UCSC to RefSeq correspondence: Difference between revisions

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(with <span style="color:red";>(has dups)</span> indication)
Line 1: Line 1:
<p>The correspondence indicated here is exact.  Each sequence
The correspondence indicated here is exact.  Each sequence
in both assemblies is identical.  Future improvement to this table
in both assemblies is identical.  Future improvement to this table
will indicate subsets, when one assembly is a complete subset of
will indicate subsets, when one assembly is a complete subset of
the other, and partial matches when one assembly is mostly
the other, and partial matches when one assembly is mostly
identical to the other.</p>
identical to the other.
<p>The columns can be sorted.  Click on the small arrow
 
icon next to the column header name</p>
The columns can be sorted.  Click on the small arrow
<p>The external links go to:
icon next to the column header name
<ul>
 
<li> UCSC browser - genome-test genome browser</li>
The external links go to:
<li> Entrez assembly - assembly information page at NCBI</li>
* UCSC browser - genome-test genome browser
<li> NCBI FTP - ftp directory at NCBI where the assembly can be obtained</li>
* Entrez assembly - assembly information page at NCBI
</ul></p>
* NCBI FTP - ftp directory at NCBI where the assembly can be obtained
 
 
Note about the <span style="color:red">(has dups)</span> indication.
Some older assemblies have entire sequences duplicated in multiple contigs
in both the NCBI assembly and the UCSC assembly.  Most newer UCSC assemblies
have removed the duplicate contigs, and newer NCBI assemblies now also
remove the duplicate contigs.  These duplicate contigs will cause
confusion when coordinating chromosome names.
 
