Hg38 100-way Genome size statistics: Difference between revisions
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<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Chimp]</TD><TH ALIGN=CENTER>6X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Chimp]</TD><TH ALIGN=CENTER>6X</TH> | ||
<TH ALIGN=CENTER>143986469</TH> | <TH ALIGN=CENTER>143986469</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>93.112%</TD> | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
Line 62: | Line 62: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla]</TD><TH ALIGN=CENTER>2.1X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla]</TD><TH ALIGN=CENTER>2.1X</TH> | ||
<TH ALIGN=CENTER>145327772</TH> | <TH ALIGN=CENTER>145327772</TH> | ||
<TD ALIGN=CENTER> | <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>88.005%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
Line 71: | Line 71: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Orangutan]</TD><TH ALIGN=CENTER>6X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Orangutan]</TD><TH ALIGN=CENTER>6X</TH> | ||
<TH ALIGN=CENTER>135191526</TH> | <TH ALIGN=CENTER>135191526</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>89.187%</TD> | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
Line 80: | Line 80: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu_3.0/ Gibbon]</TD><TH ALIGN=CENTER>5.6X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu_3.0/ Gibbon]</TD><TH ALIGN=CENTER>5.6X</TH> | ||
<TH ALIGN=CENTER>117381234</TH> | <TH ALIGN=CENTER>117381234</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>86.379%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 06]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH> | ||
<TH ALIGN=RIGHT>34,103</TH> | |||
<TD ALIGN=RIGHT>2,969,988,180</TD><TD ALIGN=RIGHT>2,639,145,830</TD> | |||
<TD ALIGN=RIGHT>330,842,350</TD><TD ALIGN=RIGHT>% 48.54</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Rhesus]</TD><TH ALIGN=CENTER>50X</TH> | |||
<TH ALIGN=CENTER>150158102</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>80.828%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]</TH> | |||
<TH ALIGN=RIGHT>7,601</TH> | <TH ALIGN=RIGHT>7,601</TH> | ||
<TD ALIGN=RIGHT>2,946,843,737</TD><TD ALIGN=RIGHT>2,803,866,385</TD> | <TD ALIGN=RIGHT>2,946,843,737</TD><TD ALIGN=RIGHT>2,803,866,385</TD> | ||
Line 89: | Line 98: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Crab-eating macaque]</TD><TH ALIGN=CENTER>68X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Crab-eating macaque]</TD><TH ALIGN=CENTER>68X</TH> | ||
<TH ALIGN=CENTER>152835861</TH> | <TH ALIGN=CENTER>152835861</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>85.675%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/54005 08]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/54005 08]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH> | ||
Line 107: | Line 107: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Baboon]</TD><TH ALIGN=CENTER>85X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Baboon]</TD><TH ALIGN=CENTER>85X</TH> | ||
<TH ALIGN=CENTER>139646187</TH> | <TH ALIGN=CENTER>139646187</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>84.179%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621 09]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2]</TH> | ||
<TH ALIGN=RIGHT>2,004</TH> | <TH ALIGN=RIGHT>2,004</TH> | ||
<TD ALIGN=RIGHT>2,789,656,328</TD><TD ALIGN=RIGHT>2,752,000,999</TD> | <TD ALIGN=RIGHT>2,789,656,328</TD><TD ALIGN=RIGHT>2,752,000,999</TD> | ||
Line 125: | Line 116: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AQIB01 Green monkey]</TD><TH ALIGN=CENTER>95X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AQIB01 Green monkey]</TD><TH ALIGN=CENTER>95X</TH> | ||
<TH ALIGN=CENTER>101219884</TH> | <TH ALIGN=CENTER>101219884</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>84.393%</TD> | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ | <TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 10]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH> | ||
<TH ALIGN=RIGHT>14,205</TH> | <TH ALIGN=RIGHT>14,205</TH> | ||
<TD ALIGN=RIGHT>2,914,958,544</TD><TD ALIGN=RIGHT>2,752,505,800</TD> | <TD ALIGN=RIGHT>2,914,958,544</TD><TD ALIGN=RIGHT>2,752,505,800</TD> | ||
Line 134: | Line 125: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Marmoset]</TD><TH ALIGN=CENTER>6X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Marmoset]</TD><TH ALIGN=CENTER>6X</TH> | ||
<TH ALIGN=CENTER>132174527</TH> | <TH ALIGN=CENTER>132174527</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>71.709%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/67945 11]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,685</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2,608,572,064</TD><TD ALIGN=RIGHT>2,477,131,095</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>131,440,969</TD><TD ALIGN=RIGHT>% 46.69</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Squirrel monkey]</TD><TH ALIGN=CENTER>80X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>18744880</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>70.565%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 12]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH> | ||
<TH ALIGN=RIGHT>7,793</TH> | <TH ALIGN=RIGHT>7,793</TH> | ||
<TD ALIGN=RIGHT>2,519,724,550</TD><TD ALIGN=RIGHT>2,359,530,453</TD> | <TD ALIGN=RIGHT>2,519,724,550</TD><TD ALIGN=RIGHT>2,359,530,453</TD> | ||
Line 152: | Line 143: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Bushbaby]</TD><TH ALIGN=CENTER>137X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Bushbaby]</TD><TH ALIGN=CENTER>137X</TH> | ||
<TH ALIGN=CENTER>13852661</TH> | <TH ALIGN=CENTER>13852661</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>53.196%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000334495.1/ 13]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1]</TH> | |||
<TH ALIGN=RIGHT>50,750</TH> | |||
<TD ALIGN=RIGHT>2,846,580,235</TD><TD ALIGN=RIGHT>2,706,389,135</TD> | |||
<TD ALIGN=RIGHT>140,191,100</TD><TD ALIGN=RIGHT>% 40.02</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Tupaia_chinensis/TupChi_1.0/ Chinese tree shrew]</TD><TH ALIGN=CENTER>80X</TH> | |||
<TH ALIGN=CENTER>3670124</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.256%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 14]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH> | |||
<TH ALIGN=RIGHT>12,483</TH> | |||
<TD ALIGN=RIGHT>2,478,393,770</TD><TD ALIGN=RIGHT>2,311,060,300</TD> | |||
<TD ALIGN=RIGHT>167,333,470</TD><TD ALIGN=RIGHT>% 36.27</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Squirrel]</TD><TH ALIGN=CENTER>495X</TH> | |||
<TH ALIGN=CENTER>8192786</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>48.283%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000280705.1/ 15]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1]</TH> | |||
<TH ALIGN=RIGHT>10,896</TH> | |||
<TD ALIGN=RIGHT>2,835,242,767</TD><TD ALIGN=RIGHT>2,470,259,869</TD> | |||
<TD ALIGN=RIGHT>364,982,898</TD><TD ALIGN=RIGHT>% 37.29</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Jaculus_jaculus/JacJac1.0/ Lesser Egyptian jerboa]</TD><TH ALIGN=CENTER>78X</TH> | |||
<TH ALIGN=CENTER>22080993</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>34.153%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ 16]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>6,335</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,287,340,943</TD><TD ALIGN=RIGHT>2,104,321,675</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>183,019,268</TD><TD ALIGN=RIGHT>% 23.89</TD> | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Microtus_ochrogaster/MicOch1.0/ Prairie vole]</TD><TH ALIGN=CENTER>94X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>61813736</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>31.489%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000419365.1/ 17]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1]</TH> | |||
<TH ALIGN=RIGHT>52,711</TH> | |||
<TD ALIGN=RIGHT>2,360,146,428</TD><TD ALIGN=RIGHT>2,301,325,917</TD> | |||
<TD ALIGN=RIGHT>58,820,511</TD><TD ALIGN=RIGHT>% 27.06</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Cricetulus_griseus/C_griseus_v1.0/ Chinese hamster]</TD><TH ALIGN=CENTER>130X</TH> | |||
<TH ALIGN=CENTER>1558295</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>33.169%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349665.1/ 18]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1]</TH> | |||
<TH ALIGN=RIGHT>21,484</TH> | |||
<TD ALIGN=RIGHT>2,504,925,039</TD><TD ALIGN=RIGHT>2,076,176,254</TD> | |||
<TD ALIGN=RIGHT>428,748,785</TD><TD ALIGN=RIGHT>% 25.70</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mesocricetus_auratus/MesAur1.0/ Golden hamster]</TD><TH ALIGN=CENTER>115X</TH> | |||
