Ce11 26-way conservation alignment: Difference between revisions

Revision as of 20:32, 27 August 2015

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to assembly sequence	UCSC db name/ genome-preview browser	Scientific name/ assembly information	Common name	assembly date (version)	source version	Repeat Masker	Window Masker	chain on ce11	% of ce11 matched (chainLink table)
01	ce11	Caenorhabditis elegans	C. elegans	Aug. 2014 (WBcel245/ce11)	Washington University School of Medicine GSC and Sanger Institute WBcel245	2015-06-10	2015-06-10	N/A	N/A
02	caeJap4	Caenorhabditis japonica	C. japonica	Aug. 2010 (WUSTL 7.0.1/caeJap4)	Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1)	2011-06-03	2011-06-03	2015-06-25	27.709%
03	caePb3	Caenorhabditis brenneri	C. brenneri	Nov. 2010 (C. brenneri 6.0.1b/caePb3)	The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2)	2011-06-08	2011-06-08	2015-07-01	40.638%
04	caeRem4	Caenorhabditis remanei	C. remanei	Jul. 2007 (WS220/caeRem4)	Washington University School of Medicine GSC C. remanei 15.0.1	2011-05-25	2011-05-25	2015-07-02	41.715%
05	caeSp111	Caenorhabditis tropicalis	C. tropicalis	Nov. 2010 (WUSTL 3.0.1/caeSp111)	Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1)	2011-05-31	2011-05-31	2015-07-07	37.870%
06	cb4	Caenorhabditis briggsae	C. briggsae	Apr. 2011 (WS225/cb4)	Washington University School of Medicine GSC and Sanger Institute cb4	2011-05-24	2011-05-24	2015-07-01	39.384%
07	caeAng2	Caenorhabditis angaria	C. angaria	Mar. 2012 (WS245/caeAng2)	Division of Biology, California Institute of Technology	2015-06-30	2015-06-30	2015-06-30	17.682%
08	caeSp51	Caenorhabditis sp5 ju800	C. sp. 5 ju800	Jan. 2012 (WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51)	University of Edinburgh Caenorhabditis sp. 5 genome project	2015-07-08	2015-07-08	2015-07-09	40.332%
09	hetBac1	Heterorhabditis bacteriophora	H. bacteriophora/m31e	Aug. 2011 (WS229/H. bacteriophora 7.0/hetBac1)	Washington University Genome Sequencing Center Heterorhabditis_bacteriophora-7.0	2015-07-14	2015-07-15	2015-07-23	10.486%
10	panRed1	Panagrellus redivivus	Microworm	Feb. 2013 (Pred3/panRed1)	California Institute of Technology P. redivivus genome project	2015-07-01	2015-07-01	2015-07-01	6.585%
11	strRat2	Strongyloides ratti	Threadworm	Sep. 2014 (S. ratti ED321/strRat2)	Wellcome Trust Sanger Institute S. ratti genome project	2015-07-08	2015-07-08	2015-07-09	5.669%
12	ascSuu1	Ascaris suum	Pig roundworm	Sep. 2012 (WS229/AscSuum_1.0/ascSuu1)	Beijing Genomics Institute	2015-07-13	2015-07-14	2015-07-23	5.722%
13	haeCon2	Haemonchus contortus	Barber pole worm	Jul. 2013 (WormBase WS239/haeCon2)	Sanger Institute	2015-07-02	2015-07-06	2015-07-07	8.936%
14	ancCey1	Ancylostoma ceylanicum	A. ceylanicum	Mar. 2014 (WS243/Acey_2013.11.30.genDNA/ancCey1)	Cornell University Ancylostoma ceylanicum genome project	2015-07-15	2015-07-15	2015-07-23	9.736%
15	necAme1	Necator americanus	N. americanus	Dec. 2013 (WS242/N_americanus_v1/necAme1)	The Genome Institute at Washington University	2015-07-15	2015-07-15	2015-07-23	8.902%
16	priExs1	Pristionchus exspectatus	P. exspectatus	Mar. 2014 (WS243/P_exspectatus_v1/priExs1)	Max Planck Institite for Developmental Genetics	2015-07-14	2015-07-15	2015-07-23	6.222%
17	priPac3	Pristionchus pacificus	P. pacificus	Aug. 2014 (P_pacificus-v2/priPac3)	Max Planck Institute for Developmental Biology P. pacificus genome project	2015-07-01	2015-07-01	2015-07-01	6.308%
