Gbib auto updates: Difference between revisions
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(Created page with "By default the Gbib checks every 5 seconds if a flag file on the hgDownload server is more recent than the date of the last update of the Gbib. If the file on hgDownload is newe...") |
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By default the Gbib checks every 5 seconds if a flag file on the hgDownload server is more recent than the date of the last update of the Gbib. | By default the Gbib checks every 5 seconds if a flag file on the hgDownload server is more recent than the date of the last update of the Gbib. | ||
If the file on hgDownload is newer, it will update | If the file on hgDownload is newer, it will start the update: | ||
# Update the update script itself from hgwdev.soe.ucsc.edu/browserbox and also update the hg.conf from there | |||
# Update all existing /gbdb files | # Update all existing /gbdb files | ||
# Update all mysql files + patch the hg19 searchspec and hide some tracks on hg19 | # Update all mysql files + patch the hg19 searchspec and hide some tracks on hg19 | ||
# Update all hgcentral files + patch the blat server table | # Update all hgcentral files + patch the blat server table | ||
Will have to move updateBrowser.sh and hg.conf to hgdownload for release. | |||
Revision as of 15:59, 11 April 2014
By default the Gbib checks every 5 seconds if a flag file on the hgDownload server is more recent than the date of the last update of the Gbib.
If the file on hgDownload is newer, it will start the update:
- Update the update script itself from hgwdev.soe.ucsc.edu/browserbox and also update the hg.conf from there
- Update all existing /gbdb files
- Update all mysql files + patch the hg19 searchspec and hide some tracks on hg19
- Update all hgcentral files + patch the blat server table
Will have to move updateBrowser.sh and hg.conf to hgdownload for release.