<TH ALIGN=CENTER>12753307</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>30.803%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 19]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH> | |||
<TH ALIGN=RIGHT>66</TH> | |||
<TD ALIGN=RIGHT>2,730,871,774</TD><TD ALIGN=RIGHT>2,652,783,500</TD> | |||
<TD ALIGN=RIGHT>78,088,274</TD><TD ALIGN=RIGHT>% 45.18</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mouse]</TD><TH ALIGN=CENTER>20X</TH> | |||
<TH ALIGN=CENTER>130694993</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>31.653%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001895.4 20]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn6 rn6]</TH> | |||
<TH ALIGN=RIGHT>953</TH> | |||
<TD ALIGN=RIGHT>2,870,182,909</TD><TD ALIGN=RIGHT>2,729,860,805</TD> | |||
<TD ALIGN=RIGHT>140,322,104</TD><TD ALIGN=RIGHT>% 43.31</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR07 Rat]</TD><TH ALIGN=CENTER>10X</TH> | |||
<TH ALIGN=CENTER>145729302</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>31.077%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/72441 21]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH> | |||
<TH ALIGN=RIGHT>4,229</TH> | |||
<TD ALIGN=RIGHT>2,618,204,639</TD><TD ALIGN=RIGHT>2,314,771,103</TD> | |||
<TD ALIGN=RIGHT>303,433,536</TD><TD ALIGN=RIGHT>% 32.31</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Naked mole-rat]</TD><TH ALIGN=CENTER>90X</TH> | |||
<TH ALIGN=CENTER>20532749</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>46.248%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 22]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH> | |||
<TH ALIGN=RIGHT>3,144</TH> | |||
<TD ALIGN=RIGHT>2,723,219,641</TD><TD ALIGN=RIGHT>2,663,369,733</TD> | |||
<TD ALIGN=RIGHT>59,849,908</TD><TD ALIGN=RIGHT>% 27.53</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Guinea pig]</TD><TH ALIGN=CENTER>6.76X</TH> | |||
<TH ALIGN=CENTER>27942054</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>42.371%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ 23]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,838</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2,390,852,391</TD><TD ALIGN=RIGHT>2,284,276,400</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>106,575,991</TD><TD ALIGN=RIGHT>% 30.82</TD> | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chinchilla_lanigera/ChiLan1.0/ Chinchilla]</TD><TH ALIGN=CENTER>87X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>21893125</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.665%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260255.1/ 24]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>7,134</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,995,882,938</TD><TD ALIGN=RIGHT>2,526,254,692</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>469,628,246</TD><TD ALIGN=RIGHT>% 26.47</TD> | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Octodon_degus/OctDeg1.0/ Brush-tailed rat]</TD><TH ALIGN=CENTER>80X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>12091372</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>40.238%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 25]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>3,242</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,737,490,501</TD><TD ALIGN=RIGHT>2,604,023,284</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>133,467,217</TD><TD ALIGN=RIGHT>% 43.74</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Rabbit]</TD><TH ALIGN=CENTER>6.51X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>111795807</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>42.911%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000292845.1/ 26]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>10,420</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,229,835,716</TD><TD ALIGN=RIGHT>1,943,987,870</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>285,847,846</TD><TD ALIGN=RIGHT>% 29.53</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ochotona_princeps/OchPri3.0/ Pika]</TD><TH ALIGN=CENTER>103X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>26863993</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>33.618%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/13421 27]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>4,583</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,808,525,991</TD><TD ALIGN=RIGHT>2,518,987,191</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>289,538,800</TD><TD ALIGN=RIGHT>% 44.30</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Pig]</TD><TH ALIGN=CENTER>24X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>148491826</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>44.676%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ 28]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]</TH> | ||
<TH ALIGN=RIGHT>276,611</TH> | <TH ALIGN=RIGHT>276,611</TH> | ||
<TD ALIGN=RIGHT>2,172,177,994</TD><TD ALIGN=RIGHT>2,078,582,856</TD> | <TD ALIGN=RIGHT>2,172,177,994</TD><TD ALIGN=RIGHT>2,078,582,856</TD> | ||
Line 215: | Line 287: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Alpaca]</TD><TH ALIGN=CENTER>22X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Alpaca]</TD><TH ALIGN=CENTER>22X</TH> | ||
<TH ALIGN=CENTER>7263804</TH> | <TH ALIGN=CENTER>7263804</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>48.909%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 29]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=camFer1 camFer1]</TH> | |||
<TH ALIGN=RIGHT>13,334</TH> | |||
<TD ALIGN=RIGHT>2,009,194,609</TD><TD ALIGN=RIGHT>1,985,416,433</TD> | |||
<TD ALIGN=RIGHT>23,778,176</TD><TD ALIGN=RIGHT>% 33.32</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Camelus_ferus/CB1/ Bactrian camel]</TD><TH ALIGN=CENTER>30X</TH> | |||
<TH ALIGN=CENTER>2005940</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>49.095%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/20365 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/20365 30]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH> | ||
<TH ALIGN=RIGHT>240,901</TH> | <TH ALIGN=RIGHT>240,901</TH> | ||
<TD ALIGN=RIGHT>2,551,996,573</TD><TD ALIGN=RIGHT>2,332,402,443</TD> | <TD ALIGN=RIGHT>2,551,996,573</TD><TD ALIGN=RIGHT>2,332,402,443</TD> | ||
Line 224: | Line 305: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Dolphin]</TD><TH ALIGN=CENTER>3.5X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Dolphin]</TD><TH ALIGN=CENTER>3.5X</TH> | ||
<TH ALIGN=CENTER>116261</TH> | <TH ALIGN=CENTER>116261</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>49.728%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ 31]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1]</TH> | ||
<TH ALIGN=RIGHT>1,668</TH> | <TH ALIGN=RIGHT>1,668</TH> | ||
<TD ALIGN=RIGHT>2,372,919,877</TD><TD ALIGN=RIGHT>2,249,582,112</TD> | <TD ALIGN=RIGHT>2,372,919,877</TD><TD ALIGN=RIGHT>2,249,582,112</TD> | ||
Line 242: | Line 314: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Killer whale]</TD><TH ALIGN=CENTER>200X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Killer whale]</TD><TH ALIGN=CENTER>200X</TH> | ||
<TH ALIGN=CENTER>12735091</TH> | <TH ALIGN=CENTER>12735091</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>50.709%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400835.1/ 32]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>15,059</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,696,886,330</TD><TD ALIGN=RIGHT>2,507,986,438</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>188,899,892</TD><TD ALIGN=RIGHT>% 42.51</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pantholops_hodgsonii/PHO1.0/ Tibetan antelope]</TD><TH ALIGN=CENTER>67X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>2772860</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.619%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/189361 33]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau8 bosTau8]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>3,179</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2,670,044,500</TD><TD ALIGN=RIGHT>2,649,304,231</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>20,740,269</TD><TD ALIGN=RIGHT>% 48.69</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=DAAA02 Cow]</TD><TH ALIGN=CENTER>9X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>105708250</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.975%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298735.1/ 34]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>5,698</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,619,054,388</TD><TD ALIGN=RIGHT>2,534,335,866</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>84,718,522</TD><TD