Hg38 100-way conservation alignment: Difference between revisions

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==See Also==
==see also==


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</UL>
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==do not edit==


<TABLE BORDER=0>
This table is automatically generated off-line from the UCSC databases.  Please do not edit it.
<TR><TD>The default<BR>scoring matrix is:</TD><TD WIDTH=42>&nbsp;</TD>
<TD>The HoxD55<BR>scoring matrix is:</TD><TD WIDTH=42>&nbsp;</TD><TD>The human-chimp.v2<BR>scoring matrix is:</TD></TR>


<TR><TD>
<TABLE BORDER=1>
<TABLE BORDER=1>
<TR><TH>&nbsp;</TH><TH>A</TH><TH>C</TH><TH>G</TH><TH>T</TH></TR>
<TR>
<TR><TH>A</TH><TD>91</TD><TD>-114</TD><TD>-31</TD><TD>-123</TD></TR>
  <TH>URL&nbsp;to<BR>assembly<BR>sequence</TH>
<TR><TH>C</TH><TD>-114</TD><TD>100</TD><TD>-125</TD><TD>-31</TD></TR>
  <TH>UCSC&nbsp;db&nbsp;name/<BR>genome-preview<BR>browser</TH>
<TR><TH>G</TH><TD>-31</TD><TD>-125</TD><TD>100</TD><TD>-114</TD></TR>
  <TD>Scientific&nbsp;name/<BR>assembly&nbsp;information</TD>
<TR><TH>T</TH><TD>-123</TD><TD>-31</TD><TD>-114</TD><TD>91</TD></TR>
  <TD>Common<BR>name</TD>
</TABLE>
  <TD>assembly&nbsp;date&nbsp;(version)</TD>
O=400 E=30
  <TD>source<BR>version</TD>
</TD><TD WIDTH=42>&nbsp;</TD><TD><TABLE BORDER=1>
  <TD>Repeat<BR>Masker</TD>
<TR><TH>&nbsp;</TH><TH>A</TH><TH>C</TH><TH>G</TH><TH>T</TH></TR>
  <TD>Window<BR>Masker</TD>
<TR><TH>A</TH><TD>91</TD><TD>-90</TD><TD>-25</TD><TD>-100</TD></TR>
  <TD>chain<BR>on&nbsp;hg38</TD>
<TR><TH>C</TH><TD>-90</TD><TD>100</TD><TD>-100</TD><TD>-25</TD></TR>
   <TD>%&nbsp;of&nbsp;hg38<BR>matched<BR>(chainLink&nbsp;table)</TD>
<TR><TH>G</TH><TD>-25</TD><TD>-100</TD><TD>100</TD><TD>-90</TD></TR>
<TR><TH>T</TH><TD>-100</TD><TD>-25</TD><TD>-90</TD><TD>91</TD></TR>
</TABLE>
O=400 E=30
</TD><TD WIDTH=42>&nbsp;</TD><TD><TABLE BORDER=1>
<TR><TH>&nbsp;</TH><TH>A</TH><TH>C</TH><TH>G</TH><TH>T</TH></TR>
<TR><TH>A</TH><TD>90</TD><TD>-330</TD><TD>-236</TD><TD>-356</TD></TR>
<TR><TH>C</TH><TD>-330</TD><TD>100</TD><TD>-318</TD><TD>-236</TD></TR>
<TR><TH>G</TH><TD>-236</TD><TD>-318</TD><TD>100</TD><TD>-330</TD></TR>
<TR><TH>T</TH><TD>-356</TD><TD>-236</TD><TD>-330</TD><TD>90</TD></TR>
</TABLE>
O=600 E=150
</TD>
</TR></TABLE>
 
==do not edit, automatically generated table==
<TABLE BORDER=1>
<TR><TH>query</TH>
  <TH>abridged<BR>repeats(no)</TH>
  <TH>M(0)</TH><TH>K(3000)</TH>
  <TH>L(3000)</TH><TH>Q</TH><TH>Y(9400)</TH>
  <TH>program<BR>run</TH><TH>E(30)</TH><TH>H(0)</TH>
  <TH>O(400)</TH><TH>T(1)</TH>
  <TH>chain&nbsp;table<BR>date</TH>
   <TH>%&nbsp;of&nbsp;hg38<BR>matched<BR>(chainLink&nbsp;table)</TH>
  <TH>%&nbsp;of&nbsp;query<BR>matched<BR>(chainLinkHg38)</TH>
</TR>
</TR>
<TR>
<TR>
   <TH>Chimp&nbsp;panTro4</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/ 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD>
   <TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD>
  <TD>Dec.&nbsp;2013&nbsp;(GRCh38/hg38)</TD>
   <TD>15000</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD>
   <TD>GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2)</TD>
  <TD ALIGN=RIGHT>2014-01-10</TD>
  <TD ALIGN=RIGHT>2013-12-25</TD>
  <TD>2015-01-14</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD>
  <TD>Feb.&nbsp;2011&nbsp;(CSAC&nbsp;2.1.4/panTro4)</TD>
  <TD>CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)</TD>
  <TD ALIGN=RIGHT>2012-01-09</TD>
  <TD ALIGN=RIGHT>2012-01-09</TD>
   <TD>2014-05-27</TD><TD ALIGN=RIGHT>93.112%</TD>
   <TD>2014-05-27</TD><TD ALIGN=RIGHT>93.112%</TD>
  <TD ALIGN=RIGHT>95.664%</TD></TR>
</TR><TR>
<TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla<BR>gorilla<BR>gorilla]</TD><TD>Gorilla</TD>
   <TH>Gorilla&nbsp;gorGor3</TH>
  <TD>May&nbsp;2011&nbsp;(gorGor3.1/gorGor3)</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.gorGor3.tuning.Q.txt</TD>
  <TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2011-11-16</TD>
  <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2014-12-15</TD><TD ALIGN=RIGHT>88.005%</TD>
   <TD>2014-12-15</TD><TD ALIGN=RIGHT>88.005%</TD>
  <TD ALIGN=RIGHT>91.695%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
   <TH>Orangutan&nbsp;ponAbe2</TH>
  <TD>July&nbsp;2007&nbsp;(WUGSC&nbsp;2.0.2/ponAbe2)</TD>
  <TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD>
   <TD>WUSTL 3.0</TD>
   <TD>15000</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2014-09-02</TD><TD ALIGN=RIGHT>89.187%</TD>
   <TD>2014-09-02</TD><TD ALIGN=RIGHT>89.187%</TD>
  <TD ALIGN=RIGHT>89.656%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000146795.3/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu_3.0/ Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
   <TH>Gibbon&nbsp;nomLeu3</TH>
  <TD>Oct.&nbsp;2012&nbsp;(GGSC&nbsp;Nleu3.0/nomLeu3)</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.nomLeu3.tuning.Q.txt</TD>
  <TD>Gibbon Genome Sequencing Consortium </TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2013-03-04</TD>
  <TD ALIGN=RIGHT>2013-03-01</TD>
   <TD>2014-12-12</TD><TD ALIGN=RIGHT>86.379%</TD>
   <TD>2014-12-12</TD><TD ALIGN=RIGHT>86.379%</TD>
  <TD ALIGN=RIGHT>90.470%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Macaca<BR>fascicularis]</TD><TD>Crab-eating&nbsp;macaque</TD>
   <TH>Crab-eating macaque&nbsp;macFas5</TH>
  <TD>Jun&nbsp;2013&nbsp;(Macaca_fascicularis_5.0/macFas5)</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.macFas5.tuning.Q.txt</TD>
  <TD>Washington University (WashU) GCA_000364345.1</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2013-06-30</TD>
  <TD ALIGN=RIGHT>2013-06-30</TD>
   <TD>2014-12-14</TD><TD ALIGN=RIGHT>85.675%</TD>
   <TD>2014-12-14</TD><TD ALIGN=RIGHT>85.675%</TD>
  <TD ALIGN=RIGHT>87.749%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Rhesus</TD>
   <TH>Rhesus&nbsp;rheMac3</TH>
  <TD>Oct.&nbsp;2010&nbsp;(BGI&nbsp;CR_1.0/rheMac3)</TD>
  <TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD>
   <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD>
   <TD>15000</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2011-12-30</TD>
  <TD ALIGN=RIGHT>2012-01-03</TD>
   <TD>2014-01-28</TD><TD ALIGN=RIGHT>79.729%</TD>
   <TD>2014-01-28</TD><TD ALIGN=RIGHT>79.729%</TD>
  <TD ALIGN=RIGHT>86.715%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/54005 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Papio<BR>anubis]</TD><TD>Baboon</TD>
   <TH>Baboon&nbsp;papAnu2</TH>
  <TD>Mar.&nbsp;2012&nbsp;(Baylor&nbsp;Panu_2.0/papAnu2)</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.papAnu2.tuning.Q.txt</TD>
  <TD>Baylor College of Medicine</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2012-07-22</TD>
  <TD ALIGN=RIGHT>2012-08-07</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>84.179%</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>84.179%</TD>
  <TD ALIGN=RIGHT>84.502%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
   <TH>Squirrel monkey&nbsp;saiBol1</TH>
  <TD>Oct.&nbsp;2011&nbsp;(Broad/saiBol1)</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.saiBol1.tuning.Q.txt</TD>
  <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2012-01-07</TD>
  <TD ALIGN=RIGHT>2012-01-09</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>70.565%</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>70.565%</TD>
  <TD ALIGN=RIGHT>81.466%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AQIB01 Chlorocebus<BR>sabaeus]</TD><TD>Green&nbsp;monkey</TD>
   <TH>Green monkey&nbsp;chlSab2</TH>
   <TD>25&nbsp;Mar-2014&nbsp;(Chlorocebus_sabeus&nbsp;1.1/chlSab2)</TD>