18	burXyl1	Bursaphelenchus xylophilus	Pine wood nematode	Nov. 2011 (WS229/B. xylophilus Ka4C1/burXyl1)	Wellcome Trust Sanger Institute B. xylophilus genome project	2015-07-09	2015-07-09	2015-07-09	6.291%
19	bruMal2	Brugia malayi	Filarial worm	May. 2014 (WS244/B_malayi-3.1/bruMal2)	University of Pittsburgh B. malayi genome project	2015-08-11	2015-08-11	2015-08-11	5.065%
20	melHap1	Meloidogyne hapla	M. hapla	Sep. 2008 (M. hapla VW9 WS210/melHap1)	The Center for the Biology of Nematode Parasitism, N.C. State	2010-09-21	2010-09-21	2015-06-26	3.916%
21	melInc2	Meloidogyne incognita	M. incognita	Feb. 2008 (M. incognita WS245/PRJEA28837/melInc2)	Sanger and Genoscope	2015-06-30	2015-06-30	2015-06-30	3.516%
22	oncVol1	Onchocerca volvulus	O. volvulus	Nov. 2013 (WS241/O_volvulus_Cameroon_v3/oncVol1)	Wellcome Trust Sanger Institute O. volvulus genome project	2015-08-10	2015-08-10	2015-08-10	5.193%
23	triSpi1	Trichinella spiralis	Trichinella	Jan. 2011 (WS225/Trichinella_spiralis-3.7.1/triSpi1)	WashU School of Medicine T. spiralis genome project	2015-07-10	2015-07-15	2015-07-23	2.848%
24	triSui1	Trichuris suis	Whipworm	Jul. 2014 (WS243/T. suis DCEP-RM93M male/triSui1)	University of Melboure T. suis (male) genome project	2015-07-10	2015-07-15	2015-07-23	2.917%
25	dirImm1	Dirofilaria immitis	Dog heartworm	Sep. 2013 (WS240/D. immitis v2.2/dirImm1)	Edinburgh University D. immitis genome project	2015-07-09	2015-07-09	2015-07-23	5.005%
26	loaLoa1	Loa loa	Eye worm	Jul. 2012 (WS235/L_loa_Cameroon_isolate/loaLoa1)	Broad Institute L. loa genome project	2015-07-10	2015-07-15	2015-07-23	5.056%

@@ Line 25: / Line 25: @@
 </TR>
 <TR>
-   <TH>[url TBD 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/invertebrates/Caenorhabditis_elegans/WBcel235/ Caenorhabditis<BR>elegans]</TD><TD>C.&nbsp;elegans</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/554278 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_elegans/all_assembly_versions/GCA_000002985.3_WBcel235/ Caenorhabditis<BR>elegans]</TD><TD>C.&nbsp;elegans</TD>
    <TD>Aug.&nbsp;2014&nbsp;(WBcel245/ce11)</TD>
    <TD>Washington University School of Medicine GSC and Sanger Institute WBcel245</TD>
@@ Line 32: / Line 32: @@
    <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
 </TR><TR>
-   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/invertebrates/Caenorhabditis_japonica/C_japonica-7.0.1/ 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap4 caeJap4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABLE03 Caenorhabditis<BR>japonica]</TD><TD>C.&nbsp;japonica</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000147155.1 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap4 caeJap4]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_japonica/all_assembly_versions/GCA_000147155.1_C_japonica-7.0.1/ Caenorhabditis<BR>japonica]</TD><TD>C.&nbsp;japonica</TD>
    <TD>Aug.&nbsp;2010&nbsp;(WUSTL&nbsp;7.0.1/caeJap4)</TD>
    <TD>Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1)</TD>
@@ Line 39: / Line 39: @@
    <TD>2015-06-25</TD><TD ALIGN=RIGHT>27.709%</TD>
 </TR><TR>
-   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/invertebrates/Caenorhabditis_brenneri/C_brenneri-6.0.1b/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb3 caePb3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABEG02 Caenorhabditis<BR>brenneri]</TD><TD>C.&nbsp;brenneri</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000143925.2 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb3 caePb3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_brenneri/all_assembly_versions/GCA_000143925.2_C_brenneri-6.0.1b/ Caenorhabditis<BR>brenneri]</TD><TD>C.&nbsp;brenneri</TD>