ALIGN=RIGHT>% 45.18</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ovis_aries/Oar_v3.1/ Sheep]</TD><TH ALIGN=CENTER>142X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>100079507</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.352%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www. | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317765.1/ 35]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>77,021</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2,635,848,900</TD><TD ALIGN=RIGHT>2,495,939,845</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>139,909,055</TD><TD ALIGN=RIGHT>% 43.55</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Capra_hircus/CHIR_1.0/ Domestic goat]</TD><TH ALIGN=CENTER>86.64X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>92306894</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.257%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 36]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>34</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,484,532,062</TD><TD ALIGN=RIGHT>2,428,790,173</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>55,741,889</TD><TD ALIGN=RIGHT>% 40.97</TD> | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val= | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Horse]</TD><TH ALIGN=CENTER>6.8X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>91571448</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>55.459%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000283155.1/ 37]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>3,087</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2,464,367,180</TD><TD ALIGN=RIGHT>2,366,858,012</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>97,509,168</TD><TD ALIGN=RIGHT>% 38.80</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ceratotherium_simum/CerSimSim1.0/ White rhinoceros]</TD><TH ALIGN=CENTER>91X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>26277727</TH> | ||
< | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>56.633%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ 38]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8]</TH> | ||
<TH ALIGN=RIGHT>267,625</TH> | <TH ALIGN=RIGHT>267,625</TH> | ||
<TD ALIGN=RIGHT>2,641,342,258</TD><TD ALIGN=RIGHT>2,599,700,169</TD> | <TD ALIGN=RIGHT>2,641,342,258</TD><TD ALIGN=RIGHT>2,599,700,169</TD> | ||
Line 305: | Line 377: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ Cat]</TD><TH ALIGN=CENTER>20X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ Cat]</TD><TH ALIGN=CENTER>20X</TH> | ||
<TH ALIGN=CENTER>142431058</TH> | <TH ALIGN=CENTER>142431058</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>51.684%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/85 39]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>3,268</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,410,976,875</TD><TD ALIGN=RIGHT>2,392,715,236</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>18,261,639</TD><TD ALIGN=RIGHT>% 43.01</TD> | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val= | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Dog]</TD><TH ALIGN=CENTER>7.6X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>63241923</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>50.395%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1 40]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]</TH> | ||
<TH ALIGN=RIGHT>7,741</TH> | <TH ALIGN=RIGHT>7,741</TH> | ||
<TD ALIGN=RIGHT>2,410,758,013</TD><TD ALIGN=RIGHT>2,277,906,570</TD> | <TD ALIGN=RIGHT>2,410,758,013</TD><TD ALIGN=RIGHT>2,277,906,570</TD> | ||
Line 323: | Line 395: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mustela_putorius/MusPutFur1.0/ Ferret ]</TD><TH ALIGN=CENTER>162X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mustela_putorius/MusPutFur1.0/ Ferret ]</TD><TH ALIGN=CENTER>162X</TH> | ||
<TH ALIGN=CENTER>9335154</TH> | <TH ALIGN=CENTER>9335154</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>49.631%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 41]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>81,467</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,299,509,015</TD><TD ALIGN=RIGHT>2,245,312,831</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>54,196,184</TD><TD ALIGN=RIGHT>% 38.96</TD> | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val= | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Panda]</TD><TH ALIGN=CENTER>73X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>1281781</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>48.226%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ 42]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1]</TH> | ||
<TH ALIGN=RIGHT>3,892</TH> | |||
<TD ALIGN=RIGHT>2,400,133,628</TD><TD ALIGN=RIGHT>2,300,235,509</TD> | |||
<TD ALIGN=RIGHT>99,898,119</TD><TD ALIGN=RIGHT>% 40.52</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Odobenus_rosmarus/Oros_1.0/ Pacific walrus]</TD><TH ALIGN=CENTER>200X</TH> | |||
<TH ALIGN=CENTER>2616778</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>52.193%</TD> | |||
<TH ALIGN=RIGHT>3, | |||
<TD ALIGN=RIGHT>2, | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=CENTER>[ | |||
<TH ALIGN=CENTER> | |||
<TH ALIGN=CENTER> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ 43]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1]</TH> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ | |||
<TH ALIGN=RIGHT>16,711</TH> | <TH ALIGN=RIGHT>16,711</TH> | ||
<TD ALIGN=RIGHT>3,156,902,762</TD><TD ALIGN=RIGHT>2,223,164,129</TD> | <TD ALIGN=RIGHT>3,156,902,762</TD><TD ALIGN=RIGHT>2,223,164,129</TD> | ||
Line 368: | Line 422: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Leptonychotes_weddellii/LepWed1.0/ Weddell seal]</TD><TH ALIGN=CENTER>82X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Leptonychotes_weddellii/LepWed1.0/ Weddell seal]</TD><TH ALIGN=CENTER>82X</TH> | ||
<TH ALIGN=CENTER>904031</TH> | <TH ALIGN=CENTER>904031</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>51.073%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 44]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1]</TH> | |||
<TH ALIGN=RIGHT>65,597</TH> | |||
<TD ALIGN=RIGHT>1,985,958,707</TD><TD ALIGN=RIGHT>1,944,625,202</TD> | |||
<TD ALIGN=RIGHT>41,333,505</TD><TD ALIGN=RIGHT>% 32.56</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pteropus_alecto/ASM32557v1/ Black flying-fox]</TD><TH ALIGN=CENTER>110X</TH> | |||
<TH ALIGN=CENTER>15954802</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>48.281%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 45]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH> | |||
<TH ALIGN=RIGHT>96,944</TH> | |||
<TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD> | |||
<TD ALIGN=RIGHT>156,639,750</TD><TD ALIGN=RIGHT>% 31.75</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Megabat]</TD><TH ALIGN=CENTER>2X</TH> | |||
<TH ALIGN=CENTER>124060</TH> | |||
<TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>43.924%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 46]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>6,788</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,026,627,185</TD><TD ALIGN=RIGHT>1,811,378,799</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>215,248,386</TD><TD ALIGN=RIGHT>% 24.11</TD> | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Eptesicus_fuscus/EptFus1.0/ Big brown bat]</TD><TH ALIGN=CENTER>84X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>13454942</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>39.123%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ 47]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1]</TH> | ||
<TH ALIGN=RIGHT>101,769</TH> | <TH ALIGN=RIGHT>101,769</TH> | ||
<TD ALIGN=RIGHT>2,059,799,708</TD><TD ALIGN=RIGHT>1,878,461,987</TD> | <TD ALIGN=RIGHT>2,059,799,708</TD><TD ALIGN=RIGHT>1,878,461,987</TD> | ||
Line 386: | Line 458: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Myotis_davidii/ASM32734v1/ David's myotis (bat)]</TD><TH ALIGN=CENTER>110X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Myotis_davidii/ASM32734v1/ David's myotis (bat)]</TD><TH ALIGN=CENTER>110X</TH> | ||
<TH ALIGN=CENTER>3454484</TH> | <TH ALIGN=CENTER>3454484</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>38.713%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/614 48]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>11,654</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,034,575,300</TD><TD ALIGN=RIGHT>1,966,419,868</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>68,155,432</TD><TD ALIGN=RIGHT>% 33.71</TD> | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val= | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Microbat]</TD><TH ALIGN=CENTER>2.18X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>4293315</TH> | ||