{| border='1' style='border-collapse:collapse' class='wikitable sortable'
{| border='1' style='border-collapse:collapse' class='wikitable sortable'
|+ UCSC to Genbank assembly accession correspondence
|+ UCSC to Genbank assembly accession correspondence
Line 148: Line 157:
|-
|-
! 19
! 19
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5](has dups)
| Felis&nbsp;catus
| Felis&nbsp;catus
| Cat
| Cat
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000181335.1/ GCF_000181335.1_Felis_catus-6.2]
| style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000181335.1/ GCF_000181335.1_Felis_catus-6.2](has dups)
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCF_000181335.1_Felis_catus-6.2/ vertebrate_mammalian]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCF_000181335.1_Felis_catus-6.2/ vertebrate_mammalian]
|-
|-
Line 267: Line 276:
|-
|-
! 36
! 36
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3](has dups)
| Otolemur&nbsp;garnettii
| Otolemur&nbsp;garnettii
| Bushbaby
| Bushbaby
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000181295.1/ GCF_000181295.1_OtoGar3]
| style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000181295.1/ GCF_000181295.1_OtoGar3](has dups)
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Otolemur_garnettii/all_assembly_versions/GCF_000181295.1_OtoGar3/ vertebrate_mammalian]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Otolemur_garnettii/all_assembly_versions/GCF_000181295.1_OtoGar3/ vertebrate_mammalian]
|-
|-
Line 736: Line 745:
|-
|-
! 103
! 103
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2](has dups)
| Oreochromis&nbsp;niloticus
| Oreochromis&nbsp;niloticus
| Nile tilapia
| Nile tilapia
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000188235.2/ GCF_000188235.2_Orenil1.1]
| style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000188235.2/ GCF_000188235.2_Orenil1.1](has dups)
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Oreochromis_niloticus/all_assembly_versions/GCF_000188235.2_Orenil1.1/ vertebrate_other]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Oreochromis_niloticus/all_assembly_versions/GCF_000188235.2_Orenil1.1/ vertebrate_other]
|-
|-
Line 946: Line 955:
|-
|-
! 133
! 133
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3]
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3](has dups)
| Drosophila&nbsp;ananassae
| Drosophila&nbsp;ananassae
| D. ananassae
| D. ananassae
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000005115.1/ GCF_000005115.1_dana_caf1]
| style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000005115.1/ GCF_000005115.1_dana_caf1](has dups)
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Drosophila_ananassae/all_assembly_versions/GCF_000005115.1_dana_caf1/ invertebrate]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Drosophila_ananassae/all_assembly_versions/GCF_000005115.1_dana_caf1/ invertebrate]
|-
|-
Line 1,051: Line 1,060:
|-
|-
! 148
! 148
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3]
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3](has dups)
| Drosophila&nbsp;virilis
| Drosophila&nbsp;virilis
| D. virilis
| D. virilis
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000005245.1/ GCF_000005245.1_dvir_caf1]
| style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000005245.1/ GCF_000005245.1_dvir_caf1](has dups)
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Drosophila_virilis/all_assembly_versions/GCF_000005245.1_dvir_caf1/ invertebrate]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Drosophila_virilis/all_assembly_versions/GCF_000005245.1_dvir_caf1/ invertebrate]
|-
|-
Line 1,079: Line 1,088:
|-
|-
! 152
! 152
| linHum0
| style="color:red;" | linHum0(has dups)
| Linepithema&nbsp;humile
| Linepithema&nbsp;humile
| notFound
| notFound
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000217595.1/ GCF_000217595.1_Lhum_UMD_V04]
| style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000217595.1/ GCF_000217595.1_Lhum_UMD_V04](has dups)