  <TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD>
  <TD>Vervet Genomics Consortium GCA_000409795.2</TD>
   <TD>15000</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2014-04-10</TD>
  <TD ALIGN=RIGHT>2014-04-10</TD>
   <TD>2014-07-11</TD><TD ALIGN=RIGHT>84.393%</TD>
   <TD>2014-07-11</TD><TD ALIGN=RIGHT>84.393%</TD>
  <TD ALIGN=RIGHT>88.264%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
   <TH>Marmoset&nbsp;calJac3</TH>
  <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.calJac3.tuning.Q.txt</TD>
  <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD ALIGN=RIGHT>2010-02-05</TD>
  <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>71.709%</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>71.709%</TD>
  <TD ALIGN=RIGHT>76.757%</TD></TR>
<TR>
  <TH>Aardvark&nbsp;oryAfe1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Bushbaby&nbsp;otoGar3</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298275.1/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orycteropus_afer/OryAfe1.0/ Orycteropus<BR>afer<BR>afer]</TD><TD>Aardvark</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.otoGar3.tuning.Q.txt</TD>
  <TD>May&nbsp;2012&nbsp;(OryAfe1.0/oryAfe1)</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
   <TD>Broad Institute GCA_000298275.1</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD>
  <TD>Mar.&nbsp;2011&nbsp;(Broad/otoGar3)</TD>
  <TD>Broad Institute (GCA_000181295.3)</TD>
  <TD ALIGN=RIGHT>2012-03-13</TD>
  <TD ALIGN=RIGHT>2012-03-14</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>49.485%</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>49.485%</TD>
  <TD ALIGN=RIGHT>60.561%</TD></TR>
<TR>
  <TH>White rhinoceros&nbsp;cerSim1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Cape golden mole&nbsp;chrAsi1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000283155.1/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ceratotherium_simum/CerSimSim1.0/ Ceratotherium<BR>simum]</TD><TD>White&nbsp;rhinoceros</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2012&nbsp;(CerSimSim1.0/cerSim1)</TD>
  <TD>Broad Institute</TD>
  <TD ALIGN=RIGHT>2012-08-28</TD>
  <TD ALIGN=RIGHT>2012-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chrysochloris_asiatica/ChrAsi1.0/ Chrysochloris<BR>asiatica]</TD><TD>Cape&nbsp;golden&nbsp;mole</TD>
  <TD>Aug&nbsp;2012&nbsp;(ChrAsi1.0/chrAsi1)</TD>
  <TD>Broad Institute GCA_000296735.1</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Big brown bat&nbsp;eptFus1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Eptesicus_fuscus/EptFus1.0/ Eptesicus<BR>fuscus]</TD><TD>Big&nbsp;brown&nbsp;bat</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jul&nbsp;2012&nbsp;(EptFus1.0/eptFus1)</TD>
  <TD>Broad Institute GCA_000308155.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Chinese tree shrew&nbsp;tupChi1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000334495.1/ 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Tupaia_chinensis/TupChi_1.0/ Tupaia<BR>chinensis]</TD><TD>Chinese&nbsp;tree&nbsp;shrew</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jan&nbsp;2013&nbsp;(TupChi_1.0/tupChi1)</TD>
  <TD>BGI GCA_000334495.1</TD>
  <TD ALIGN=RIGHT>2013-07-05</TD>
   <TD ALIGN=RIGHT>2013-07-05</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Horse&nbsp;equCab2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Sep.&nbsp;2007&nbsp;(Broad/equCab2)</TD>
  <TD>Broad Institute EquCab2</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
  <TD ALIGN=RIGHT>2013-06-21</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Bactrian camel&nbsp;camFer1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=camFer1 camFer1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Camelus_ferus/CB1/ Camelus<BR>ferus]</TD><TD>Bactrian&nbsp;camel</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Dec&nbsp;2011&nbsp;(CB1/camFer1)</TD>
  <TD>The Bactrian Camels Genome Sequencing and Analysis Consortium GCA_000311805.1</TD>
  <TD ALIGN=RIGHT>2013-07-12</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Alpaca&nbsp;vicPac2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Vicugna<BR>pacos]</TD><TD>Alpaca</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Mar.&nbsp;2013&nbsp;(Vicugna_pacos-2.0.1/vicPac2)</TD>
  <TD>Broad Institute</TD>
  <TD ALIGN=RIGHT>2013-06-10</TD>
   <TD ALIGN=RIGHT>2013-06-10</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Dolphin&nbsp;turTru2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Oct.&nbsp;2011&nbsp;(Baylor&nbsp;Ttru_1.4/turTru2)</TD>
  <TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD>
  <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Dog&nbsp;canFam3</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/85 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
  <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>Sep.&nbsp;2011&nbsp;(Broad&nbsp;CanFam3.1/canFam3)</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>Broad CanFam3.1 (GCA_000002285.2)</TD>
  <TD ALIGN=RIGHT>2012-01-05</TD>
  <TD ALIGN=RIGHT>2012-01-06</TD>
   <TD>2014-01-27</TD><TD ALIGN=RIGHT>49.978%</TD>
   <TD>2014-01-27</TD><TD ALIGN=RIGHT>49.978%</TD>
  <TD ALIGN=RIGHT>60.083%</TD></TR>
<TR>
  <TH>Killer whale&nbsp;orcOrc1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Squirrel&nbsp;speTri2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Orcinus<BR>orca]</TD><TD>Killer&nbsp;whale</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jan&nbsp;2013&nbsp;(Oorc_1.1/orcOrc1)</TD>
  <TD>Marine mammals GCA_000331955.1</TD>
  <TD ALIGN=RIGHT>2013-08-20</TD>
  <TD ALIGN=RIGHT>2013-08-20</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD>
  <TD>Nov.&nbsp;2011&nbsp;(Broad/speTri2)</TD>
  <TD>Broad Institute (GCA_000236235.1)</TD>
   <TD ALIGN=RIGHT>2012-03-14</TD>
  <TD ALIGN=RIGHT>2012-03-15</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Black flying-fox&nbsp;pteAle1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pteropus_alecto/ASM32557v1/ Pteropus<BR>alecto]</TD><TD>Black&nbsp;flying-fox</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Aug&nbsp;2012&nbsp;(ASM32557v1/pteAle1)</TD>
  <TD>BGI GCA_000325575.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Pig&nbsp;susScr3</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13421 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Sus<BR>scrofa]</TD><TD>Pig</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Aug.&nbsp;2011&nbsp;(SGSC&nbsp;Sscrofa10.2/susScr3)</TD>
  <TD>SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)</TD>
  <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Elephant&nbsp;loxAfr3</TH>
   <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jul.&nbsp;2009&nbsp;(Broad/loxAfr3)</TD>
  <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Naked mole-rat&nbsp;hetGla2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/72441 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole-rat</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jan.&nbsp;2012&nbsp;(Broad&nbsp;HetGla_female_1.0/hetGla2)</TD>
  <TD>Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)</TD>
  <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Megabat&nbsp;pteVam1</TH>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 29]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jul.&nbsp;2008&nbsp;(Broad/pteVam1)</TD>