<TH ALIGN=CENTER> | <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>38.591%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296755.1/ 49]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]</TH> | |||
<TH ALIGN=RIGHT>5,803</TH> | |||
<TD ALIGN=RIGHT>2,715,720,925</TD><TD ALIGN=RIGHT>2,333,073,535</TD> | |||
<TD ALIGN=RIGHT>382,647,390</TD><TD ALIGN=RIGHT>% 45.60</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Erinaceus_europaeus/EriEur2.0/ Hedgehog]</TD><TH ALIGN=CENTER>79X</TH> | |||
<TH ALIGN=CENTER>3264618</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.488%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000181275.2/ 50]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>12,845</TH> | ||
<TD ALIGN=RIGHT>2, | <TD ALIGN=RIGHT>2,423,158,183</TD><TD ALIGN=RIGHT>2,192,103,426</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>231,054,757</TD><TD ALIGN=RIGHT>% 32.76</TD> | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Sorex_araneus/SorAra2.0/ Shrew]</TD><TH ALIGN=CENTER>120X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>22794405</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>26.905%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260355.1/ 51]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,038</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1,769,657,897</TD><TD ALIGN=RIGHT>1,682,542,007</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>87,115,890</TD><TD ALIGN=RIGHT>% 18.21</TD> | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Condylura_cristata/ConCri1.0/ Star-nosed mole]</TD><TH ALIGN=CENTER>113.1X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>55520359</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>35.911%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www. | <TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 52]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,353</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>3,196,760,833</TD><TD ALIGN=RIGHT>3,118,565,340</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>78,195,493</TD><TD ALIGN=RIGHT>% 47.63</TD> | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val= | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Elephant]</TD><TH ALIGN=CENTER>7X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>46401353</TH> | ||
< | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.214%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ 53]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1]</TH> | ||
<TH ALIGN=RIGHT>8,768</TH> | <TH ALIGN=RIGHT>8,768</TH> | ||
<TD ALIGN=RIGHT>3,843,982,861</TD><TD ALIGN=RIGHT>3,315,871,847</TD> | <TD ALIGN=RIGHT>3,843,982,861</TD><TD ALIGN=RIGHT>3,315,871,847</TD> | ||
Line 431: | Line 512: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Elephantulus_edwardii/EleEdw1.0/ Cape elephant shrew]</TD><TH ALIGN=CENTER>62X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Elephantulus_edwardii/EleEdw1.0/ Cape elephant shrew]</TD><TH ALIGN=CENTER>62X</TH> | ||
<TH ALIGN=CENTER>15011382</TH> | <TH ALIGN=CENTER>15011382</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>26.839%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10467 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10467 54]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH> | ||
<TH ALIGN=RIGHT>6,323</TH> | <TH ALIGN=RIGHT>6,323</TH> | ||
<TD ALIGN=RIGHT>3,103,808,406</TD><TD ALIGN=RIGHT>2,769,099,677</TD> | <TD ALIGN=RIGHT>3,103,808,406</TD><TD ALIGN=RIGHT>2,769,099,677</TD> | ||
Line 440: | Line 521: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Manatee]</TD><TH ALIGN=CENTER>150X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Manatee]</TD><TH ALIGN=CENTER>150X</TH> | ||
<TH ALIGN=CENTER>14442683</TH> | <TH ALIGN=CENTER>14442683</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.346%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 55]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>20,500</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>4,210,110,458</TD><TD ALIGN=RIGHT>3,363,564,316</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>846,546,142</TD><TD ALIGN=RIGHT>% 20.11</TD> | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chrysochloris_asiatica/ChrAsi1.0/ Cape golden mole]</TD><TH ALIGN=CENTER>66X</TH> | |||
<TH ALIGN=CENTER>13470186</TH> | |||
<TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>33.314%</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/ | |||
<TH ALIGN=CENTER> | |||
<TH ALIGN=CENTER> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ 56]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2]</TH> | ||
<TH ALIGN=RIGHT>8,402</TH> | <TH ALIGN=RIGHT>8,402</TH> | ||
<TD ALIGN=RIGHT>2,947,024,286</TD><TD ALIGN=RIGHT>2,605,196,361</TD> | <TD ALIGN=RIGHT>2,947,024,286</TD><TD ALIGN=RIGHT>2,605,196,361</TD> | ||
Line 503: | Line 539: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Echinops_telfairi/EchTel2.0/ Tenrec]</TD><TH ALIGN=CENTER>78X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Echinops_telfairi/EchTel2.0/ Tenrec]</TD><TH ALIGN=CENTER>78X</TH> | ||
<TH ALIGN=CENTER>45764842</TH> | <TH ALIGN=CENTER>45764842</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>29.310%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298275.1/ 57]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>22,509</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>4,444,080,527</TD><TD ALIGN=RIGHT>3,415,340,621</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1,028,739,906</TD><TD ALIGN=RIGHT>% 31.09</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orycteropus_afer/OryAfe1.0/ Aardvark]</TD><TH ALIGN=CENTER>44X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>7875832</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>40.563%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/12594 58]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH> | ||
<TH ALIGN=RIGHT>46,559</TH> | |||
<TD ALIGN=RIGHT>3,631,522,711</TD><TD ALIGN=RIGHT>3,299,882,028</TD> | |||
<TD ALIGN=RIGHT>331,640,683</TD><TD ALIGN=RIGHT>% 49.28</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Armadillo]</TD><TH ALIGN=CENTER>6X</TH> | |||
<TH ALIGN=CENTER>1687935</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.349%</TD> | |||
<TH ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val= | |||
<TH ALIGN=CENTER> | |||
< | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/mammals/opossum | <TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/mammals/opossum 59]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH> | ||
<TH ALIGN=RIGHT>11</TH> | <TH ALIGN=RIGHT>11</TH> | ||
<TD ALIGN=RIGHT>3,605,631,728</TD><TD ALIGN=RIGHT>3,501,660,299</TD> | <TD ALIGN=RIGHT>3,605,631,728</TD><TD ALIGN=RIGHT>3,501,660,299</TD> | ||
Line 578: | Line 569: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/3066 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/3066 60]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH> | ||
<TH ALIGN=RIGHT>35,974</TH> | <TH ALIGN=RIGHT>35,974</TH> | ||
<TD ALIGN=RIGHT>3,174,693,010</TD><TD ALIGN=RIGHT>2,931,539,702</TD> | <TD ALIGN=RIGHT>3,174,693,010</TD><TD ALIGN=RIGHT>2,931,539,702</TD> | ||
Line 587: | Line 578: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/233 61]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>277,711</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>3,075,184,024</TD><TD ALIGN=RIGHT>2,536,076,954</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>539,107,070</TD><TD ALIGN=RIGHT>% 47.39</TD> | ||
<TD ALIGN=CENTER | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Wallaby]</TD><TH ALIGN=CENTER>2X</TH> | ||
<TH ALIGN=CENTER>36602</TH> | |||
<TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT>6.378%</TD> | |||
<TH ALIGN=CENTER> | |||
< | |||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/110 62]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/110 | |||
<TH ALIGN=RIGHT>201,523</TH> | <TH ALIGN=RIGHT>201,523</TH> | ||
<TD ALIGN=RIGHT>1,996,811,212</TD><TD ALIGN=RIGHT>1,842,235,522</TD> | <TD ALIGN=RIGHT>1,996,811,212</TD><TD ALIGN=RIGHT>1,842,235,522</TD> | ||
Line 632: | Line 596: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ 63]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1 colLiv1]</TH> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ | |||
<TH ALIGN=RIGHT>14,923</TH> | <TH ALIGN=RIGHT>14,923</TH> | ||
<TD ALIGN=RIGHT>1,107,989,085</TD><TD ALIGN=RIGHT>1,086,925,875</TD> | <TD ALIGN=RIGHT>1,107,989,085</TD><TD ALIGN=RIGHT>1,086,925,875</TD> | ||
Line 650: | Line 605: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ 64]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1]</TH> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ | |||
