Gallus gallus | Chicken | Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) | ICGSC Gallus_gallus-4.0 (GCA_000002315.2) | 2012-01-04 | 2012-01-04 | 2013-06-29 | 3.684% |
| 76 | melGal1 | Meleagris gallopavo | Turkey | Dec. 2009 (TGC Turkey_2.01/melGal1) | TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) | 2010-11-04 | 2013-06-21 | 2011-03-28 | 2.645% |
| 77 | allMis1 | Alligator mississippiensis | American alligator | Aug. 2012 (allMis0.2/allMis1) | International Crocodilian Genomes Working Group | 2013-06-07 | 2012-08-28 | 2013-06-28 | 7.084% |
| 78 | cheMyd1 | Chelonia mydas | green seaturtle | 18-Mar-2013 (GCA_000344595.1) | BGI/CheMyd_1.0 | 2013-08-26 | 2013-08-26 | 2013-08-28 | 3.696% |
| 79 | chrPic1 | Chrysemys picta bellii | Painted turtle | Dec. 2011 (v3.0.1/chrPic1) | International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) | 2012-03-27 | 2012-03-29 | N/A | N/A |
| 80 | pelSin1 | Pelodiscus sinensis | Soft-shell Turtle | 01-Oct-2011 (GCA_000230535.1) | Soft-shell Turtle Genome Consortium/PelSin_1.0 | 2013-07-01 | 2013-07-01 | N/A | N/A |
| 81 | apaSpi1 | Apalone spinifera | spiny softshell turtle | 03-May-2013 (GCA_000385615.1) | WUGSC/ASM38561v1 | 2013-08-26 | 2013-08-26 | 2013-08-28 | 2.952% |
| 82 | anoCar2 | Anolis carolinensis | Lizard | May 2010 (Broad AnoCar2.0/anoCar2) | Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) | 2011-04-12 | 2011-04-13 | 2011-04-19 | 3.552% |
| 83 | xenTro7 | Xenopus tropicalis | X. tropicalis | Sep. 2012 (JGI 7.0/xenTro7) | US DOE Joint Genome Institute (JGI-PGF) | 2013-06-21 | 2013-06-14 | N/A | N/A |
| 84 | latCha1 | Latimeria chalumnae | Coelacanth | Aug. 2011 (Broad/latCha1) | Broad LatCha1 (GCA_000225785.1) | 2012-01-11 | 2012-01-12 | 2013-07-16 | 2.749% |
| 85 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | 2009-09-02 | 1.712% |
| 86 | fr3 | Takifugu rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | 2013-08-20 | 1.703% |
| 87 | takFla1 | Takifugu flavidus | Tawny puffer fish | 30-May-2013 (GCA_000400755.1) | IOCAS/version 1 of Takifugu flavidus genome | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 88 | oreNil2 | Oreochromis niloticus | Nile tilapia | Jan. 2011 (Broad oreNil1.1/oreNil2) | Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) | 2012-04-10 | 2012-04-11 | N/A | N/A |
| 89 | neoBri1 | Neolamprologus brichardi | Princess of Burundi | 31-May-2011 (GCA_000239395.1) | Broad Institute of MIT and Harvard/NeoBri1.0 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 90 | hapBur1 | Haplochromis burtoni | Burton's mouthbreeder | 12-Oct-2011 (GCA_000239415.1) | Broad Institute of MIT and Harvard/AstBur1.0 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 91 | mayZeb1 | Maylandia zebra | a cichlid fish | 08-Mar-2012 (GCA_000238955.2) | Broad Institute/MetZeb1.1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 92 | punNye1 | Pundamilia nyererei | a cichlid fish | 12-Oct-2011 (GCA_000239375.1) | Broad Institute of MIT and Harvard/PunNye1.0 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 93 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2009-09-02 | 1.849% |
| 94 | xipMac1 | Xiphophorus maculatus | southern platyfish | 02-Jan-2012 (GCA_000241075.1) | Washington University School of Medicine/Xiphophorus_maculatus-4.4.2 | 2013-07-01 | 2013-07-01 | 2013-08-28 | 1.842% |
| 95 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | 2009-09-02 | 1.916% |
| 96 | gadMor1 | Gadus morhua | Atlantic cod | May 2010 (Genofisk GadMor_May2010/gadMor1) | Genofisk GadMor_May2010 (GCA_000231765.1) | 2011-12-29 | 2012-01-04 | N/A | N/A |
| 97 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) | 2010-12-03 | 2013-06-21 | 2010-12-18 | 2.790% |
| 98 | astMex1 | Astyanax mexicanus | Mexican tetra (cavefish) | 23-Apr-2013 (GCA_000372685.1) | Aquatic Genome Models/Astyanax_mexicanus-1.0.2 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 99 | lepOcu1 | Lepisosteus oculatus | Spotted Gar | 02-Dec-2011 (GCA_000242695.1) | Broad Institute of MIT and Harvard/LepOcu1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 100 | petMar2 | Petromyzon marinus | Lamprey | Sep. 2010 (WUGSC 7.0/petMar2) | GSC Washington University School of Medicine | 2012-10-12 | 2012-10-12 | 2012-10-17 | 1.046% |