  <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-05-02</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Cat&nbsp;felCat8</TH>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ Felis<BR>catus]</TD><TD>Cat</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Nov.&nbsp;2014&nbsp;(ICGSC&nbsp;Felis_catus_8.0/felCat8)</TD>
  <TD>International Cat Genome Sequencing Consortium</TD>
  <TD ALIGN=RIGHT>2014-11-22</TD>
   <TD ALIGN=RIGHT>2014-11-22</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Panda&nbsp;ailMel1</TH>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Dec.&nbsp;2009&nbsp;(BGI-Shenzhen&nbsp;1.0/ailMel1)</TD>
  <TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD>
  <TD ALIGN=RIGHT>2010-02-03</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Ferret &nbsp;musFur1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1 32]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mustela_putorius/MusPutFur1.0/ Mustela<BR>putorius<BR>furo]</TD><TD>Ferret&nbsp;</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Apr.&nbsp;2011&nbsp;(MusPutFur1.0/musFur1)</TD>
  <TD>Ferret Genome Sequencing Consortium</TD>
  <TD ALIGN=RIGHT>2013-03-05</TD>
   <TD ALIGN=RIGHT>2013-03-05</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Guinea pig&nbsp;cavPor3</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Feb.&nbsp;2008&nbsp;(Broad/cavPor3)</TD>
  <TD>Broad Institute cavPor3</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Armadillo&nbsp;dasNov3</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12594 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Dec.&nbsp;2011&nbsp;(Baylor/dasNov3)</TD>
  <TD>Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)</TD>
  <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Rabbit&nbsp;oryCun2</TH>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 35]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Apr.&nbsp;2009&nbsp;(Broad/oryCun2)</TD>
  <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Tibetan antelope&nbsp;panHod1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400835.1/ 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pantholops_hodgsonii/PHO1.0/ Pantholops<BR>hodgsonii]</TD><TD>Tibetan&nbsp;antelope</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2013&nbsp;(PHO1.0/panHod1)</TD>
  <TD>BGI GCA_000400835.1</TD>
  <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Weddell seal&nbsp;lepWed1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Leptonychotes_weddellii/LepWed1.0/ Leptonychotes<BR>weddellii]</TD><TD>Weddell&nbsp;seal</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Mar&nbsp;2013&nbsp;(LepWed1.0/lepWed1)</TD>
  <TD>Broad Institute GCA_000349705.1</TD>
  <TD ALIGN=RIGHT>2013-07-11</TD>
   <TD ALIGN=RIGHT>2013-07-11</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Pacific walrus&nbsp;odoRosDiv1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Odobenus_rosmarus/Oros_1.0/ Odobenus<BR>rosmarus<BR>divergens]</TD><TD>Pacific&nbsp;walrus</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jan&nbsp;2013&nbsp;(Oros_1.0/odoRosDiv1)</TD>
  <TD>Marine mammals GCA_000321225.1</TD>
  <TD ALIGN=RIGHT>2013-07-12</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>David's myotis (bat)&nbsp;myoDav1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Myotis_davidii/ASM32734v1/ Myotis<BR>davidii]</TD><TD>David's&nbsp;myotis&nbsp;(bat)</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Aug&nbsp;2012&nbsp;(ASM32734v1/myoDav1)</TD>
  <TD>BGI GCA_000327345.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Cow&nbsp;bosTau8</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/189361 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau8 bosTau8]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=DAAA02 Bos<BR>taurus]</TD><TD>Cow</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>Jun.&nbsp;2014&nbsp;(Bos_taurus_UMD_3.1.1/bosTau8)</TD>
   <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>University of Maryland Bos_taurus_UMD_3.1.1</TD>
  <TD ALIGN=RIGHT>2014-09-11</TD>
  <TD ALIGN=RIGHT>2014-09-12</TD>
   <TD>2014-10-16</TD><TD ALIGN=RIGHT>45.975%</TD>
   <TD>2014-10-16</TD><TD ALIGN=RIGHT>45.975%</TD>
  <TD ALIGN=RIGHT>50.440%</TD></TR>
<TR>
  <TH>Domestic goat&nbsp;capHir1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Sheep&nbsp;oviAri3</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317765.1/ 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Capra_hircus/CHIR_1.0/ Capra<BR>hircus]</TD><TD>Domestic&nbsp;goat</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.oviAri3.tuning.Q.txt</TD>
  <TD>May&nbsp;2012&nbsp;(CHIR_1.0/capHir1)</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>International Goat Genome Consortium GCA_000317765.1</TD>
  <TD ALIGN=RIGHT>2013-07-15</TD>
  <TD ALIGN=RIGHT>2013-07-15</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298735.1/ 42]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ovis_aries/Oar_v3.1/ Ovis<BR>aries]</TD><TD>Sheep</TD>
  <TD>Aug.&nbsp;2012&nbsp;(ISGC&nbsp;Oar_v3.1/oviAri3)</TD>
  <TD>International Sheep Genome Consortium</TD>
  <TD ALIGN=RIGHT>2013-06-10</TD>
  <TD ALIGN=RIGHT>2013-06-09</TD>
   <TD>2015-01-21</TD><TD ALIGN=RIGHT>41.193%</TD>
   <TD>2015-01-21</TD><TD ALIGN=RIGHT>41.193%</TD>
  <TD ALIGN=RIGHT>47.075%</TD></TR>
<TR>
  <TH>Microbat&nbsp;myoLuc2</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Cape elephant shrew&nbsp;eleEdw1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/614 43]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jul.&nbsp;2010&nbsp;(Broad&nbsp;Institute&nbsp;Myoluc2.0/myoLuc2)</TD>
  <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD>
  <TD ALIGN=RIGHT>2010-11-03</TD>
  <TD ALIGN=RIGHT>2013-06-21</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ 44]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Elephantulus_edwardii/EleEdw1.0/ Elephantulus<BR>edwardii]</TD><TD>Cape&nbsp;elephant&nbsp;shrew</TD>
  <TD>Aug&nbsp;2012&nbsp;(EleEdw1.0/eleEdw1)</TD>
  <TD>Broad Institute GCA_000299155.1</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Manatee&nbsp;triMan1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Oct.&nbsp;2011&nbsp;(Broad&nbsp;v1.0/triMan1)</TD>
  <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD>
  <TD ALIGN=RIGHT>2012-03-28</TD>
   <TD ALIGN=RIGHT>2012-03-29</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Lesser Egyptian jerboa&nbsp;jacJac1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000280705.1/ 46]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Jaculus_jaculus/JacJac1.0/ Jaculus<BR>jaculus]</TD><TD>Lesser&nbsp;Egyptian&nbsp;jerboa</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2012&nbsp;(JacJac1.0/jacJac1)</TD>
  <TD>Broad Institute GCA_000280705.1</TD>
  <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Chinchilla&nbsp;chiLan1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chinchilla_lanigera/ChiLan1.0/ Chinchilla<BR>lanigera]</TD><TD>Chinchilla</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2012&nbsp;&nbsp;(ChiLan1.0/chiLan1)</TD>
  <TD>Broad Institute</TD>
  <TD ALIGN=RIGHT>2012-07-28</TD>
   <TD ALIGN=RIGHT>2012-07-27</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Star-nosed mole&nbsp;conCri1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260355.1/ 48]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Condylura_cristata/ConCri1.0/ Condylura<BR>cristata]</TD><TD>Star-nosed&nbsp;mole</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Mar&nbsp;2012&nbsp;(ConCri1.0/conCri1)</TD>
  <TD>Broad Institute GCA_000260355.1</TD>
  <TD ALIGN=RIGHT>2013-07-09</TD>
