Ce11 26-way conservation lastz parameters: Difference between revisions
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(add reference to pair-wise matrix) |
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<LI>C. elegans 26-way [[Ce11 26-way conservation alignment]]</LI> | <LI>C. elegans 26-way [[Ce11 26-way conservation alignment]]</LI> | ||
<LI>all other [[UCSC Multiple Alignments]]</LI> | <LI>all other [[UCSC Multiple Alignments]]</LI> | ||
<LI>see also: [[Ws245ChainNet|matrix]] of all pair-wise alignments | |||
</UL> | </UL> | ||
Latest revision as of 18:11, 3 September 2015
See Also
- C. elegans 26-way Ce11 26-way Genome size statistics
- C. elegans 26-way Ce11 26-way conservation alignment
- all other UCSC Multiple Alignments
- see also: matrix of all pair-wise alignments
| The default Q scoring matrix is: | |||||||||||||||||||||||||
O=400 E=30 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of ce11 matched (chainLink table) |
% of query matched (chainLinkCe11) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C. sp. 5 ju800 caeSp51 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-09 | 40.332% | 31.721% |
| C. brenneri caePb3 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-01 | 40.638% | 32.296% |
| C. remanei caeRem4 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-02 | 41.715% | 33.416% |
| C. briggsae cb4 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-01 | 39.384% | 36.204% |
| C. tropicalis caeSp111 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-07 | 37.870% | 47.362% |
| C. japonica caeJap4 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-06-25 | 27.709% | 19.533% |
| C. angaria caeAng2 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-06-30 | 17.682% | 20.987% |
| P. pacificus priPac3 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-01 | 6.308% | 4.534% |
| P. exspectatus priExs1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 6.222% | 4.321% |
| Pine wood nematode burXyl1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-09 | 6.291% | 8.293% |
| A. ceylanicum ancCey1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 9.736% | 3.237% |
| Barber pole worm haeCon2 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-07 | 8.936% | 3.405% |
| N. americanus necAme1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 8.902% | 4.115% |
| Microworm panRed1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-01 | 6.585% | 10.359% |
| H. bacteriophora/m31e hetBac1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 10.486% | 13.556% |
| Pig roundworm ascSuu1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 5.722% | 2.224% |
| Threadworm strRat2 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-09 | 5.669% | 11.848% |
| Trichinella triSpi1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 2.848% | 4.678% |
| Whipworm triSui1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 2.917% | 3.714% |
| M. incognita melInc2 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-06-30 | 3.516% | 5.539% |
| M. hapla melHap1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-06-26 | 3.916% | 6.840% |
| Filarial worm bruMal2 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-08-11 | 5.065% | 5.521% |
| O. volvulus oncVol1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-08-10 | 5.193% | 5.092% |
| Eye worm loaLoa1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 5.056% | 5.274% |
| Dog heartworm dirImm1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-07-23 | 5.005% | 5.474% |
