UCSC to RefSeq correspondence: Difference between revisions
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(updated as invertebrates roll in) |
(updated with ebola, 162 matches) |
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| Line 4: | Line 4: | ||
the other, and partial matches when one assembly is mostly | the other, and partial matches when one assembly is mostly | ||
identical to the other.</p> | identical to the other.</p> | ||
<p>The columns can be sorted. Click on the small arrow | |||
icon next to the column header name</p> | |||
<p>The external links go to: | <p>The external links go to: | ||
<ul> | <ul> | ||
| Line 1,089: | Line 1,091: | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000327385.1/ GCF_000327385.1_Helro1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000327385.1/ GCF_000327385.1_Helro1] | ||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Lottia_gigantea/all_assembly_versions/GCF_000327385.1_Helro1/ invertebrate] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Lottia_gigantea/all_assembly_versions/GCF_000327385.1_Helro1/ invertebrate] | ||
|- | |||
! 154 | |||
| pogBar0 | |||
| Pogonomyrmex barbatus | |||
| notFound | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000187915.1/ GCF_000187915.1_Pbar_UMD_V03] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Pogonomyrmex_barbatus/all_assembly_versions/GCF_000187915.1_Pbar_UMD_V03/ invertebrate] | |||
|- | |||
! 155 | |||
| solInv0 | |||
| Solenopsis invicta | |||
| notFound | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000188075.1/ GCF_000188075.1_Si_gnG] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Solenopsis_invicta/all_assembly_versions/GCF_000188075.1_Si_gnG/ invertebrate] | |||
|- | |||
! 156 | |||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4] | |||
| Strongylocentrotus purpuratus | |||
| S. purpuratus | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000002235.3/ GCF_000002235.3_Spur_3.1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Strongylocentrotus_purpuratus/all_assembly_versions/GCF_000002235.3_Spur_3.1/ invertebrate] | |||
|- | |||
! 157 | |||
| araTha1 | |||
| Arabidopsis thaliana | |||
| notFound | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000001735.3/ GCF_000001735.3_TAIR10] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/Arabidopsis_thaliana/all_assembly_versions/GCF_000001735.3_TAIR10/ plant] | |||
|- | |||
! 158 | |||
| ricCom1 | |||
| Ricinus communis | |||
| notFound | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000151685.1/ GCF_000151685.1_JCVI_RCG_1.1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/Ricinus_communis/all_assembly_versions/GCF_000151685.1_JCVI_RCG_1.1/ plant] | |||
|- | |||
! 159 | |||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=resEbo1 resEbo1] | |||
| Reston ebolavirus | |||
| Reston ebolavirus | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000854085.1/ GCF_000854085.1_ViralProj15006] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Reston_ebolavirus/all_assembly_versions/GCF_000854085.1_ViralProj15006/ viral] | |||
|- | |||
! 160 | |||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sudEbo1 sudEbo1] | |||
| Sudan ebolavirus | |||
| Sudan ebolavirus | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000855585.1/ GCF_000855585.1_ViralProj15012] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Sudan_ebolavirus/all_assembly_versions/GCF_000855585.1_ViralProj15012/ viral] | |||
|- | |||
! 161 | |||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taiEbo1 taiEbo1] | |||
| Tai Forest ebolavirus | |||
| Tai forest ebolavirus | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000888475.1/ GCF_000888475.1_ViralProj51257] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Tai_Forest_ebolavirus/all_assembly_versions/GCF_000888475.1_ViralProj51257/ viral] | |||
|- | |||
! 162 | |||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zaiEbo1 zaiEbo1] | |||
| Zaire ebolavirus | |||
| Zaire ebolavirus | |||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000848505.1/ GCF_000848505.1_ViralProj14703] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Zaire_ebolavirus/all_assembly_versions/GCF_000848505.1_ViralProj14703/ viral] | |||
|} | |} | ||
Revision as of 15:03, 11 August 2016
The correspondence indicated here is exact. Each sequence in both assemblies id identical. Future improvement to this table will indicate subsets, when one assembly is a complete subset of the other, and partial matches when one assembly is mostly identical to the other.
The columns can be sorted. Click on the small arrow icon next to the column header name
The external links go to:
- UCSC browser - genome-test genome browser
- Entrez assembly - assembly information page at NCBI
- NCBI FTP - ftp directory at NCBI where the assembly can be obtained