   <TD ALIGN=RIGHT>2013-07-09</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Brush-tailed rat&nbsp;octDeg1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260255.1/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Octodon_degus/OctDeg1.0/ Octodon<BR>degus]</TD><TD>Brush-tailed&nbsp;rat</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Apr&nbsp;2012&nbsp;(OctDeg1.0/octDeg1)</TD>
  <TD>Broad Institute GCA_000260255.1</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Pika&nbsp;ochPri3</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000292845.1/ 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ochotona_princeps/OchPri3.0/ Ochotona<BR>princeps]</TD><TD>Pika</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2012&nbsp;(OchPri3.0/ochPri3)</TD>
  <TD>Broad Institute</TD>
  <TD ALIGN=RIGHT>2013-06-20</TD>
   <TD ALIGN=RIGHT>2013-06-18</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Hedgehog&nbsp;eriEur2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296755.1/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Erinaceus_europaeus/EriEur2.0/ Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2012&nbsp;(EriEur2.0/eriEur2)</TD>
  <TD>Broad Institute EriEur2.0</TD>
  <TD ALIGN=RIGHT>2013-06-12</TD>
   <TD ALIGN=RIGHT>2013-06-07</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Tenrec&nbsp;echTel2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Echinops_telfairi/EchTel2.0/ Echinops<BR>telfairi]</TD><TD>Tenrec</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Nov.&nbsp;2012&nbsp;(Broad/echTel2)</TD>
  <TD>Broad/EchTel2.0</TD>
  <TD ALIGN=RIGHT>2013-05-30</TD>
   <TD ALIGN=RIGHT>2013-05-30</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Mouse&nbsp;mm10</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 53]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD>
  <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>Dec.&nbsp;2011&nbsp;(GRCm38/mm10)</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD>
  <TD ALIGN=RIGHT>2012-02-06</TD>
  <TD ALIGN=RIGHT>2012-02-07</TD>
   <TD>2014-01-25</TD><TD ALIGN=RIGHT>31.629%</TD>
   <TD>2014-01-25</TD><TD ALIGN=RIGHT>31.629%</TD>
  <TD ALIGN=RIGHT>35.323%</TD></TR>
<TR>
  <TH>Rat&nbsp;rn6</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Chinese hamster&nbsp;criGri1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001895.4 54]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn6 rn6]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR07 Rattus<BR>norvegicus]</TD><TD>Rat</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jul.&nbsp;2014&nbsp;(RGSC&nbsp;6.0/rn6)</TD>
  <TD>RGSC Rnor_6.0</TD>
  <TD ALIGN=RIGHT>2014-07-08</TD>
  <TD ALIGN=RIGHT>2014-07-09</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000419365.1/ 55]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Cricetulus_griseus/C_griseus_v1.0/ Cricetulus<BR>griseus]</TD><TD>Chinese&nbsp;hamster</TD>
  <TD>Jul.&nbsp;2013&nbsp;(C_griseus_v1.0/criGri1)</TD>
  <TD>Beijing Genomics Institution-Shenzhen</TD>
  <TD ALIGN=RIGHT>2014-04-04</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Golden hamster&nbsp;mesAur1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349665.1/ 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mesocricetus_auratus/MesAur1.0/ Mesocricetus<BR>auratus]</TD><TD>Golden&nbsp;hamster</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Mar&nbsp;2013&nbsp;(MesAur1.0/mesAur1)</TD>
  <TD>Broad Institute GCA_000349665.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Prairie vole&nbsp;micOch1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Microtus_ochrogaster/MicOch1.0/ Microtus<BR>ochrogaster]</TD><TD>Prairie&nbsp;vole</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Oct&nbsp;2012&nbsp;(MicOch1.0/micOch1)</TD>
  <TD>Broad Institute GCA_000317375.1</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
   <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Shrew&nbsp;sorAra2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000181275.2/ 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Sorex_araneus/SorAra2.0/ Sorex<BR>araneus]</TD><TD>Shrew</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Aug.&nbsp;2008&nbsp;(Broad/sorAra2)</TD>
  <TD>Broad Institute SorAra2.0</TD>
  <TD ALIGN=RIGHT>2013-05-29</TD>
   <TD ALIGN=RIGHT>2013-05-29</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Wallaby&nbsp;macEug2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/233 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Sep.&nbsp;2009&nbsp;(TWGS&nbsp;Meug_1.1/macEug2)</TD>
  <TD>TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1)</TD>
  <TD ALIGN=RIGHT>2010-11-05</TD>
   <TD ALIGN=RIGHT>2011-12-02</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Opossum&nbsp;monDom5</TH>
   <TH>[http://www.broadinstitute.org/mammals/opossum 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>Oct.&nbsp;2006&nbsp;(Broad/monDom5)</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD>
  <TD ALIGN=RIGHT>2009-08-14</TD>
  <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD>2014-05-29</TD><TD ALIGN=RIGHT>14.370%</TD>
   <TD>2014-05-29</TD><TD ALIGN=RIGHT>14.370%</TD>
  <TD ALIGN=RIGHT>11.996%</TD></TR>
<TR>
  <TH>Tasmanian devil&nbsp;sarHar1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Spiny softshell turtle&nbsp;apaSpi1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 61]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian&nbsp;devil</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Feb.&nbsp;2011&nbsp;(WTSI&nbsp;Devil_ref&nbsp;v7.0/sarHar1)</TD>
  <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD>
  <TD ALIGN=RIGHT>2012-02-02</TD>
  <TD ALIGN=RIGHT>2012-02-08</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ 62]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=apaSpi1 apaSpi1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Apalone_spinifera/ASM38561v1/ Apalone<BR>spinifera]</TD><TD>Spiny&nbsp;softshell&nbsp;turtle</TD>
  <TD>May&nbsp;2013&nbsp;(ASM38561v1/apaSpi1)</TD>
  <TD>WUGSC GCA_000385615.1</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000344595.1/ 63]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1 cheMyd1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Chelonia_mydas/CheMyd_1.0/ Chelonia<BR>mydas]</TD><TD>Green&nbsp;seaturtle</TD>
  <TD>Mar&nbsp;2013&nbsp;(CheMyd_1.0/cheMyd1)</TD>
  <TD>BGI GCA_000344595.1</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD>2015-02-06</TD><TD ALIGN=RIGHT>6.296%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241765.2 64]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic2 chrPic2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY02 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted&nbsp;turtle</TD>
  <TD>Mar.&nbsp;2014&nbsp;(v3.0.3/chrPic2)</TD>
  <TD>International Painted Turtle Genome Sequencing Consortium</TD>
  <TD ALIGN=RIGHT>2014-04-29</TD>
  <TD ALIGN=RIGHT>2014-04-10</TD>
  <TD>2015-02-06</TD><TD ALIGN=RIGHT>6.708%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000230535.1/ 65]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pelSin1 pelSin1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pelodiscus_sinensis/PelSin_1.0/ Pelodiscus<BR>sinensis]</TD><TD>Chinese&nbsp;softshell&nbsp;turtle</TD>
  <TD>Oct&nbsp;2011&nbsp;(PelSin_1.0/pelSin1)</TD>
  <TD>Soft-shell Turtle Genome Consortium GCA_000230535.1</TD>
  <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Green seaturtle&nbsp;cheMyd1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/110 66]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.cheMyd1.tuning.Q.txt</TD>