    <TD>Nov.&nbsp;2010&nbsp;(C.&nbsp;brenneri&nbsp;6.0.1b/caePb3)</TD>
    <TD>The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2)</TD>
@@ Line 53: / Line 53: @@
    <TD>2015-07-02</TD><TD ALIGN=RIGHT>41.715%</TD>
 </TR><TR>
-   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/invertebrates/Caenorhabditis_sp_9_MAF_2010/Caenorhabditis_sp9_JU1422-3.0.1/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp111 caeSp111]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEKS01 Caenorhabditis<BR>tropicalis]</TD><TD>C.&nbsp;tropicalis</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000186765.1 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp111 caeSp111]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_sp._11_KK-2011/all_assembly_versions/GCA_000186765.1_Caenorhabditis_sp11_JU1373-3.0.1/ Caenorhabditis<BR>tropicalis]</TD><TD>C.&nbsp;tropicalis</TD>
    <TD>Nov.&nbsp;2010&nbsp;(WUSTL&nbsp;3.0.1/caeSp111)</TD>
    <TD>Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1)</TD>
@@ Line 67: / Line 67: @@
    <TD>2015-07-01</TD><TD ALIGN=RIGHT>39.384%</TD>
 </TR><TR>
-   <TH>[url TBD 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng2 caeAng2]</TH><TD>[src TBD Caenorhabditis<BR>angaria]</TD><TD>C.&nbsp;angaria</TD>
+   <TH>[http://www.wormbase.org/species/c_angaria 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng2 caeAng2]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA51225/ Caenorhabditis<BR>angaria]</TD><TD>C.&nbsp;angaria</TD>
    <TD>Mar.&nbsp;2012&nbsp;(WS245/caeAng2)</TD>
    <TD>Division of Biology, California Institute of Technology</TD>
@@ Line 74: / Line 74: @@
    <TD>2015-06-30</TD><TD ALIGN=RIGHT>17.682%</TD>
 </TR><TR>
-   <TH>[url TBD 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp51 caeSp51]</TH><TD>[src TBD Caenorhabditis<BR>sp5<BR>ju800]</TD><TD>C.&nbsp;sp.&nbsp;5&nbsp;ju800</TD>
+   <TH>[http://www.wormbase.org/species/c_sp5 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp51 caeSp51]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA194557/ Caenorhabditis<BR>sp5<BR>ju800]</TD><TD>C.&nbsp;sp.&nbsp;5&nbsp;ju800</TD>
    <TD>Jan.&nbsp;2012&nbsp;(WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51)</TD>
    <TD>University of Edinburgh Caenorhabditis sp. 5 genome project</TD>
@@ Line 81: / Line 81: @@
    <TD>2015-07-09</TD><TD ALIGN=RIGHT>40.332%</TD>
 </TR><TR>
-   <TH>[url TBD 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1]</TH><TD>[src TBD Heterorhabditis<BR>bacteriophora]</TD><TD>H.&nbsp;bacteriophora/m31e</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000223415.1/ 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Heterorhabditis_bacteriophora/all_assembly_versions/GCA_000223415.1_Heterorhabditis_bacteriophora-7.0/ Heterorhabditis<BR>bacteriophora]</TD><TD>H.&nbsp;bacteriophora/m31e</TD>
    <TD>Aug.&nbsp;2011&nbsp;(WS229/H.&nbsp;bacteriophora&nbsp;7.0/hetBac1)</TD>
    <TD>Washington University Genome Sequencing Center Heterorhabditis_bacteriophora-7.0</TD>
@@ Line 88: / Line 88: @@
    <TD>2015-07-23</TD><TD ALIGN=RIGHT>10.486%</TD>
 </TR><TR>
-   <TH>[url TBD 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1]</TH><TD>[src TBD Panagrellus<BR>redivivus]</TD><TD>Microworm</TD>