<TH ALIGN=RIGHT>5,863</TH> | <TH ALIGN=RIGHT>5,863</TH> | ||
<TD ALIGN=RIGHT>1,174,811,715</TD><TD ALIGN=RIGHT>1,150,993,769</TD> | <TD ALIGN=RIGHT>1,174,811,715</TD><TD ALIGN=RIGHT>1,150,993,769</TD> | ||
Line 695: | Line 614: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ 65]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1]</TH> | ||
<TH ALIGN=RIGHT>7,021</TH> | <TH ALIGN=RIGHT>7,021</TH> | ||
<TD ALIGN=RIGHT>1,171,973,431</TD><TD ALIGN=RIGHT>1,153,404,348</TD> | <TD ALIGN=RIGHT>1,171,973,431</TD><TD ALIGN=RIGHT>1,153,404,348</TD> | ||
Line 704: | Line 623: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ 66]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ficAlb2 ficAlb2]</TH> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ | |||
<TH ALIGN=RIGHT>21,428</TH> | <TH ALIGN=RIGHT>21,428</TH> | ||
<TD ALIGN=RIGHT>1,118,343,587</TD><TD ALIGN=RIGHT>1,102,323,882</TD> | <TD ALIGN=RIGHT>1,118,343,587</TD><TD ALIGN=RIGHT>1,102,323,882</TD> | ||
Line 746: | Line 629: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ficedula_albicollis/FicAlb1.5/ Collared flycatcher]</TD><TH ALIGN=CENTER>60X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ficedula_albicollis/FicAlb1.5/ Collared flycatcher]</TD><TH ALIGN=CENTER>60X</TH> | ||
<TH ALIGN=CENTER>64724594</TH> | <TH ALIGN=CENTER>64724594</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.822%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ 67]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1 zonAlb1]</TH> | ||
<TH ALIGN=RIGHT>6,018</TH> | <TH ALIGN=RIGHT>6,018</TH> | ||
<TD ALIGN=RIGHT>1,052,600,561</TD><TD ALIGN=RIGHT>1,006,293,510</TD> | <TD ALIGN=RIGHT>1,052,600,561</TD><TD ALIGN=RIGHT>1,006,293,510</TD> | ||
Line 755: | Line 638: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Zonotrichia_albicollis/ASM38545v1/ White-throated sparrow]</TD><TH ALIGN=CENTER>63X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Zonotrichia_albicollis/ASM38545v1/ White-throated sparrow]</TD><TH ALIGN=CENTER>63X</TH> | ||
<TH ALIGN=CENTER>4866725</TH> | <TH ALIGN=CENTER>4866725</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.494%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/156703 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/156703 68]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]</TH> | ||
<TH ALIGN=RIGHT>27,239</TH> | <TH ALIGN=RIGHT>27,239</TH> | ||
<TD ALIGN=RIGHT>1,065,292,181</TD><TD ALIGN=RIGHT>1,041,286,029</TD> | <TD ALIGN=RIGHT>1,065,292,181</TD><TD ALIGN=RIGHT>1,041,286,029</TD> | ||
Line 764: | Line 647: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKZB01 Medium ground finch]</TD><TH ALIGN=CENTER>115X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKZB01 Medium ground finch]</TD><TH ALIGN=CENTER>115X</TH> | ||
<TH ALIGN=CENTER>5255844</TH> | <TH ALIGN=CENTER>5255844</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.445%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000151805.2/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000151805.2/ 69]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]</TH> | ||
<TH ALIGN=RIGHT>37,096</TH> | <TH ALIGN=RIGHT>37,096</TH> | ||
<TD ALIGN=RIGHT>1,232,135,591</TD><TD ALIGN=RIGHT>1,222,864,691</TD> | <TD ALIGN=RIGHT>1,232,135,591</TD><TD ALIGN=RIGHT>1,222,864,691</TD> | ||
Line 773: | Line 656: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Taeniopygia_guttata/Taeniopygia_guttata-3.2.4/ Zebra finch]</TD><TH ALIGN=CENTER>5.5X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Taeniopygia_guttata/Taeniopygia_guttata-3.2.4/ Zebra finch]</TD><TH ALIGN=CENTER>5.5X</TH> | ||
<TH ALIGN=CENTER>62374962</TH> | <TH ALIGN=CENTER>62374962</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>5.893%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331425.1/ 70]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1]</TH> | ||
<TH ALIGN=RIGHT>1, | <TH ALIGN=RIGHT>5,406</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1,042,997,632</TD><TD ALIGN=RIGHT>1,030,030,436</TD> | ||
<TD ALIGN=RIGHT>76, | <TD ALIGN=RIGHT>12,967,196</TD><TD ALIGN=RIGHT>% 20.21</TD> | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pseudopodoces_humilis/PseHum1.0/ Tibetan ground jay]</TD><TH ALIGN=CENTER>96.25X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>16337386</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>5.146%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10765 71]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH> | ||
<TH ALIGN=RIGHT>25,212</TH> | |||
<TD ALIGN=RIGHT>1,117,373,619</TD><TD ALIGN=RIGHT>1,086,614,815</TD> | |||
<TD ALIGN=RIGHT>30,758,804</TD><TD ALIGN=RIGHT>% 19.62</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Budgerigar]</TD><TH ALIGN=CENTER>7X</TH> | |||
<TH ALIGN=CENTER>10614383</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.474%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ 72]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1 amaVit1]</TH> | |||
<TH ALIGN=RIGHT>182,974</TH> | |||
<TD ALIGN=RIGHT>1,175,404,042</TD><TD ALIGN=RIGHT>1,128,255,752</TD> | |||
<TD ALIGN=RIGHT>47,148,290</TD><TD ALIGN=RIGHT>% 18.36</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Amazona_vittata/AV1/ Parrot]</TD><TH ALIGN=CENTER>24X</TH> | |||
<TH ALIGN=CENTER>19239</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.186%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ 73]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=araMac1 araMac1]</TH> | |||
<TH ALIGN=RIGHT>192,790</TH> | |||
<TD ALIGN=RIGHT>1,204,700,227</TD><TD ALIGN=RIGHT>997,522,769</TD> | |||
<TD ALIGN=RIGHT>207,177,458</TD><TD ALIGN=RIGHT>% 16.49</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ara_macao/SMACv1.1/ Scarlet Macaw]</TD><TH ALIGN=CENTER>26X</TH> | |||
<TH ALIGN=CENTER>15974</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.787%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000355885.1/ 74]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anaPla1 anaPla1]</TH> | |||
<TH ALIGN=RIGHT>78,488</TH> | |||
<TD ALIGN=RIGHT>1,105,052,351</TD><TD ALIGN=RIGHT>1,069,972,754</TD> | |||
<TD ALIGN=RIGHT>35,079,597</TD><TD ALIGN=RIGHT>% 20.21</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anas_platyrhynchos/BGI_duck_1.0/ Mallard duck]</TD><TH ALIGN=CENTER>60X</TH> | |||
<TH ALIGN=CENTER>1233631</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.268%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/111 75]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH> | |||
<TH ALIGN=RIGHT>15,932</TH> | |||
<TD ALIGN=RIGHT>1,046,932,099</TD><TD ALIGN=RIGHT>1,032,854,810</TD> | |||
<TD ALIGN=RIGHT>14,077,289</TD><TD ALIGN=RIGHT>% 20.41</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Chicken]</TD><TH ALIGN=CENTER>12X</TH> | |||
<TH ALIGN=CENTER>90216835</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.696%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 76]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH> | |||
<TH ALIGN=RIGHT>5,891</TH> | |||
<TD ALIGN=RIGHT>1,061,817,101</TD><TD ALIGN=RIGHT>935,922,386</TD> | |||
<TD ALIGN=RIGHT>125,894,715</TD><TD ALIGN=RIGHT>% 6.60</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH> | |||
<TH ALIGN=CENTER>74864452</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.328%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000281125.1/ 77]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1]</TH> | |||
<TH ALIGN=RIGHT>14,645</TH> | |||
<TD ALIGN=RIGHT>2,174,259,888</TD><TD ALIGN=RIGHT>2,128,720,123</TD> | |||
<TD ALIGN=RIGHT>45,539,765</TD><TD ALIGN=RIGHT>% 37.18</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Alligator_mississippiensis/allMis0.2/ American alligator]</TD><TH ALIGN=CENTER>68X</TH> | |||
<TH ALIGN=CENTER>508966</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>7.561%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000344595.1/ 78]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1 cheMyd1]</TH> | |||
<TH ALIGN=RIGHT>140,023</TH> | |||
<TD ALIGN=RIGHT>2,208,410,377</TD><TD ALIGN=RIGHT>2,110,381,997</TD> | |||
<TD ALIGN=RIGHT>98,028,380</TD><TD ALIGN=RIGHT>% 29.65</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Chelonia_mydas/CheMyd_1.0/ Green seaturtle]</TD><TH ALIGN=CENTER>110X</TH> | |||
<TH ALIGN=CENTER>3864108</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>6.296%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241765.2 79]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic2 chrPic2]</TH> | |||
<TH ALIGN=RIGHT>78,595</TH> | |||
<TD ALIGN=RIGHT>2,365,766,562</TD><TD ALIGN=RIGHT>2,173,204,089</TD> | |||
<TD ALIGN=RIGHT>192,562,473</TD><TD ALIGN=RIGHT>% 31.52</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY02 Painted turtle]</TD><TH ALIGN=CENTER>15X</TH> | |||