   <TD>Mar.&nbsp;2007&nbsp;(WUGSC&nbsp;5.0.1/ornAna1)</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>WUSTL version 5.0.1</TD>
  <TD>2015-02-05</TD><TD ALIGN=RIGHT>2.457%</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>N/A</TD></TR>
  <TD ALIGN=RIGHT>2013-06-22</TD>
<TR>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
  <TH>Painted turtle&nbsp;chrPic2</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.chrPic2.tuning.Q.txt</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-05</TD><TD ALIGN=RIGHT>2.482%</TD>
   <TD ALIGN=RIGHT>N/A</TD></TR>
<TR>
  <TH>Chinese softshell turtle&nbsp;pelSin1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Platypus&nbsp;ornAna1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000281125.1/ 67]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Alligator_mississippiensis/allMis0.2/ Alligator<BR>mississippiensis]</TD><TD>American&nbsp;alligator</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Aug.&nbsp;2012&nbsp;(allMis0.2/allMis1)</TD>
  <TD>International Crocodilian Genomes Working Group</TD>
  <TD ALIGN=RIGHT>2013-06-07</TD>
   <TD ALIGN=RIGHT>2012-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>American alligator&nbsp;allMis1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ 68]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1 colLiv1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Columba_livia/Cliv_1.0/ Columba<BR>livia]</TD><TD>Rock&nbsp;pigeon</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Feb&nbsp;2013&nbsp;(Cliv_1.0/colLiv1)</TD>
  <TD>BGI GCA_000337935.1</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Rock pigeon&nbsp;colLiv1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/111 69]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Nov.&nbsp;2011&nbsp;(ICGSC&nbsp;Gallus_gallus-4.0/galGal4)</TD>
  <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD>
  <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Chicken&nbsp;galGal4</TH>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 70]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2010&nbsp;(Broad&nbsp;AnoCar2.0/anoCar2)</TD>
  <TD>Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)</TD>
  <TD ALIGN=RIGHT>2011-04-12</TD>
   <TD ALIGN=RIGHT>2011-04-13</TD>
  <TD>2015-02-06</TD><TD ALIGN=RIGHT>3.593%</TD>
</TR><TR>
</TR><TR>
   <TH>Lizard&nbsp;anoCar2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000355885.1/ 71]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anaPla1 anaPla1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anas_platyrhynchos/BGI_duck_1.0/ Anas<BR>platyrhynchos]</TD><TD>Mallard&nbsp;duck</TD>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.anoCar2.tuning.Q.txt</TD>
  <TD>Apr&nbsp;2013&nbsp;(BGI_duck_1.0/anaPla1)</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing GCA_000355885.1</TD>
   <TD>2015-02-05</TD><TD ALIGN=RIGHT>1.464%</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD ALIGN=RIGHT>N/A</TD></TR>
  <TD ALIGN=RIGHT>2013-06-27</TD>
<TR>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
  <TH>Mallard duck&nbsp;anaPla1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
</TR><TR>
   <TH>Turkey&nbsp;melGal1</TH>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 72]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Dec.&nbsp;2009&nbsp;(TGC&nbsp;Turkey_2.01/melGal1)</TD>
  <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD>
  <TD ALIGN=RIGHT>2010-11-04</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Saker falcon&nbsp;falChe1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ 73]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_cherrug/F_cherrug_v1.0/ Falco<BR>cherrug]</TD><TD>Saker&nbsp;falcon</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Feb&nbsp;2013&nbsp;(F_cherrug_v1.0/falChe1)</TD>
  <TD>BGI GCA_000337975.1</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Peregrine falcon&nbsp;falPer1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ 74]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_peregrinus/F_peregrinus_v1.0/ Falco<BR>peregrinus]</TD><TD>Peregrine&nbsp;falcon</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Feb&nbsp;2013&nbsp;(F_peregrinus_v1.0/falPer1)</TD>
  <TD>BGI GCA_000337955.1</TD>
  <TD ALIGN=RIGHT>2013-06-28</TD>
   <TD ALIGN=RIGHT>2013-06-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Parrot&nbsp;amaVit1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ 75]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1 amaVit1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Amazona_vittata/AV1/ Amazona<BR>vittata]</TD><TD>Parrot</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jan.&nbsp;2013&nbsp;(AV1/amaVit1)</TD>
  <TD>Puerto Rican Parrot Genome Project AV1</TD>
  <TD ALIGN=RIGHT>2013-03-27</TD>
   <TD ALIGN=RIGHT>2013-03-27</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Scarlet Macaw&nbsp;araMac1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ 76]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=araMac1 araMac1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ara_macao/SMACv1.1/ Ara<BR>macao]</TD><TD>Scarlet&nbsp;Macaw</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jun&nbsp;2013&nbsp;(SMACv1.1/araMac1)</TD>
  <TD>Texas A&M University GCA_000400695.1</TD>
  <TD ALIGN=RIGHT>2013-06-28</TD>
   <TD ALIGN=RIGHT>2013-06-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Tibetan ground jay&nbsp;pseHum1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331425.1/ 77]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pseudopodoces_humilis/PseHum1.0/ Pseudopodoces<BR>humilis]</TD><TD>Tibetan&nbsp;ground&nbsp;jay</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jan&nbsp;2013&nbsp;(PseHum1.0/pseHum1)</TD>
  <TD>Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Budgerigar&nbsp;melUnd1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 78]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Sep.&nbsp;2011&nbsp;(WUSTL&nbsp;v6.3/melUnd1)</TD>
  <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD>
  <TD ALIGN=RIGHT>2012-03-27</TD>
   <TD ALIGN=RIGHT>2012-03-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Collared flycatcher&nbsp;ficAlb2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ 79]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ficAlb2 ficAlb2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ficedula_albicollis/FicAlb1.5/ Ficedula<BR>albicollis]</TD><TD>Collared&nbsp;flycatcher</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jun&nbsp;2013&nbsp;(FicAlb1.5/ficAlb2)</TD>
  <TD>Uppsala University GCA_000247815.2</TD>
  <TD ALIGN=RIGHT>2013-06-29</TD>
   <TD ALIGN=RIGHT>2013-06-29</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>White-throated sparrow&nbsp;zonAlb1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ 80]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1 zonAlb1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Zonotrichia_albicollis/ASM38545v1/ Zonotrichia<BR>albicollis]</TD><TD>White-throated&nbsp;sparrow</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Apr&nbsp;2013&nbsp;(ASM38545v1/zonAlb1)</TD>
  <TD>White-throated sparrow consortium GCA_000385455.1</TD>
  <TD ALIGN=RIGHT>2013-06-26</TD>
   <TD ALIGN=RIGHT>2013-06-26</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Medium ground finch&nbsp;geoFor1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/156703 81]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKZB01 Geospiza<BR>fortis]</TD><TD>Medium&nbsp;ground&nbsp;finch</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Apr.&nbsp;2012&nbsp;(GeoFor_1.0/geoFor1)</TD>