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Linepithema_humile/all_assembly_versions/GCF_000217595.1_Lhum_UMD_V04/ invertebrate]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Linepithema_humile/all_assembly_versions/GCF_000217595.1_Lhum_UMD_V04/ invertebrate]
|-
|-
Line 1,107: Line 1,116:
|-
|-
! 156
! 156
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4]
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4](has dups)
| Strongylocentrotus&nbsp;purpuratus
| Strongylocentrotus&nbsp;purpuratus
| S. purpuratus
| S. purpuratus
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000002235.3/ GCF_000002235.3_Spur_3.1]
| style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000002235.3/ GCF_000002235.3_Spur_3.1](has dups)
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Strongylocentrotus_purpuratus/all_assembly_versions/GCF_000002235.3_Spur_3.1/ invertebrate]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Strongylocentrotus_purpuratus/all_assembly_versions/GCF_000002235.3_Spur_3.1/ invertebrate]
|-
|-
Line 1,128: Line 1,137:
|-
|-
! 159
! 159
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bunEbo1 bunEbo1]
| Bundibugyo&nbsp;ebolavirus<br>Bundibugyo&nbsp;virus
| Bundibugyo ebolavirus
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000889155.1/ GCF_000889155.1_ViralProj51245]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Bundibugyo_virus/all_assembly_versions/GCF_000889155.1_ViralProj51245/ viral]
|-
! 160
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=resEbo1 resEbo1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=resEbo1 resEbo1]
| Reston&nbsp;ebolavirus
| Reston&nbsp;ebolavirus
Line 1,134: Line 1,150:
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Reston_ebolavirus/all_assembly_versions/GCF_000854085.1_ViralProj15006/ viral]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Reston_ebolavirus/all_assembly_versions/GCF_000854085.1_ViralProj15006/ viral]
|-
|-
! 160
! 161
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sudEbo1 sudEbo1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sudEbo1 sudEbo1]
| Sudan&nbsp;ebolavirus
| Sudan&nbsp;ebolavirus
Line 1,141: Line 1,157:
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Sudan_ebolavirus/all_assembly_versions/GCF_000855585.1_ViralProj15012/ viral]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Sudan_ebolavirus/all_assembly_versions/GCF_000855585.1_ViralProj15012/ viral]
|-
|-
! 161
! 162
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taiEbo1 taiEbo1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taiEbo1 taiEbo1]
| Tai&nbsp;Forest&nbsp;ebolavirus
| Tai&nbsp;Forest&nbsp;ebolavirus
Line 1,148: Line 1,164:
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Tai_Forest_ebolavirus/all_assembly_versions/GCF_000888475.1_ViralProj51257/ viral]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Tai_Forest_ebolavirus/all_assembly_versions/GCF_000888475.1_ViralProj51257/ viral]
|-
|-
! 162
! 163
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zaiEbo1 zaiEbo1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zaiEbo1 zaiEbo1]
| Zaire&nbsp;ebolavirus
| Zaire&nbsp;ebolavirus
Line 1,154: Line 1,170:
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000848505.1/ GCF_000848505.1_ViralProj14703]
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000848505.1/ GCF_000848505.1_ViralProj14703]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Zaire_ebolavirus/all_assembly_versions/GCF_000848505.1_ViralProj14703/ viral]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/Zaire_ebolavirus/all_assembly_versions/GCF_000848505.1_ViralProj14703/ viral]
|-
! 164
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3]
| Saccharomyces&nbsp;cerevisiae
| S. cerevisiae
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000146045.2/ GCF_000146045.2_R64]
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/Saccharomyces_cerevisiae/all_assembly_versions/GCF_000146045.2_R64/ fungi]
|}
|}