<TH ALIGN=CENTER>7072151</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>6.708%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000230535.1/ 80]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelSin1 pelSin1]</TH> | |||
<TH ALIGN=RIGHT>19,904</TH> | |||
<TD ALIGN=RIGHT>2,202,483,752</TD><TD ALIGN=RIGHT>2,106,639,384</TD> | |||
<TD ALIGN=RIGHT>95,844,368</TD><TD ALIGN=RIGHT>% 33.82</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pelodiscus_sinensis/PelSin_1.0/ Chinese softshell turtle]</TD><TH ALIGN=CENTER>105X</TH> | |||
<TH ALIGN=CENTER>3350749</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>5.716%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ 81]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apaSpi1 apaSpi1]</TH> | |||
<TH ALIGN=RIGHT>286,620</TH> | |||
<TD ALIGN=RIGHT>1,931,078,847</TD><TD ALIGN=RIGHT>1,877,982,184</TD> | |||
<TD ALIGN=RIGHT>53,096,663</TD><TD ALIGN=RIGHT>% 29.87</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Apalone_spinifera/ASM38561v1/ Spiny softshell turtle]</TD><TH ALIGN=CENTER>33.4X</TH> | |||
<TH ALIGN=CENTER>2306994</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.611%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 82]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH> | |||
<TH ALIGN=RIGHT>6,457</TH> | |||
<TD ALIGN=RIGHT>1,799,143,587</TD><TD ALIGN=RIGHT>1,701,353,767</TD> | |||
<TD ALIGN=RIGHT>97,789,820</TD><TD ALIGN=RIGHT>% 41.98</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Lizard]</TD><TH ALIGN=CENTER>7.1X</TH> | |||
<TH ALIGN=CENTER>150641573</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.593%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ 83]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7]</TH> | |||
<TH ALIGN=RIGHT>7,728</TH> | <TH ALIGN=RIGHT>7,728</TH> | ||
<TD ALIGN=RIGHT>1,437,530,879</TD><TD ALIGN=RIGHT>1,365,936,747</TD> | <TD ALIGN=RIGHT>1,437,530,879</TD><TD ALIGN=RIGHT>1,365,936,747</TD> | ||
Line 791: | Line 782: | ||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/Xtropicalis_v7/ X. tropicalis]</TD><TH ALIGN=CENTER>7.44X</TH> | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/Xtropicalis_v7/ X. tropicalis]</TD><TH ALIGN=CENTER>7.44X</TH> | ||
<TH ALIGN=CENTER>124127367</TH> | <TH ALIGN=CENTER>124127367</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.811%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/56111 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/56111 84]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH> | ||
<TH ALIGN=RIGHT>22,819</TH> | <TH ALIGN=RIGHT>22,819</TH> | ||
<TD ALIGN=RIGHT>2,860,591,921</TD><TD ALIGN=RIGHT>2,183,592,768</TD> | <TD ALIGN=RIGHT>2,860,591,921</TD><TD ALIGN=RIGHT>2,183,592,768</TD> | ||
Line 800: | Line 791: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Coelacanth]</TD><TH ALIGN=CENTER>77.5X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Coelacanth]</TD><TH ALIGN=CENTER>77.5X</TH> | ||
<TH ALIGN=CENTER>924513</TH> | <TH ALIGN=CENTER>924513</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.873%</TD> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2. | |||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 85]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH> | |||
<TR><TH ALIGN=RIGHT>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html | |||
<TH ALIGN=RIGHT>27</TH> | <TH ALIGN=RIGHT>27</TH> | ||
<TD ALIGN=RIGHT>358,618,246</TD><TD ALIGN=RIGHT>302,314,788</TD> | <TD ALIGN=RIGHT>358,618,246</TD><TD ALIGN=RIGHT>302,314,788</TD> | ||
Line 839: | Line 803: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www. | <TR><TH ALIGN=RIGHT>[http://www.fugu-sg.org/ 86]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>6,835</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>391,484,715</TD><TD ALIGN=RIGHT>350,961,831</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>40,522,884</TD><TD ALIGN=RIGHT>% 19.01</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Fugu]</TD><TH ALIGN=CENTER>8.5X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>11516971</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1. | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.784%</TD> | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ 87]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1]</TH> | ||
<TH ALIGN=RIGHT>34,223</TH> | <TH ALIGN=RIGHT>34,223</TH> | ||
<TD ALIGN=RIGHT>377,992,166</TD><TD ALIGN=RIGHT>314,409,984</TD> | <TD ALIGN=RIGHT>377,992,166</TD><TD ALIGN=RIGHT>314,409,984</TD> | ||
Line 857: | Line 821: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/59571 88]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH> | ||
<TH ALIGN=RIGHT>5,678</TH> | |||
<TD ALIGN=RIGHT>927,696,114</TD><TD ALIGN=RIGHT>816,084,674</TD> | |||
<TD ALIGN=RIGHT>111,611,440</TD><TD ALIGN=RIGHT>% 25.51</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Nile tilapia]</TD><TH ALIGN=CENTER>269X</TH> | |||
<TH ALIGN=CENTER>27159252</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.868%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ 89]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1]</TH> | |||
<TH ALIGN=RIGHT>9,083</TH> | |||
<TD ALIGN=RIGHT>847,883,811</TD><TD ALIGN=RIGHT>685,897,279</TD> | |||
<TD ALIGN=RIGHT>161,986,532</TD><TD ALIGN=RIGHT>% 24.12</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Neolamprologus_brichardi/NeoBri1.0/ Princess of Burundi]</TD><TH ALIGN=CENTER>171X</TH> | |||
<TH ALIGN=CENTER>4430025</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.767%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ 90]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1]</TH> | |||
<TH ALIGN=RIGHT>7,994</TH> | <TH ALIGN=RIGHT>7,994</TH> | ||
<TD ALIGN=RIGHT>831,398,301</TD><TD ALIGN=RIGHT>698,936,397</TD> | <TD ALIGN=RIGHT>831,398,301</TD><TD ALIGN=RIGHT>698,936,397</TD> | ||
Line 866: | Line 848: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ 91]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1]</TH> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ | |||
<TH ALIGN=RIGHT>3,725</TH> | <TH ALIGN=RIGHT>3,725</TH> | ||
<TD ALIGN=RIGHT>849,595,388</TD><TD ALIGN=RIGHT>713,527,863</TD> | <TD ALIGN=RIGHT>849,595,388</TD><TD ALIGN=RIGHT>713,527,863</TD> | ||
Line 911: | Line 857: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ 92]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1]</TH> | ||
<TH ALIGN=RIGHT>7,233</TH> | <TH ALIGN=RIGHT>7,233</TH> | ||
<TD ALIGN=RIGHT>830,129,318</TD><TD ALIGN=RIGHT>698,757,151</TD> | <TD ALIGN=RIGHT>830,129,318</TD><TD ALIGN=RIGHT>698,757,151</TD> | ||
Line 920: | Line 866: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://dolphin.lab.nig.ac.jp/medaka/index.php | <TR><TH ALIGN=RIGHT>[http://dolphin.lab.nig.ac.jp/medaka/index.php 93]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH> | ||
<TH ALIGN=RIGHT>7,189</TH> | <TH ALIGN=RIGHT>7,189</TH> | ||
<TD ALIGN=RIGHT>869,000,216</TD><TD ALIGN=RIGHT>700,386,597</TD> | <TD ALIGN=RIGHT>869,000,216</TD><TD ALIGN=RIGHT>700,386,597</TD> | ||
Line 929: | Line 875: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ 94]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1 xipMac1]</TH> | ||
<TH ALIGN=RIGHT>20,632</TH> | <TH ALIGN=RIGHT>20,632</TH> | ||
<TD ALIGN=RIGHT>729,664,433</TD><TD ALIGN=RIGHT>652,811,251</TD> | <TD ALIGN=RIGHT>729,664,433</TD><TD ALIGN=RIGHT>652,811,251</TD> | ||
Line 936: | Line 882: | ||
<TH ALIGN=CENTER>1303070</TH> | <TH ALIGN=CENTER>1303070</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.898%</TD> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.898%</TD> | ||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 95]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH> | |||
<TH ALIGN=RIGHT>23</TH> | |||
<TD ALIGN=RIGHT>463,354,448</TD><TD ALIGN=RIGHT>446,627,861</TD> | |||
<TD ALIGN=RIGHT>16,726,587</TD><TD ALIGN=RIGHT>% 2.58</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Stickleback]</TD><TH ALIGN=CENTER>6X</TH> | |||
<TH ALIGN=CENTER>20083130</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.080%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2661 96]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH> | |||
<TH ALIGN=RIGHT>427,428</TH> | |||
<TD ALIGN=RIGHT>824,327,835</TD><TD ALIGN=RIGHT>608,038,555</TD> | |||
<TD ALIGN=RIGHT>216,289,280</TD><TD ALIGN=RIGHT>% 31.25</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Atlantic cod]</TD><TH ALIGN=CENTER>40X</TH> | |||
<TH ALIGN=CENTER>393166</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.660%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.5 97]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10]</TH> | |||
<TH ALIGN=RIGHT>1,061</TH> | |||
<TD ALIGN=RIGHT>1,371,719,383</TD><TD ALIGN=RIGHT>1,369,631,918</TD> | |||