  <TD>Beijing Genomics Institute</TD>
  <TD ALIGN=RIGHT>2012-07-26</TD>
   <TD ALIGN=RIGHT>2012-07-26</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Zebra finch&nbsp;taeGut2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000151805.2/ 82]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Taeniopygia_guttata/Taeniopygia_guttata-3.2.4/ Taeniopygia<BR>guttata]</TD><TD>Zebra&nbsp;finch</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Feb.&nbsp;2013&nbsp;(WashU&nbsp;taeGut324/taeGut2)</TD>
  <TD>Washington University School of Medicine</TD>
  <TD ALIGN=RIGHT>2013-06-05</TD>
   <TD ALIGN=RIGHT>2013-06-05</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Spotted gar&nbsp;lepOcu1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000242695.1/ 83]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Lepisosteus_oculatus/LepOcu1/ Lepisosteus<BR>oculatus]</TD><TD>Spotted&nbsp;gar</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Dec&nbsp;2011&nbsp;(LepOcu1/lepOcu1)</TD>
  <TD>Broad Institute of MIT and Harvard GCA_000242695.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>X. tropicalis&nbsp;xenTro7</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ 84]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/Xtropicalis_v7/ Xenopus<BR>tropicalis]</TD><TD>X.&nbsp;tropicalis</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Sep.&nbsp;2012&nbsp;(JGI&nbsp;7.0/xenTro7)</TD>
  <TD>US DOE Joint Genome Institute (JGI-PGF)</TD>
  <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD ALIGN=RIGHT>2013-06-14</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Coelacanth&nbsp;latCha1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 85]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Aug.&nbsp;2011&nbsp;(Broad/latCha1)</TD>
  <TD>Broad LatCha1 (GCA_000225785.1)</TD>
  <TD ALIGN=RIGHT>2012-01-11</TD>
   <TD ALIGN=RIGHT>2012-01-12</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Atlantic cod&nbsp;gadMor1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2661 86]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic&nbsp;cod</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2010&nbsp;(Genofisk&nbsp;GadMor_May2010/gadMor1)</TD>
  <TD>Genofisk GadMor_May2010 (GCA_000231765.1)</TD>
  <TD ALIGN=RIGHT>2011-12-29</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Stickleback&nbsp;gasAcu1</TH>
   <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 87]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Feb.&nbsp;2006&nbsp;(Broad/gasAcu1)</TD>
  <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Nile tilapia&nbsp;oreNil2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/59571 88]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile&nbsp;tilapia</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Jan.&nbsp;2011&nbsp;(Broad&nbsp;oreNil1.1/oreNil2)</TD>
  <TD>Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1)</TD>
  <TD ALIGN=RIGHT>2012-04-10</TD>
   <TD ALIGN=RIGHT>2012-04-11</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Tetraodon&nbsp;tetNig2</TH>
   <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 89]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Mar.&nbsp;2007&nbsp;(Genoscope&nbsp;8.0/tetNig2)</TD>
  <TD>Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000)</TD>
  <TD ALIGN=RIGHT>2010-06-07</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Princess of Burundi&nbsp;neoBri1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ 90]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Neolamprologus_brichardi/NeoBri1.0/ Neolamprologus<BR>brichardi]</TD><TD>Princess&nbsp;of&nbsp;Burundi</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2011&nbsp;(NeoBri1.0/neoBri1)</TD>
  <TD>Broad Institute of MIT and Harvard GCA_000239395.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Yellowbelly pufferfish&nbsp;takFla1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ 91]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Takifugu_flavidus/version_1_of_Takifugu_flavidus_genome/ Takifugu<BR>flavidus]</TD><TD>Yellowbelly&nbsp;pufferfish</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>May&nbsp;2013&nbsp;(version&nbsp;1&nbsp;of&nbsp;Takifugu&nbsp;flavidus&nbsp;genome/takFla1)</TD>
  <TD>IOCAS GCA_000400755.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Burton's mouthbreeder&nbsp;hapBur1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ 92]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Haplochromis_burtoni/AstBur1.0/ Haplochromis<BR>burtoni]</TD><TD>Burton's&nbsp;mouthbreeder</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Oct&nbsp;2011&nbsp;(AstBur1.0/hapBur1)</TD>
  <TD>Broad Institute of MIT and Harvard GCA_000239415.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Fugu&nbsp;fr3</TH>
   <TH>[http://www.fugu-sg.org/ 93]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Oct.&nbsp;2011&nbsp;(FUGU5/fr3)</TD>
  <TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD>
  <TD ALIGN=RIGHT>2011-11-16</TD>
   <TD ALIGN=RIGHT>2011-11-17</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Mexican tetra (cavefish)&nbsp;astMex1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000372685.1/ 94]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=astMex1 astMex1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Astyanax_mexicanus/Astyanax_mexicanus-1.0.2/ Astyanax<BR>mexicanus]</TD><TD>Mexican&nbsp;tetra&nbsp;(cavefish)</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Apr&nbsp;2013&nbsp;(Astyanax_mexicanus-1.0.2/astMex1)</TD>
  <TD>Aquatic Genome Models GCA_000372685.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Lamprey&nbsp;petMar2</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12880 95]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFG01 Petromyzon<BR>marinus]</TD><TD>Lamprey</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Sep.&nbsp;2010&nbsp;(WUGSC&nbsp;7.0/petMar2)</TD>
  <TD>GSC Washington University School of Medicine</TD>
  <TD ALIGN=RIGHT>2012-10-12</TD>
   <TD ALIGN=RIGHT>2012-10-12</TD>
  <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.265%</TD>
</TR><TR>
</TR><TR>
   <TH>Zebrafish&nbsp;danRer7</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.5 96]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ01 Danio<BR>rerio]</TD><TD>Zebrafish</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Sep.&nbsp;2014&nbsp;(GRCz10/danRer10)</TD>
  <TD>Genome Reference Consortium Zebrafish Build 10</TD>
  <TD ALIGN=RIGHT>2015-01-26</TD>
   <TD ALIGN=RIGHT>2015-01-22</TD>
  <TD>2015-02-08</TD><TD ALIGN=RIGHT>3.357%</TD>
</TR><TR>
</TR><TR>
   <TH>Zebra Mbuna&nbsp;mayZeb1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ 97]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Maylandia_zebra/MetZeb1.1/ Maylandia<BR>zebra]</TD><TD>Zebra&nbsp;Mbuna</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Mar&nbsp;2012&nbsp;(MetZeb1.1/mayZeb1)</TD>
  <TD>Broad Institute GCA_000238955.2</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>2015-02-07</TD><TD ALIGN=RIGHT>1.805%</TD>
</TR><TR>
</TR><TR>
   <TH>Pundamilia nyererei&nbsp;punNye1</TH>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ 98]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pundamilia_nyererei/PunNye1.0/ Pundamilia<BR>nyererei]</TD><TD>Pundamilia&nbsp;nyererei</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Oct&nbsp;2011&nbsp;(PunNye1.0/punNye1)</TD>