Revision as of 17:05, 12 August 2016

The correspondence indicated here is exact. Each sequence in both assemblies is identical. Future improvement to this table will indicate subsets, when one assembly is a complete subset of the other, and partial matches when one assembly is mostly identical to the other.

The columns can be sorted. Click on the small arrow icon next to the column header name

The external links go to:

  • UCSC browser - genome-test genome browser
  • Entrez assembly - assembly information page at NCBI
  • NCBI FTP - ftp directory at NCBI where the assembly can be obtained


Note about the (has dups) indication. Some older assemblies have entire sequences duplicated in multiple contigs in both the NCBI assembly and the UCSC assembly. Most newer UCSC assemblies have removed the duplicate contigs, and newer NCBI assemblies now also remove the duplicate contigs. These duplicate contigs will cause confusion when coordinating chromosome names.

UCSC to Genbank assembly accession correspondence
count UCSC browser scientific name(s) common name Entrez assembly NCBI FTP
1 CHM1 mole
Homo sapiens 		Homo sapiens hydatidiform mole assembly chm1 GCF_000306695.2_CHM1_1.1 vertebrate_mammalian
2 ailMel1 Ailuropoda melanoleuca Panda GCF_000004335.2_AilMel_1.0 vertebrate_mammalian
3 balAcu1 Balaenoptera acutorostrata scammoni
Balaenoptera acutorostrata 		Minke whale GCF_000493695.1_BalAcu1.0 vertebrate_mammalian
4 bosTau8 Bos taurus Cow GCF_000003055.5_Bos_taurus_UMD_3.1.1 vertebrate_mammalian
5 bubBub1 Bubalus bubalis Water buffalo GCF_000471725.1_UMD_CASPUR_WB_2.0 vertebrate_mammalian
6 calJac3 Callithrix jacchus Marmoset GCF_000004665.1_Callithrix_jacchus-3.2 vertebrate_mammalian
7 camFer1 Camelus ferus Bactrian camel GCF_000311805.1_CB1 vertebrate_mammalian
8 canFam3 Canis lupus familiaris
Canis lupus 		Dog GCF_000002285.3_CanFam3.1 vertebrate_mammalian
9 capHir1 Capra hircus Domestic goat GCF_000317765.1_CHIR_1.0 vertebrate_mammalian
10 cavPor3 Cavia porcellus Guinea pig GCF_000151735.1_Cavpor3.0 vertebrate_mammalian
11 cerSim1 Ceratotherium simum White rhinoceros GCF_000283155.1_CerSimSim1.0 vertebrate_mammalian
12 chlSab2 Chlorocebus sabaeus Green monkey GCF_000409795.2_Chlorocebus_sabeus_1.1 vertebrate_mammalian
13 chrAsi1 Chrysochloris asiatica Cape golden mole GCF_000296735.1_ChrAsi1.0 vertebrate_mammalian
14 colAng1 Colobus angolensis palliatus
Colobus angolensis 		Angolan colobus GCF_000951035.1_Cang.pa_1.0 vertebrate_mammalian
15 dasNov3 Dasypus novemcinctus Armadillo GCF_000208655.1_Dasnov3.0 vertebrate_mammalian
16 echTel2 Echinops telfairi Tenrec GCF_000313985.1_EchTel2.0 vertebrate_mammalian
17 eleEdw1 Elephantulus edwardii Cape elephant shrew GCF_000299155.1_EleEdw1.0 vertebrate_mammalian
18 eriEur2 Erinaceus europaeus Hedgehog GCF_000296755.1_EriEur2.0 vertebrate_mammalian
19 felCat5(has dups) Felis catus Cat GCF_000181335.1_Felis_catus-6.2(has dups) vertebrate_mammalian
20 felCat8 Felis catus Cat GCF_000181335.2_Felis_catus_8.0 vertebrate_mammalian
21 galVar1 Galeopterus variegatus Malayan flying lemur GCF_000696425.1_G_variegatus-3.0.2 vertebrate_mammalian
22 hetGla2 Heterocephalus glaber Naked mole-rat GCF_000247695.1_HetGla_female_1.0 vertebrate_mammalian
23 hg38 Homo sapiens Human GCF_000001405.26_GRCh38 vertebrate_mammalian
24 lepWed1 Leptonychotes weddellii Weddell seal GCF_000349705.1_LepWed1.0 vertebrate_mammalian