<TD ALIGN=RIGHT>2,087,465</TD><TD ALIGN=RIGHT>% 52.32</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ01 Zebrafish]</TD><TH ALIGN=CENTER>30X</TH> | |||
<TH ALIGN=CENTER>53345113</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.357%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000372685.1/ 98]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=astMex1 astMex1]</TH> | |||
<TH ALIGN=RIGHT>10,736</TH> | |||
<TD ALIGN=RIGHT>1,191,259,254</TD><TD ALIGN=RIGHT>964,251,514</TD> | |||
<TD ALIGN=RIGHT>227,007,740</TD><TD ALIGN=RIGHT>% 39.11</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Astyanax_mexicanus/Astyanax_mexicanus-1.0.2/ Mexican tetra (cavefish)]</TD><TH ALIGN=CENTER>70X</TH> | |||
<TH ALIGN=CENTER>1775308</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.225%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000242695.1/ 99]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1]</TH> | |||
<TH ALIGN=RIGHT>1,925</TH> | |||
<TD ALIGN=RIGHT>945,874,548</TD><TD ALIGN=RIGHT>869,414,359</TD> | |||
<TD ALIGN=RIGHT>76,460,189</TD><TD ALIGN=RIGHT>% 24.85</TD> | |||
<TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Lepisosteus_oculatus/LepOcu1/ Spotted gar]</TD><TH ALIGN=CENTER>677.5X</TH> | |||
<TH ALIGN=CENTER>50348508</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.511%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/12880 100]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2]</TH> | |||
<TH ALIGN=RIGHT>25,006</TH> | |||
<TD ALIGN=RIGHT>885,550,958</TD><TD ALIGN=RIGHT>647,368,134</TD> | |||
<TD ALIGN=RIGHT>238,182,824</TD><TD ALIGN=RIGHT>% 42.47</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFG01 Lamprey]</TD><TH ALIGN=CENTER>5.0X</TH> | |||
<TH ALIGN=CENTER>184619</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.265%</TD> | |||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
</TABLE> | </TABLE> |
Latest revision as of 19:56, 14 May 2015
see also
- Human 100-way Hg38 100-way conservation alignment
- Human 100-way Hg38 100-way conservation lastz parameters
- all other UCSC Multiple Alignments
statistics collected from UCSC 2bit files
- The external link in the first column goes to the FTP location where the genome sequence was obtained
- The external links from the UCSC database name go to the UCSC genome-test browser for that genome
- N bases == unknown bases in the assembly marked by "N"
- non-N bases == called bases in the assembly
- total size == all bases in assembly, N and non-N
- The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
- The common name external links go to information pages for this genome
- The coverage numbers are taken directly from information README files from the sequencing center
- The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
do not edit, automatically generated table
order count/ ftp src |
ucsc db name/ genome-test |
chrom count |
total size |
non-N bases |
N base count |
% masked | common name/ src info |
coverage | N50 chrom.sizes |
alignment type | % of hg38 matched (chainLink table) |
chain minScore |
chain linearGap |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | hg38 | 455 | 3,209,286,105 | 3,049,315,783 | 159,970,322 | % 52.10 | Human | 20X | 145138636 | N/A | N/A | 3000 | medium |
02 | panTro4 | 24,129 | 3,309,577,922 | 2,902,338,967 | 407,238,955 | % 51.29 | Chimp | 6X | 143986469 | SyntenicNet | 93.112% | 5000 | medium |
03 | gorGor3 | 46,823 | 3,029,553,646 | 2,822,760,080 | 206,793,566 | % 48.80 | Gorilla | 2.1X | 145327772 | RecipBest | 88.005% | 3000 | medium |
04 | ponAbe2 | 55 | 3,446,771,396 | 3,093,543,172 | 353,228,224 | % 50.89 | Orangutan | 6X | 135191526 | SyntenicNet | 89.187% | 5000 | medium |
05 | nomLeu3 | 17,492 | 2,962,077,449 | 2,756,609,047 | 205,468,402 | % 51.14 | Gibbon | 5.6X | 117381234 | SyntenicNet | 86.379% | 3000 | medium |
06 | rheMac3 | 34,103 | 2,969,988,180 | 2,639,145,830 | 330,842,350 | % 48.54 | Rhesus | 50X | 150158102 | SyntenicNet | 80.828% | 5000 | medium |
07 | macFas5 | 7,601 | 2,946,843,737 | 2,803,866,385 | 142,977,352 | % 50.11 | Crab-eating macaque | 68X | 152835861 | SyntenicNet | 85.675% | 3000 | medium |
08 | papAnu2 | 63,250 | 2,948,380,710 | 2,893,250,291 | 55,130,419 | % 38.95 | Baboon | 85X | 139646187 | RecipBest | 84.179% | 3000 | medium |
09 | chlSab2 | 2,004 | 2,789,656,328 | 2,752,000,999 | 37,655,329 | % 48.77 | Green monkey | 95X | 101219884 | SyntenicNet | 84.393% | 5000 | medium |
10 | calJac3 | 14,205 | 2,914,958,544 | 2,752,505,800 | 162,452,744 | % 47.71 | Marmoset | 6X | 132174527 | SyntenicNet | 71.709% | 3000 | medium |
11 | saiBol1 | 2,685 | 2,608,572,064 | 2,477,131,095 | 131,440,969 | % 46.69 | Squirrel monkey | 80X | 18744880 | SyntenicNet | 70.565% | 3000 | medium |
12 | otoGar3 | 7,793 | 2,519,724,550 | 2,359,530,453 | 160,194,097 | % 39.51 | Bushbaby | 137X | 13852661 | SyntenicNet | 53.196% | 3000 | medium |
13 | tupChi1 | 50,750 | 2,846,580,235 | 2,706,389,135 | 140,191,100 | % 40.02 | Chinese tree shrew | 80X | 3670124 | SyntenicNet | 45.256% | 3000 | medium |
14 | speTri2 | 12,483 | 2,478,393,770 | 2,311,060,300 | 167,333,470 | % 36.27 | Squirrel | 495X | 8192786 | SyntenicNet | 48.283% | 3000 | medium |
15 | jacJac1 | 10,896 | 2,835,242,767 | 2,470,259,869 | 364,982,898 | % 37.29 | Lesser Egyptian jerboa | 78X | 22080993 | SyntenicNet | 34.153% | 3000 | medium |
16 | micOch1 | 6,335 | 2,287,340,943 | 2,104,321,675 | 183,019,268 | % 23.89 | Prairie vole | 94X | 61813736 | SyntenicNet | 31.489% | 3000 | medium |
17 | criGri1 | 52,711 | 2,360,146,428 | 2,301,325,917 | 58,820,511 | % 27.06 | Chinese hamster | 130X | 1558295 | SyntenicNet | 33.169% | 3000 | medium |
18 | mesAur1 | 21,484 | 2,504,925,039 | 2,076,176,254 | 428,748,785 | % 25.70 | Golden hamster | 115X | 12753307 | SyntenicNet | 30.803% | 3000 | medium |
19 | mm10 | 66 | 2,730,871,774 | 2,652,783,500 | 78,088,274 | % 45.18 | Mouse | 20X | 130694993 | SyntenicNet | 31.653% | 3000 | medium |
20 | rn6 | 953 | 2,870,182,909 | 2,729,860,805 | 140,322,104 | % 43.31 | Rat | 10X | 145729302 | SyntenicNet | 31.077% | 3000 | medium |
21 | hetGla2 | 4,229 | 2,618,204,639 | 2,314,771,103 | 303,433,536 | % 32.31 | Naked mole-rat | 90X | 20532749 | SyntenicNet | 46.248% | 3000 | medium |
22 | cavPor3 | 3,144 | 2,723,219,641 | 2,663,369,733 | 59,849,908 | % 27.53 | Guinea pig | 6.76X | 27942054 | SyntenicNet | 42.371% | 3000 | medium |
23 | chiLan1 | 2,838 | 2,390,852,391 | 2,284,276,400 | 106,575,991 | % 30.82 | Chinchilla | 87X | 21893125 | SyntenicNet | 45.665% | 3000 | medium |
24 | octDeg1 | 7,134 | 2,995,882,938 | 2,526,254,692 | 469,628,246 | % 26.47 | Brush-tailed rat | 80X | 12091372 | SyntenicNet | 40.238% | 3000 | medium |
25 | oryCun2 | 3,242 | 2,737,490,501 | 2,604,023,284 | 133,467,217 | % 43.74 | Rabbit | 6.51X | 111795807 | SyntenicNet | 42.911% | 3000 | medium |
26 | ochPri3 | 10,420 | 2,229,835,716 | 1,943,987,870 | 285,847,846 | % 29.53 | Pika | 103X | 26863993 | SyntenicNet | 33.618% | 3000 | medium |
27 | susScr3 | 4,583 | 2,808,525,991 | 2,518,987,191 | 289,538,800 | % 44.30 | Pig | 24X | 148491826 | RecipBest | 44.676% | 3000 | medium |
28 | vicPac2 | 276,611 | 2,172,177,994 | 2,078,582,856 | 93,595,138 | % 35.40 | Alpaca | 22X | 7263804 | SyntenicNet | 48.909% | 3000 | medium |
29 | camFer1 | 13,334 | 2,009,194,609 | 1,985,416,433 | 23,778,176 | % 33.32 | Bactrian camel | 30X | 2005940 | SyntenicNet | 49.095% | 3000 | medium |
30 | turTru2 | 240,901 | 2,551,996,573 | 2,332,402,443 | 219,594,130 | % 43.56 | Dolphin | 3.5X | 116261 | RecipBest | 49.728% | 3000 | medium |
31 | orcOrc1 | 1,668 | 2,372,919,877 | 2,249,582,112 | 123,337,765 | % 42.47 | Killer whale | 200X | 12735091 | SyntenicNet | 50.709% | 3000 | medium |
32 | panHod1 | 15,059 | 2,696,886,330 | 2,507,986,438 | 188,899,892 | % 42.51 | Tibetan antelope | 67X | 2772860 | SyntenicNet | 45.619% | 3000 | medium |
33 | bosTau8 | 3,179 | 2,670,044,500 | 2,649,304,231 | 20,740,269 | % 48.69 | Cow | 9X | 105708250 | SyntenicNet | 45.975% | 3000 | medium |
34 | oviAri3 | 5,698 | 2,619,054,388 | 2,534,335,866 | 84,718,522 | % 45.18 | Sheep | 142X | 100079507 | SyntenicNet | 45.352% | 3000 | medium |
35 | capHir1 | 77,021 | 2,635,848,900 | 2,495,939,845 | 139,909,055 | % 43.55 | Domestic goat | 86.64X | 92306894 | SyntenicNet | 45.257% | 3000 | medium |
36 | equCab2 | 34 | 2,484,532,062 | 2,428,790,173 | 55,741,889 | % 40.97 | Horse | 6.8X | 91571448 | SyntenicNet | 55.459% | 3000 | medium |
37 | cerSim1 | 3,087 | 2,464,367,180 | 2,366,858,012 | 97,509,168 | % 38.80 | White rhinoceros | 91X | 26277727 | SyntenicNet | 56.633% | 3000 | medium |
38 | felCat8 | 267,625 | 2,641,342,258 | 2,599,700,169 | 41,642,089 | % 44.41 | Cat | 20X | 142431058 | SyntenicNet | 51.684% | 3000 | medium |
39 | canFam3 | 3,268 | 2,410,976,875 | 2,392,715,236 | 18,261,639 | % 43.01 | Dog | 7.6X | 63241923 | SyntenicNet | 50.395% | 3000 | medium |