  <TD>Broad Institute of MIT and Harvard GCA_000239375.1</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.787%</TD>
</TR><TR>
</TR><TR>
   <TH>Medaka&nbsp;oryLat2</TH>
   <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 99]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
   <TD>Oct.&nbsp;2005&nbsp;(NIG/UT&nbsp;MEDAKA1/oryLat2)</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000)</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD>2015-02-06</TD><TD ALIGN=RIGHT>2.002%</TD>
   <TD>2015-02-06</TD><TD ALIGN=RIGHT>2.002%</TD>
   <TD ALIGN=RIGHT>6.853%</TD></TR>
</TR><TR>
<TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ 100]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1 xipMac1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xiphophorus_maculatus/Xiphophorus_maculatus-4.4.2/ Xiphophorus<BR>maculatus]</TD><TD>Southern&nbsp;platyfish</TD>
   <TH>Southern platyfish&nbsp;xipMac1</TH>
   <TD>Jan&nbsp;2012&nbsp;(Xiphophorus_maculatus-4.4.2/xipMac1)</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD>Washington University School of Medicine GCA_000241075.1</TD>
  <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
  <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.898%</TD>
</TR>
</TR>
</TABLE>
</TABLE>

Revision as of 19:42, 10 February 2015

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence		 UCSC db name/
genome-preview
browser		 Scientific name/
assembly information		 Common
name		 assembly date (version) source
version		 Repeat
Masker		 Window
Masker		 chain
on hg38		 % of hg38
matched
(chainLink table)
01hg38Homo
sapiens		Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) 2014-01-10 2013-12-25 2015-01-14N/A
02panTro4Pan
troglodytes		Chimp Feb. 2011 (CSAC 2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2014-05-2793.112%
03gorGor3Gorilla
gorilla
gorilla		Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 2013-06-21 2014-12-1588.005%
04ponAbe2Pongo
pygmaeus
abelii		Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 2013-06-21 2014-09-0289.187%
05nomLeu3Nomascus
leucogenys		Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) Gibbon Genome Sequencing Consortium 2013-03-04 2013-03-01 2014-12-1286.379%
06macFas5Macaca
fascicularis		Crab-eating macaque Jun 2013 (Macaca_fascicularis_5.0/macFas5) Washington University (WashU) GCA_000364345.1 2013-06-30 2013-06-30 2014-12-1485.675%
07rheMac3Macaca
mulatta		Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2014-01-2879.729%
08papAnu2Papio
anubis		Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) Baylor College of Medicine 2012-07-22 2012-08-07 2014-12-1384.179%
09saiBol1Saimiri
boliviensis		Squirrel monkey Oct. 2011 (Broad/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2014-12-1370.565%
10chlSab2Chlorocebus
sabaeus		Green monkey 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) Vervet Genomics Consortium GCA_000409795.2 2014-04-10 2014-04-10 2014-07-1184.393%
11calJac3Callithrix
jacchus		Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 2013-06-21 2014-12-1371.709%
12oryAfe1Orycteropus
afer
afer		Aardvark May 2012 (OryAfe1.0/oryAfe1) Broad Institute GCA_000298275.1 2013-07-07 2013-07-07 N/AN/A
13otoGar3Otolemur
garnettii		Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2014-12-1349.485%
14cerSim1Ceratotherium
simum		White rhinoceros May 2012 (CerSimSim1.0/cerSim1) Broad Institute 2012-08-28 2012-08-28 N/AN/A
15chrAsi1Chrysochloris
asiatica		Cape golden mole Aug 2012 (ChrAsi1.0/chrAsi1) Broad Institute GCA_000296735.1 2013-07-07 2013-07-07 N/AN/A
16eptFus1Eptesicus
fuscus		Big brown bat Jul 2012 (EptFus1.0/eptFus1) Broad Institute GCA_000308155.1 2013-08-28 2013-08-28 N/AN/A
17tupChi1Tupaia
chinensis		Chinese tree shrew Jan 2013 (TupChi_1.0/tupChi1) BGI GCA_000334495.1 2013-07-05 2013-07-05 N/AN/A
18equCab2Equus
caballus		Horse Sep. 2007 (Broad/equCab2) Broad Institute EquCab2 2009-08-14 2013-06-21 N/AN/A
19camFer1Camelus
ferus		Bactrian camel Dec 2011 (CB1/camFer1) The Bactrian Camels Genome Sequencing and Analysis Consortium GCA_000311805.1 2013-07-12 2013-07-12 N/AN/A
20vicPac2Vicugna
pacos		Alpaca Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) Broad Institute 2013-06-10 2013-06-10 N/AN/A
21turTru2Tursiops
truncatus		Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) 2012-04-14 2012-04-14 N/AN/A
22canFam3Canis
lupus
familiaris		Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2014-01-2749.978%
23orcOrc1Orcinus
orca		Killer whale Jan 2013 (Oorc_1.1/orcOrc1) Marine mammals GCA_000331955.1 2013-08-20 2013-08-20 N/AN/A
24speTri2Spermophilus
tridecemlineatus		Squirrel Nov. 2011 (Broad/speTri2) Broad Institute (GCA_000236235.1) 2012-03-14 2012-03-15 N/AN/A
25pteAle1Pteropus
alecto		Black flying-fox Aug 2012 (ASM32557v1/pteAle1) BGI GCA_000325575.1 2013-08-28 2013-08-28 N/AN/A
26susScr3Sus
scrofa		Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) 2012-04-12 2012-04-13 N/AN/A
27loxAfr3Loxodonta
africana		Elephant Jul. 2009 (Broad/loxAfr3) Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-09-02 2013-06-21 N/AN/A
28hetGla2Heterocephalus
glaber		Naked mole-rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) 2012-04-14 2012-04-14 N/AN/A
29pteVam1Pteropus
vampyrus		Megabat Jul. 2008 (Broad/pteVam1) Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2009-09-02 2012-05-02 N/AN/A
30felCat8Felis
catus		Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) International Cat Genome Sequencing Consortium 2014-11-22 2014-11-22 N/AN/A
31ailMel1Ailuropoda
melanoleuca		Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) BGI-Shenzhen AilMel 1.0 Dec. 2009 2010-02-03 2013-06-21 N/AN/A
32musFur1Mustela
putorius
furo		Ferret  Apr. 2011 (MusPutFur1.0/musFur1) Ferret Genome Sequencing Consortium 2013-03-05 2013-03-05 N/AN/A
33cavPor3Cavia
porcellus		Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 N/AN/A
34dasNov3Dasypus
novemcinctus		Armadillo Dec. 2011 (Baylor/dasNov3) Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) 2012-04-12 2012-04-13 N/AN/A
35oryCun2Oryctolagus
cuniculus		Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 2013-06-21 N/AN/A
36panHod1Pantholops
hodgsonii		Tibetan antelope May 2013 (PHO1.0/panHod1) BGI GCA_000400835.1 2013-07-15 2013-07-15 N/AN/A
37lepWed1Leptonychotes
weddellii		Weddell seal Mar 2013 (LepWed1.0/lepWed1) Broad Institute GCA_000349705.1 2013-07-11 2013-07-11 N/AN/A
38odoRosDiv1Odobenus
rosmarus
divergens		Pacific walrus Jan 2013 (Oros_1.0/odoRosDiv1) Marine mammals GCA_000321225.1 2013-07-12 2013-07-12 N/AN/A
39myoDav1Myotis
davidii		David's myotis (bat) Aug 2012 (ASM32734v1/myoDav1) BGI GCA_000327345.1 2013-08-28 2013-08-28 N/AN/A
40bosTau8Bos
taurus		Cow Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) University of Maryland Bos_taurus_UMD_3.1.1 2014-09-11 2014-09-12 2014-10-1645.975%
41capHir1Capra
hircus		Domestic goat May 2012 (CHIR_1.0/capHir1) International Goat Genome Consortium GCA_000317765.1 2013-07-15 2013-07-15 N/AN/A
42oviAri3Ovis
aries		Sheep Aug. 2012 (ISGC Oar_v3.1/oviAri3) International Sheep Genome Consortium 2013-06-10 2013-06-09 2015-01-2141.193%
43myoLuc2Myotis
lucifugus		Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) 2010-11-03 2013-06-21 N/AN/A
44eleEdw1Elephantulus
edwardii		Cape elephant shrew Aug 2012 (EleEdw1.0/eleEdw1) Broad Institute GCA_000299155.1 2013-07-07 2013-07-07 N/AN/A
45triMan1Trichechus
manatus
latirostris		Manatee Oct. 2011 (Broad v1.0/triMan1) Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) 2012-03-28 2012-03-29 N/AN/A
46jacJac1Jaculus