25 lipVex1 Lipotes vexillifer Yangtze river dolphin GCF_000442215.1_Lipotes_vexillifer_v1 vertebrate_mammalian
26 macFas5 Macaca fascicularis Crab-eating macaque GCF_000364345.1_Macaca_fascicularis_5.0 vertebrate_mammalian
27 mesAur1 Mesocricetus auratus Golden hamster GCF_000349665.1_MesAur1.0 vertebrate_mammalian
28 micMur2 Microcebus murinus Mouse lemur GCF_000165445.1_Mmur_2.0 vertebrate_mammalian
29 micOch1 Microtus ochrogaster Prairie vole GCF_000317375.1_MicOch1.0 vertebrate_mammalian
30 myoBra1 Myotis brandtii Brandt's myotis (bat) GCF_000412655.1_ASM41265v1 vertebrate_mammalian
31 myoDav1 Myotis davidii David's myotis (bat) GCF_000327345.1_ASM32734v1 vertebrate_mammalian
32 myoLuc2 Myotis lucifugus Microbat GCF_000147115.1_Myoluc2.0 vertebrate_mammalian
33 nanGal1 Nannospalax galili Upper Galilee mountains blind mole rat GCF_000622305.1_S.galili_v1.0 vertebrate_mammalian
34 orcOrc1 Orcinus orca Killer whale GCF_000331955.2_Oorc_1.1 vertebrate_mammalian
35 oryAfe1 Orycteropus afer afer
Orycteropus afer 		Aardvark GCF_000298275.1_OryAfe1.0 vertebrate_mammalian
36 otoGar3(has dups) Otolemur garnettii Bushbaby GCF_000181295.1_OtoGar3(has dups) vertebrate_mammalian
37 oviAri3 Ovis aries Sheep GCF_000298735.1_Oar_v3.1 vertebrate_mammalian
38 panHod1 Pantholops hodgsonii Tibetan antelope GCF_000400835.1_PHO1.0 vertebrate_mammalian
39 panPan1 Pan paniscus Bonobo GCF_000258655.1_panpan1 vertebrate_mammalian
40 panPan2 Pan paniscus Bonobo GCF_000258655.2_panpan1.1 vertebrate_mammalian
41 panTig1 Panthera tigris altaica
Panthera tigris 		Amur tiger GCF_000464555.1_PanTig1.0 vertebrate_mammalian
42 panTro4 Pan troglodytes Chimp GCF_000001515.6_Pan_troglodytes-2.1.4 vertebrate_mammalian
43 panTro5 Pan troglodytes Chimp GCF_000001515.7_Pan_tro_3.0 vertebrate_mammalian
44 papAnu2 Papio anubis Baboon GCF_000264685.1_Panu_2.0 vertebrate_mammalian
45 perManBai1 Peromyscus maniculatus bairdii
Peromyscus maniculatus 		Prairie deer mouse GCF_000500345.1_Pman_1.0 vertebrate_mammalian
46 phyCat1 Physeter catodon Sperm whale GCF_000472045.1_Physeter_macrocephalus-2.0.2 vertebrate_mammalian
47 rheMac8 Macaca mulatta Rhesus GCF_000772875.2_Mmul_8.0.1 vertebrate_mammalian
48 rhiRox1 Rhinopithecus roxellana Golden snub-nosed monkey GCF_000769185.1_Rrox_v1 vertebrate_mammalian
49 rouAeg1 Rousettus aegyptiacus Egyptian rousette GCF_001466805.2_Raegyp2.0 vertebrate_mammalian
50 sarHar1 Sarcophilus harrisii Tasmanian devil GCF_000189315.1_Devil_ref_v7.0 vertebrate_mammalian
51 sorAra2 Sorex araneus Shrew GCF_000181275.1_SorAra2.0 vertebrate_mammalian
52 speTri2 Spermophilus tridecemlineatus
Ictidomys tridecemlineatus 		Squirrel GCF_000236235.1_SpeTri2.0 vertebrate_mammalian
53 susScr3 Sus scrofa Pig GCF_000003025.5_Sscrofa10.2 vertebrate_mammalian
54 tarSyr2 Tarsius syrichta
Carlito syrichta 		Tarsier GCF_000164805.1_Tarsius_syrichta-2.0.1 vertebrate_mammalian
55 tarSyr2 Tarsius syrichta Tarsier GCF_000164805.1_Tarsius_syrichta-2.0.1 vertebrate_mammalian
56 triMan1 Trichechus manatus latirostris
Trichechus manatus 		Manatee GCF_000243295.1_TriManLat1.0 vertebrate_mammalian
57 tupChi1 Tupaia chinensis Chinese tree shrew GCF_000334495.1_TupChi_1.0 vertebrate_mammalian
58 ursMar1 Ursus maritimus Polar bear GCF_000687225.1_UrsMar_1.0 vertebrate_mammalian
59 allMis1 Alligator mississippiensis American alligator GCF_000281125.1_allMis0.2 vertebrate_other
60 allSin1 Alligator sinensis Chinese alligator GCF_000455745.1_ASM45574v1 vertebrate_other