+   <TH>[http://www.wormbase.org/species/p_redivivus 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA186477/ Panagrellus<BR>redivivus]</TD><TD>Microworm</TD>
    <TD>Feb.&nbsp;2013&nbsp;(Pred3/panRed1)</TD>
    <TD>California Institute of Technology P. redivivus genome project</TD>
@@ Line 95: / Line 95: @@
    <TD>2015-07-01</TD><TD ALIGN=RIGHT>6.585%</TD>
 </TR><TR>
-   <TH>[url TBD 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2]</TH><TD>[src TBD Strongyloides<BR>ratti]</TD><TD>Threadworm</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_001040885.1/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Strongyloides_ratti/all_assembly_versions/GCA_001040885.1_S_ratti_ED321/ Strongyloides<BR>ratti]</TD><TD>Threadworm</TD>
    <TD>Sep.&nbsp;2014&nbsp;(S.&nbsp;ratti&nbsp;ED321/strRat2)</TD>
    <TD>Wellcome Trust Sanger Institute S. ratti genome project</TD>
@@ Line 102: / Line 102: @@
    <TD>2015-07-09</TD><TD ALIGN=RIGHT>5.669%</TD>
 </TR><TR>
-   <TH>[url TBD 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ascSuu1 ascSuu1]</TH><TD>[src TBD Ascaris<BR>suum]</TD><TD>Pig&nbsp;roundworm</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298755.1 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ascSuu1 ascSuu1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Ascaris_suum/all_assembly_versions/GCA_000298755.1_AscSuum_1.0/ Ascaris<BR>suum]</TD><TD>Pig&nbsp;roundworm</TD>
    <TD>Sep.&nbsp;2012&nbsp;(WS229/AscSuum_1.0/ascSuu1)</TD>
    <TD>Beijing Genomics Institute</TD>
@@ Line 109: / Line 109: @@
    <TD>2015-07-23</TD><TD ALIGN=RIGHT>5.722%</TD>
 </TR><TR>
-   <TH>[url TBD 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2]</TH><TD>[src TBD Haemonchus<BR>contortus]</TD><TD>Barber&nbsp;pole&nbsp;worm</TD>
+   <TH>[http://www.wormbase.org/species/h_contortus 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB506/ Haemonchus<BR>contortus]</TD><TD>Barber&nbsp;pole&nbsp;worm</TD>
    <TD>Jul.&nbsp;2013&nbsp;(WormBase&nbsp;WS239/haeCon2)</TD>
    <TD>Sanger Institute</TD>
@@ Line 116: / Line 116: @@
    <TD>2015-07-07</TD><TD ALIGN=RIGHT>8.936%</TD>
 </TR><TR>
-   <TH>[url TBD 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ancCey1 ancCey1]</TH><TD>[src TBD Ancylostoma<BR>ceylanicum]</TD><TD>Hookworm</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000688135.1 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ancCey1 ancCey1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Ancylostoma_ceylanicum/all_assembly_versions/GCA_000688135.1_Acey_2013.11.30.genDNA/ Ancylostoma<BR>ceylanicum]</TD><TD>A.&nbsp;ceylanicum</TD>
    <TD>Mar.&nbsp;2014&nbsp;(WS243/Acey_2013.11.30.genDNA/ancCey1)</TD>
    <TD>Cornell University Ancylostoma ceylanicum genome project</TD>
@@ Line 123: / Line 123: @@
    <TD>2015-07-23</TD><TD ALIGN=RIGHT>9.736%</TD>
 </TR><TR>
-   <TH>[url TBD 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1]</TH><TD>[src TBD Necator<BR>americanus]</TD><TD>Hookworm</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCF_000507365.1 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Necator_americanus/all_assembly_versions/GCA_000507365.1_N_americanus_v1/ Necator<BR>americanus]</TD><TD>N.&nbsp;americanus</TD>
    <TD>Dec.&nbsp;2013&nbsp;(WS242/N_americanus_v1/necAme1)</TD>
    <TD>The Genome Institute at Washington University</TD>
@@ Line 130: / Line 130: @@
    <TD>2015-07-23</TD><TD ALIGN=RIGHT>8.902%</TD>
 </TR><TR>