jaculus		Lesser Egyptian jerboa May 2012 (JacJac1.0/jacJac1) Broad Institute GCA_000280705.1 2013-07-15 2013-07-15 N/AN/A
47chiLan1Chinchilla
lanigera		Chinchilla May 2012  (ChiLan1.0/chiLan1) Broad Institute 2012-07-28 2012-07-27 N/AN/A
48conCri1Condylura
cristata		Star-nosed mole Mar 2012 (ConCri1.0/conCri1) Broad Institute GCA_000260355.1 2013-07-09 2013-07-09 N/AN/A
49octDeg1Octodon
degus		Brush-tailed rat Apr 2012 (OctDeg1.0/octDeg1) Broad Institute GCA_000260255.1 2013-07-07 2013-07-07 N/AN/A
50ochPri3Ochotona
princeps		Pika May 2012 (OchPri3.0/ochPri3) Broad Institute 2013-06-20 2013-06-18 N/AN/A
51eriEur2Erinaceus
europaeus		Hedgehog May 2012 (EriEur2.0/eriEur2) Broad Institute EriEur2.0 2013-06-12 2013-06-07 N/AN/A
52echTel2Echinops
telfairi		Tenrec Nov. 2012 (Broad/echTel2) Broad/EchTel2.0 2013-05-30 2013-05-30 N/AN/A
53mm10Mus
musculus		Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2014-01-2531.629%
54rn6Rattus
norvegicus		Rat Jul. 2014 (RGSC 6.0/rn6) RGSC Rnor_6.0 2014-07-08 2014-07-09 N/AN/A
55criGri1Cricetulus
griseus		Chinese hamster Jul. 2013 (C_griseus_v1.0/criGri1) Beijing Genomics Institution-Shenzhen 2014-04-04 2013-08-28 N/AN/A
56mesAur1Mesocricetus
auratus		Golden hamster Mar 2013 (MesAur1.0/mesAur1) Broad Institute GCA_000349665.1 2013-08-28 2013-08-28 N/AN/A
57micOch1Microtus
ochrogaster		Prairie vole Oct 2012 (MicOch1.0/micOch1) Broad Institute GCA_000317375.1 2013-08-26 2013-08-26 N/AN/A
58sorAra2Sorex
araneus		Shrew Aug. 2008 (Broad/sorAra2) Broad Institute SorAra2.0 2013-05-29 2013-05-29 N/AN/A
59macEug2Macropus
eugenii		Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) 2010-11-05 2011-12-02 N/AN/A
60monDom5Monodelphis
domestica		Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2014-05-2914.370%
61sarHar1Sarcophilus
harrisii		Tasmanian devil Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) 2012-02-02 2012-02-08 N/AN/A
62apaSpi1Apalone
spinifera		Spiny softshell turtle May 2013 (ASM38561v1/apaSpi1) WUGSC GCA_000385615.1 2013-08-26 2013-08-26 N/AN/A
63cheMyd1Chelonia
mydas		Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) BGI GCA_000344595.1 2013-08-26 2013-08-26 2015-02-066.296%
64chrPic2Chrysemys
picta
bellii		Painted turtle Mar. 2014 (v3.0.3/chrPic2) International Painted Turtle Genome Sequencing Consortium 2014-04-29 2014-04-10 2015-02-066.708%
65pelSin1Pelodiscus
sinensis		Chinese softshell turtle Oct 2011 (PelSin_1.0/pelSin1) Soft-shell Turtle Genome Consortium GCA_000230535.1 2013-07-01 2013-07-01 N/AN/A
66ornAna1Ornithorhynchus
anatinus		Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) WUSTL version 5.0.1 2009-08-15 2013-06-22 N/AN/A
67allMis1Alligator
mississippiensis		American alligator Aug. 2012 (allMis0.2/allMis1) International Crocodilian Genomes Working Group 2013-06-07 2012-08-28 N/AN/A
68colLiv1Columba
livia		Rock pigeon Feb 2013 (Cliv_1.0/colLiv1) BGI GCA_000337935.1 2013-06-27 2013-06-27 N/AN/A
69galGal4Gallus
gallus		Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) ICGSC Gallus_gallus-4.0 (GCA_000002315.2) 2012-01-04 2012-01-04 N/AN/A
70anoCar2Anolis
carolinensis		Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2015-02-063.593%
71anaPla1Anas
platyrhynchos		Mallard duck Apr 2013 (BGI_duck_1.0/anaPla1) State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing GCA_000355885.1 2013-06-27 2013-06-27 N/AN/A
72melGal1Meleagris
gallopavo		Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 2010-11-04 2013-06-21 N/AN/A
73falChe1Falco
cherrug		Saker falcon Feb 2013 (F_cherrug_v1.0/falChe1) BGI GCA_000337975.1 2013-06-27 2013-06-27 N/AN/A
74falPer1Falco
peregrinus		Peregrine falcon Feb 2013 (F_peregrinus_v1.0/falPer1) BGI GCA_000337955.1 2013-06-28 2013-06-28 N/AN/A
75amaVit1Amazona
vittata		Parrot Jan. 2013 (AV1/amaVit1) Puerto Rican Parrot Genome Project AV1 2013-03-27 2013-03-27 N/AN/A
76araMac1Ara
macao		Scarlet Macaw Jun 2013 (SMACv1.1/araMac1) Texas A&M University GCA_000400695.1 2013-06-28 2013-06-28 N/AN/A
77pseHum1Pseudopodoces
humilis		Tibetan ground jay Jan 2013 (PseHum1.0/pseHum1) Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1 2013-06-27 2013-06-27 N/AN/A
78melUnd1Melopsittacus
undulatus		Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 2012-03-27 2012-03-28 N/AN/A
79ficAlb2Ficedula
albicollis		Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) Uppsala University GCA_000247815.2 2013-06-29 2013-06-29 N/AN/A
80zonAlb1Zonotrichia
albicollis		White-throated sparrow Apr 2013 (ASM38545v1/zonAlb1) White-throated sparrow consortium GCA_000385455.1 2013-06-26 2013-06-26 N/AN/A
81geoFor1Geospiza
fortis		Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) Beijing Genomics Institute 2012-07-26 2012-07-26 N/AN/A
82taeGut2Taeniopygia
guttata		Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) Washington University School of Medicine 2013-06-05 2013-06-05 N/AN/A
83lepOcu1Lepisosteus
oculatus		Spotted gar Dec 2011 (LepOcu1/lepOcu1) Broad Institute of MIT and Harvard GCA_000242695.1 2013-08-28 2013-08-28 N/AN/A
84xenTro7Xenopus
tropicalis		X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) US DOE Joint Genome Institute (JGI-PGF) 2013-06-21 2013-06-14 N/AN/A
85latCha1Latimeria
chalumnae		Coelacanth Aug. 2011 (Broad/latCha1) Broad LatCha1 (GCA_000225785.1) 2012-01-11 2012-01-12 N/AN/A
86gadMor1Gadus
morhua		Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1) Genofisk GadMor_May2010 (GCA_000231765.1) 2011-12-29 2012-01-04 N/AN/A
87gasAcu1Gasterosteus
aculeatus		Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-15 N/AN/A
88oreNil2Oreochromis
niloticus		Nile tilapia Jan. 2011 (Broad oreNil1.1/oreNil2) Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) 2012-04-10 2012-04-11 N/AN/A
89tetNig2Tetraodon
nigroviridis		Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 2010-06-07 2009-09-02 N/AN/A
90neoBri1Neolamprologus
brichardi		Princess of Burundi May 2011 (NeoBri1.0/neoBri1) Broad Institute of MIT and Harvard GCA_000239395.1 2013-08-28 2013-08-28 N/AN/A
91takFla1Takifugu
flavidus		Yellowbelly pufferfish May 2013 (version 1 of Takifugu flavidus genome/takFla1) IOCAS GCA_000400755.1 2013-08-28 2013-08-28 N/AN/A
92hapBur1Haplochromis
burtoni		Burton's mouthbreeder Oct 2011 (AstBur1.0/hapBur1) Broad Institute of MIT and Harvard GCA_000239415.1 2013-08-28 2013-08-28 N/AN/A
93fr3Takifugu
rubripes		Fugu Oct. 2011 (FUGU5/fr3) Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 2011-11-16 2011-11-17 N/AN/A
94astMex1Astyanax
mexicanus		Mexican tetra (cavefish) Apr 2013 (Astyanax_mexicanus-1.0.2/astMex1) Aquatic Genome Models GCA_000372685.1 2013-08-28 2013-08-28 N/AN/A
95petMar2Petromyzon
marinus		Lamprey Sep. 2010 (WUGSC 7.0/petMar2) GSC Washington University School of Medicine 2012-10-12 2012-10-12 2015-02-061.265%
96danRer10Danio
rerio		Zebrafish Sep. 2014 (GRCz10/danRer10) Genome Reference Consortium Zebrafish Build 10 2015-01-26 2015-01-22 2015-02-083.357%
97mayZeb1Maylandia
zebra		Zebra Mbuna Mar 2012 (MetZeb1.1/mayZeb1) Broad Institute GCA_000238955.2 2013-08-28 2013-08-28 2015-02-071.805%
98punNye1Pundamilia
nyererei		Pundamilia nyererei Oct 2011 (PunNye1.0/punNye1) Broad Institute of MIT and Harvard GCA_000239375.1 2013-08-28 2013-08-28 2015-02-061.787%
99oryLat2Oryzias
latipes		Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2009-08-15 2009-08-15 2015-02-062.002%
100xipMac1Xiphophorus
maculatus		Southern platyfish Jan 2012 (Xiphophorus_maculatus-4.4.2/xipMac1) Washington University School of Medicine GCA_000241075.1 2013-07-01 2013-07-01 2015-02-061.898%
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