40 | musFur1 | 7,741 | 2,410,758,013 | 2,277,906,570 | 132,851,443 | % 38.98 | Ferret | 162X | 9335154 | SyntenicNet | 49.631% | 3000 | medium |
41 | ailMel1 | 81,467 | 2,299,509,015 | 2,245,312,831 | 54,196,184 | % 38.96 | Panda | 73X | 1281781 | SyntenicNet | 48.226% | 3000 | medium |
42 | odoRosDiv1 | 3,892 | 2,400,133,628 | 2,300,235,509 | 99,898,119 | % 40.52 | Pacific walrus | 200X | 2616778 | SyntenicNet | 52.193% | 3000 | medium |
43 | lepWed1 | 16,711 | 3,156,902,762 | 2,223,164,129 | 933,738,633 | % 40.09 | Weddell seal | 82X | 904031 | RecipBest | 51.073% | 3000 | medium |
44 | pteAle1 | 65,597 | 1,985,958,707 | 1,944,625,202 | 41,333,505 | % 32.56 | Black flying-fox | 110X | 15954802 | SyntenicNet | 48.281% | 3000 | medium |
45 | pteVam1 | 96,944 | 1,996,076,410 | 1,839,436,660 | 156,639,750 | % 31.75 | Megabat | 2X | 124060 | RecipBest | 43.924% | 3000 | medium |
46 | eptFus1 | 6,788 | 2,026,627,185 | 1,811,378,799 | 215,248,386 | % 24.11 | Big brown bat | 84X | 13454942 | SyntenicNet | 39.123% | 3000 | medium |
47 | myoDav1 | 101,769 | 2,059,799,708 | 1,878,461,987 | 181,337,721 | % 23.35 | David's myotis (bat) | 110X | 3454484 | SyntenicNet | 38.713% | 3000 | medium |
48 | myoLuc2 | 11,654 | 2,034,575,300 | 1,966,419,868 | 68,155,432 | % 33.71 | Microbat | 2.18X | 4293315 | SyntenicNet | 38.591% | 3000 | medium |
49 | eriEur2 | 5,803 | 2,715,720,925 | 2,333,073,535 | 382,647,390 | % 45.60 | Hedgehog | 79X | 3264618 | SyntenicNet | 25.488% | 3000 | medium |
50 | sorAra2 | 12,845 | 2,423,158,183 | 2,192,103,426 | 231,054,757 | % 32.76 | Shrew | 120X | 22794405 | SyntenicNet | 26.905% | 3000 | medium |
51 | conCri1 | 2,038 | 1,769,657,897 | 1,682,542,007 | 87,115,890 | % 18.21 | Star-nosed mole | 113.1X | 55520359 | SyntenicNet | 35.911% | 3000 | medium |
52 | loxAfr3 | 2,353 | 3,196,760,833 | 3,118,565,340 | 78,195,493 | % 47.63 | Elephant | 7X | 46401353 | SyntenicNet | 45.214% | 3000 | medium |
53 | eleEdw1 | 8,768 | 3,843,982,861 | 3,315,871,847 | 528,111,014 | % 49.11 | Cape elephant shrew | 62X | 15011382 | SyntenicNet | 26.839% | 3000 | medium |
54 | triMan1 | 6,323 | 3,103,808,406 | 2,769,099,677 | 334,708,729 | % 36.24 | Manatee | 150X | 14442683 | SyntenicNet | 45.346% | 3000 | medium |
55 | chrAsi1 | 20,500 | 4,210,110,458 | 3,363,564,316 | 846,546,142 | % 20.11 | Cape golden mole | 66X | 13470186 | RecipBest | 33.314% | 3000 | medium |
56 | echTel2 | 8,402 | 2,947,024,286 | 2,605,196,361 | 341,827,925 | % 28.26 | Tenrec | 78X | 45764842 | SyntenicNet | 29.310% | 3000 | medium |
57 | oryAfe1 | 22,509 | 4,444,080,527 | 3,415,340,621 | 1,028,739,906 | % 31.09 | Aardvark | 44X | 7875832 | RecipBest | 40.563% | 3000 | medium |
58 | dasNov3 | 46,559 | 3,631,522,711 | 3,299,882,028 | 331,640,683 | % 49.28 | Armadillo | 6X | 1687935 | SyntenicNet | 45.349% | 3000 | medium |
59 | monDom5 | 11 | 3,605,631,728 | 3,501,660,299 | 103,971,429 | % 55.95 | Opossum | 6.8X | 527952102 | Net | 14.370% | 5000 | loose |
60 | sarHar1 | 35,974 | 3,174,693,010 | 2,931,539,702 | 243,153,308 | % 39.66 | Tasmanian devil | 85X | 1847106 | Net | 12.754% | 5000 | loose |
61 | macEug2 | 277,711 | 3,075,184,024 | 2,536,076,954 | 539,107,070 | % 47.39 | Wallaby | 2X | 36602 | Net | 6.378% | 5000 | loose |
62 | ornAna1 | 201,523 | 1,996,811,212 | 1,842,235,522 | 154,575,690 | % 47.89 | Platypus | 6X | 991605 | Net | 7.769% | 5000 | loose |
63 | colLiv1 | 14,923 | 1,107,989,085 | 1,086,925,875 | 21,063,210 | % 19.83 | Rock pigeon | 60X | 3148738 | Net | 4.712% | 5000 | loose |
64 | falChe1 | 5,863 | 1,174,811,715 | 1,150,993,769 | 23,817,946 | % 18.62 | Saker falcon | 147X | 4154532 | Net | 4.828% | 5000 | loose |
65 | falPer1 | 7,021 | 1,171,973,431 | 1,153,404,348 | 18,569,083 | % 18.69 | Peregrine falcon | 137.6X | 3935757 | Net | 4.926% | 5000 | loose |
66 | ficAlb2 | 21,428 | 1,118,343,587 | 1,102,323,882 | 16,019,705 | % 24.04 | Collared flycatcher | 60X | 64724594 | Net | 4.822% | 5000 | loose |
67 | zonAlb1 | 6,018 | 1,052,600,561 | 1,006,293,510 | 46,307,051 | % 20.03 | White-throated sparrow | 63X | 4866725 | Net | 4.494% | 5000 | loose |
68 | geoFor1 | 27,239 | 1,065,292,181 | 1,041,286,029 | 24,006,152 | % 19.99 | Medium ground finch | 115X | 5255844 | Net | 4.445% | 5000 | loose |
69 | taeGut2 | 37,096 | 1,232,135,591 | 1,222,864,691 | 9,270,900 | % 8.11 | Zebra finch | 5.5X | 62374962 | Net | 5.893% | 5000 | loose |
70 | pseHum1 | 5,406 | 1,042,997,632 | 1,030,030,436 | 12,967,196 | % 20.21 | Tibetan ground jay | 96.25X | 16337386 | Net | 5.146% | 5000 | loose |
71 | melUnd1 | 25,212 | 1,117,373,619 | 1,086,614,815 | 30,758,804 | % 19.62 | Budgerigar | 7X | 10614383 | Net | 4.474% | 5000 | loose |
72 | amaVit1 | 182,974 | 1,175,404,042 | 1,128,255,752 | 47,148,290 | % 18.36 | Parrot | 24X | 19239 | Net | 4.186% | 5000 | loose |
73 | araMac1 | 192,790 | 1,204,700,227 | 997,522,769 | 207,177,458 | % 16.49 | Scarlet Macaw | 26X | 15974 | Net | 3.787% | 5000 | loose |
74 | anaPla1 | 78,488 | 1,105,052,351 | 1,069,972,754 | 35,079,597 | % 20.21 | Mallard duck | 60X | 1233631 | Net | 4.268% | 5000 | loose |
75 | galGal4 | 15,932 | 1,046,932,099 | 1,032,854,810 | 14,077,289 | % 20.41 | Chicken | 12X | 90216835 | Net | 4.696% | 5000 | loose |
76 | melGal1 | 5,891 | 1,061,817,101 | 935,922,386 | 125,894,715 | % 6.60 | Turkey | 5X | 74864452 | Net | 4.328% | 5000 | loose |
77 | allMis1 | 14,645 | 2,174,259,888 | 2,128,720,123 | 45,539,765 | % 37.18 | American alligator | 68X | 508966 | Net | 7.561% | 5000 | loose |
78 | cheMyd1 | 140,023 | 2,208,410,377 | 2,110,381,997 | 98,028,380 | % 29.65 | Green seaturtle | 110X | 3864108 | Net | 6.296% | 5000 | loose |
79 | chrPic2 | 78,595 | 2,365,766,562 | 2,173,204,089 | 192,562,473 | % 31.52 | Painted turtle | 15X | 7072151 | Net | 6.708% | 5000 | loose |
80 | pelSin1 | 19,904 | 2,202,483,752 | 2,106,639,384 | 95,844,368 | % 33.82 | Chinese softshell turtle | 105X | 3350749 | Net | 5.716% | 5000 | loose |
81 | apaSpi1 | 286,620 | 1,931,078,847 | 1,877,982,184 | 53,096,663 | % 29.87 | Spiny softshell turtle | 33.4X | 2306994 | Net | 4.611% | 5000 | loose |
82 | anoCar2 | 6,457 | 1,799,143,587 | 1,701,353,767 | 97,789,820 | % 41.98 | Lizard | 7.1X | 150641573 | Net | 3.593% | 5000 | loose |
83 | xenTro7 | 7,728 | 1,437,530,879 | 1,365,936,747 | 71,594,132 | % 33.98 | X. tropicalis | 7.44X | 124127367 | Net | 3.811% | 5000 | loose |
84 | latCha1 | 22,819 | 2,860,591,921 | 2,183,592,768 | 676,999,153 | % 45.68 | Coelacanth | 77.5X | 924513 | Net | 2.873% | 5000 | loose |
85 | tetNig2 | 27 | 358,618,246 | 302,314,788 | 56,303,458 | % 20.27 | Tetraodon | 7.9X | 13390619 | Net | 1.743% | 5000 | loose |
86 | fr3 | 6,835 | 391,484,715 | 350,961,831 | 40,522,884 | % 19.01 | Fugu | 8.5X | 11516971 | Net | 1.784% | 5000 | loose |
87 | takFla1 | 34,223 | 377,992,166 | 314,409,984 | 63,582,182 | % 17.77 | Yellowbelly pufferfish | 131X | 315240 | Net | 1.548% | 5000 | loose |
88 | oreNil2 | 5,678 | 927,696,114 | 816,084,674 | 111,611,440 | % 25.51 | Nile tilapia | 269X | 27159252 | Net | 1.868% | 5000 | loose |
89 | neoBri1 | 9,083 | 847,883,811 | 685,897,279 | 161,986,532 | % 24.12 | Princess of Burundi | 171X | 4430025 | Net | 1.767% | 5000 | loose |
90 | hapBur1 | 7,994 | 831,398,301 | 698,936,397 | 132,461,904 | % 24.10 | Burton's mouthbreeder | 131X | 1194190 | Net | 1.783% | 5000 | loose |
91 | mayZeb1 | 3,725 | 849,595,388 | 713,527,863 | 136,067,525 | % 25.04 | Zebra Mbuna | 129.7X | 3702874 | Net | 1.805% | 5000 | loose |
92 | punNye1 | 7,233 | 830,129,318 | 698,757,151 | 131,372,167 | % 24.56 | Pundamilia nyererei | 126X | 2525540 | Net | 1.787% | 5000 | loose |
93 | oryLat2 | 7,189 | 869,000,216 | 700,386,597 | 168,613,619 | % 33.09 | Medaka | 10.6X | 29908082 | Net | 2.002% | 5000 | loose |
94 | xipMac1 | 20,632 | 729,664,433 | 652,811,251 | 76,853,182 | % 26.62 | Southern platyfish | 19.6X | 1303070 | Net | 1.898% | 5000 | loose |
95 | gasAcu1 | 23 | 463,354,448 | 446,627,861 | 16,726,587 | % 2.58 | Stickleback | 6X | 20083130 | Net | 2.080% | 5000 | loose |
96 | gadMor1 | 427,428 | 824,327,835 | 608,038,555 | 216,289,280 | % 31.25 | Atlantic cod | 40X | 393166 | Net | 1.660% | 5000 | loose |
97 | danRer10 | 1,061 | 1,371,719,383 | 1,369,631,918 | 2,087,465 | % 52.32 | Zebrafish | 30X | 53345113 | Net | 3.357% | 5000 | loose |
98 | astMex1 | 10,736 | 1,191,259,254 | 964,251,514 | 227,007,740 | % 39.11 | Mexican tetra (cavefish) | 70X | 1775308 | Net | 2.225% | 5000 | loose |
99 | lepOcu1 | 1,925 | 945,874,548 | 869,414,359 | 76,460,189 | % 24.85 | Spotted gar | 677.5X | 50348508 | Net | 2.511% | 5000 | loose |
100 | petMar2 | 25,006 | 885,550,958 | 647,368,134 | 238,182,824 | % 42.47 | Lamprey | 5.0X | 184619 | Net | 1.265% | 5000 | loose |