-   <TH>[url TBD 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1]</TH><TD>[src TBD Pristionchus<BR>exspectatus]</TD><TD>P.&nbsp;exspectatus</TD>
+   <TH>[http://www.wormbase.org/species/p_exspectatus 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB6009/ Pristionchus<BR>exspectatus]</TD><TD>P.&nbsp;exspectatus</TD>
    <TD>Mar.&nbsp;2014&nbsp;(WS243/P_exspectatus_v1/priExs1)</TD>
    <TD>Max Planck Institite for Developmental Genetics</TD>
@@ Line 137: / Line 137: @@
    <TD>2015-07-23</TD><TD ALIGN=RIGHT>6.222%</TD>
 </TR><TR>
-   <TH>[url TBD 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3]</TH><TD>[src TBD Pristionchus<BR>pacificus]</TD><TD>P.&nbsp;pacificus</TD>
+   <TH>[http://www.wormbase.org/species/p_pacificus 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA12644/ Pristionchus<BR>pacificus]</TD><TD>P.&nbsp;pacificus</TD>
    <TD>Aug.&nbsp;2014&nbsp;(P_pacificus-v2/priPac3)</TD>
    <TD>Max Planck Institute for Developmental Biology P. pacificus genome project</TD>
@@ Line 144: / Line 144: @@
    <TD>2015-07-01</TD><TD ALIGN=RIGHT>6.308%</TD>
 </TR><TR>
-   <TH>[url TBD 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=burXyl1 burXyl1]</TH><TD>[src TBD Bursaphelenchus<BR>xylophilus]</TD><TD>Pine&nbsp;wood&nbsp;nematode</TD>
+   <TH>[http://www.wormbase.org/species/b_xylophilus 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=burXyl1 burXyl1]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEA64437/ Bursaphelenchus<BR>xylophilus]</TD><TD>Pine&nbsp;wood&nbsp;nematode</TD>
    <TD>Nov.&nbsp;2011&nbsp;(WS229/B.&nbsp;xylophilus&nbsp;Ka4C1/burXyl1)</TD>
    <TD>Wellcome Trust Sanger Institute B. xylophilus genome project</TD>
@@ Line 151: / Line 151: @@
    <TD>2015-07-09</TD><TD ALIGN=RIGHT>6.291%</TD>
 </TR><TR>
-   <TH>[url TBD 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal2 bruMal2]</TH><TD>[src TBD Brugia<BR>malayi]</TD><TD>Filarial&nbsp;worm</TD>
+   <TH>[http://www.wormbase.org/species/b_malayi 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal2 bruMal2]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA10729/ Brugia<BR>malayi]</TD><TD>Filarial&nbsp;worm</TD>
    <TD>May.&nbsp;2014&nbsp;(WS244/B_malayi-3.1/bruMal2)</TD>
    <TD>University of Pittsburgh B. malayi genome project</TD>
-   <TD ALIGN=RIGHT>2015-07-07</TD>
+   <TD ALIGN=RIGHT>2015-08-11</TD>
-   <TD ALIGN=RIGHT>2015-07-08</TD>
+   <TD ALIGN=RIGHT>2015-08-11</TD>
-   <TD>2015-07-08</TD><TD ALIGN=RIGHT>5.052%</TD>
+   <TD>2015-08-11</TD><TD ALIGN=RIGHT>5.065%</TD>
 </TR><TR>
-   <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/WS210/genomes/m_hapla/ 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1]</TH><TD>[src TBD Meloidogyne<BR>hapla]</TD><TD>Root&nbsp;knot</TD>
+   <TH>[http://www.wormbase.org/species/m_hapla 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/WS210/genomes/m_hapla/ Meloidogyne<BR>hapla]</TD><TD>M.&nbsp;hapla</TD>
    <TD>Sep.&nbsp;2008&nbsp;(M.&nbsp;hapla&nbsp;VW9&nbsp;WS210/melHap1)</TD>
    <TD>The Center for the Biology of Nematode Parasitism, N.C. State</TD>
@@ Line 165: / Line 165: @@
    <TD>2015-06-26</TD><TD ALIGN=RIGHT>3.916%</TD>
 </TR><TR>
-   <TH>[url TBD 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2]</TH><TD>[src TBD Meloidogyne<BR>incognita]</TD><TD>Root&nbsp;knot</TD>
+   <TH>[http://www.wormbase.org/species/m_incognita 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEA28837/ Meloidogyne<BR>incognita]</TD><TD>M.&nbsp;incognita</TD>
    <TD>Feb.&nbsp;2008&nbsp;(M.&nbsp;incognita&nbsp;WS245/PRJEA28837/melInc2)</TD>
    <TD>Sanger and Genoscope</TD>
@@ Line 172: / Line 172: @@
    <TD>2015-06-30</TD><TD ALIGN=RIGHT>3.516%</TD>
 </TR><TR>
-   <TH>[url TBD 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1]</TH><TD>[src TBD Onchocerca<BR>volvulus]</TD><TD>O.&nbsp;volvulus</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000499405.1 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Onchocerca_volvulus/all_assembly_versions/GCA_000499405.1_OVOC001/ Onchocerca<BR>volvulus]</TD><TD>O.&nbsp;volvulus</TD>
    <TD>Nov.&nbsp;2013&nbsp;(WS241/O_volvulus_Cameroon_v3/oncVol1)</TD>
    <TD>Wellcome Trust Sanger Institute O. volvulus genome project</TD>
-   <TD ALIGN=RIGHT>2015-07-09</TD>
+   <TD ALIGN=RIGHT>2015-08-10</TD>
-   <TD ALIGN=RIGHT>2015-07-09</TD>
+   <TD ALIGN=RIGHT>2015-08-10</TD>
-   <TD>2015-07-09</TD><TD ALIGN=RIGHT>5.182%</TD>
+   <TD>2015-08-10</TD><TD ALIGN=RIGHT>5.193%</TD>
 </TR><TR>
-   <TH>[url TBD 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1]</TH><TD>[src TBD Trichinella<BR>spiralis]</TD><TD>Trichinella</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCF_000181795.1 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Trichinella_spiralis/all_assembly_versions/GCA_000181795.2_Trichinella_spiralis-3.7.1/ Trichinella<BR>spiralis]</TD><TD>Trichinella</TD>
    <TD>Jan.&nbsp;2011&nbsp;(WS225/Trichinella_spiralis-3.7.1/triSpi1)</TD>
    <TD>WashU School of Medicine T. spiralis genome project</TD>
@@ Line 186: / Line 186: @@
    <TD>2015-07-23</TD><TD ALIGN=RIGHT>2.848%</TD>
 </TR><TR>
-   <TH>[url TBD 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1 triSui1]</TH><TD>[src TBD Trichuris<BR>suis]</TD><TD>Whipworm</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000701005.1 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1 triSui1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Trichuris_suis/all_assembly_versions/GCA_000701005.1_Tsuis_adult_male_v1.0/ Trichuris<BR>suis]</TD><TD>Whipworm</TD>
    <TD>Jul.&nbsp;2014&nbsp;(WS243/T.&nbsp;suis&nbsp;DCEP-RM93M&nbsp;male/triSui1)</TD>
    <TD>University of Melboure T. suis (male) genome project</TD>
@@ Line 193: / Line 193: @@
    <TD>2015-07-23</TD><TD ALIGN=RIGHT>2.917%</TD>
 </TR><TR>
-   <TH>[url TBD 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1]</TH><TD>[src TBD Dirofilaria<BR>immitis]</TD><TD>Dog&nbsp;heartworm</TD>
+   <TH>[http://www.wormbase.org/species/d_immitis 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB1797/ Dirofilaria<BR>immitis]</TD><TD>Dog&nbsp;heartworm</TD>
    <TD>Sep.&nbsp;2013&nbsp;(WS240/D.&nbsp;immitis&nbsp;v2.2/dirImm1)</TD>
    <TD>Edinburgh University D. immitis genome project</TD>
@@ Line 200: / Line 200: @@
    <TD>2015-07-23</TD><TD ALIGN=RIGHT>5.005%</TD>
 </TR><TR>
-   <TH>[url TBD 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1]</TH><TD>[src TBD Loa<BR>loa]</TD><TD>Eye&nbsp;worm</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000183805.3 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Loa_loa/all_assembly_versions/GCA_000183805.3_Loa_loa_V3.1/ Loa<BR>loa]</TD><TD>Eye&nbsp;worm</TD>
    <TD>Jul.&nbsp;2012&nbsp;(WS235/L_loa_Cameroon_isolate/loaLoa1)</TD>
    <TD>Broad Institute L. loa genome project</TD>

Ce11 26-way conservation alignment: Difference between revisions

Revision as of 20:32, 27 August 2015

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