61 anaPla1 Anas platyrhynchos Mallard duck GCF_000355885.1_BGI_duck_1.0 vertebrate_other
62 anoCar2 Anolis carolinensis Lizard GCF_000090745.1_AnoCar2.0 vertebrate_other
63 apaVit1 Apaloderma vittatum Bar tailed trogon GCF_000703405.1_ASM70340v1 vertebrate_other
64 aptFor1 Aptenodytes forsteri Emperor penguin GCF_000699145.1_ASM69914v1 vertebrate_other
65 bucRhi1 Buceros rhinoceros silvestris
Buceros rhinoceros 		Rhinoceros hornbill GCF_000710305.1_ASM71030v1 vertebrate_other
66 calAnn1 Calypte anna Anna's hummingbird GCF_000699085.1_ASM69908v1 vertebrate_other
67 calMil1 Callorhinchus milii Elephant shark GCF_000165045.1_Callorhinchus_milii-6.1.3 vertebrate_other
68 capCar1 Caprimulgus carolinensis Chuck-will's-widow GCF_000700745.1_ASM70074v1 vertebrate_other
69 carCri1 Cariama cristata Red-legged seriema GCF_000690535.1_ASM69053v1 vertebrate_other
70 chaVoc2 Charadrius vociferus Killdeer GCF_000708025.1_ASM70802v2 vertebrate_other
71 cheMyd1 Chelonia mydas Green seaturtle GCF_000344595.1_CheMyd_1.0 vertebrate_other
72 chlUnd1 Chlamydotis undulata macqueenii
Chlamydotis macqueenii 		Houbara bustard GCF_000695195.1_ASM69519v1 vertebrate_other
73 colLiv1 Columba livia Rock pigeon GCF_000337935.1_Cliv_1.0 vertebrate_other
74 colStr1 Colius striatus Speckled mousebird GCF_000690715.1_ASM69071v1 vertebrate_other
75 corBra1 Corvus brachyrhynchos American crow GCF_000691975.1_ASM69197v1 vertebrate_other
76 cucCan1 Cuculus canorus Common cuckoo GCF_000709325.1_ASM70932v1 vertebrate_other
77 cynSem1 Cynoglossus semilaevis Tongue sole GCF_000523025.1_Cse_v1.0 vertebrate_other
78 danRer10 Danio rerio Zebrafish GCF_000002035.5_GRCz10 vertebrate_other
79 danRer7 Danio rerio Zebrafish GCF_000002035.4_Zv9 vertebrate_other
80 egrGar1 Egretta garzetta Little egret GCF_000687185.1_ASM68718v1 vertebrate_other
81 eurHel1 Eurypyga helias Sunbittern GCF_000690775.1_ASM69077v1 vertebrate_other
82 falChe1 Falco cherrug Saker falcon GCF_000337975.1_F_cherrug_v1.0 vertebrate_other
83 falPer1 Falco peregrinus Peregrine falcon GCF_000337955.1_F_peregrinus_v1.0 vertebrate_other
84 ficAlb2 Ficedula albicollis Collared flycatcher GCF_000247815.1_FicAlb1.5 vertebrate_other
85 fr3 Takifugu rubripes Fugu GCF_000180615.1_FUGU5 vertebrate_other
86 fulGla1 Fulmarus glacialis Northern fulmar GCF_000690835.1_ASM69083v1 vertebrate_other
87 galGal4 Gallus gallus Chicken GCF_000002315.3_Gallus_gallus-4.0 vertebrate_other
88 galGal5 Gallus gallus Chicken GCF_000002315.4_Gallus_gallus-5.0 vertebrate_other
89 gavSte1 Gavia stellata Red-throated loon GCF_000690875.1_ASM69087v1 vertebrate_other
90 gekJap0 Gekko japonicus notFound GCF_001447785.1_Gekko_japonicus_V1.1 vertebrate_other
91 geoFor1 Geospiza fortis Medium ground finch GCF_000277835.1_GeoFor_1.0 vertebrate_other
92 halAlb1 Haliaeetus albicilla White-tailed eagle GCF_000691405.1_ASM69140v1 vertebrate_other
93 halLeu1 Haliaeetus leucocephalus Bald eagle GCF_000737465.1_Haliaeetus_leucocephalus-4.0 vertebrate_other
94 latCha1 Latimeria chalumnae Coelacanth GCF_000225785.1_LatCha1 vertebrate_other
95 lepDis1 Leptosomus discolor Cuckoo roller GCF_000691785.1_ASM69178v1 vertebrate_other
96 mayZeb1 Maylandia zebra Zebra mbuna GCF_000238955.1_MetZeb1.1 vertebrate_other
97 melUnd1 Melopsittacus undulatus Budgerigar GCF_000238935.1_Melopsittacus_undulatus_6.3 vertebrate_other
98 merNub1 Merops nubicus Northern carmine bee-eater GCF_000691845.1_ASM69184v1 vertebrate_other
99 mesUni1 Mesitornis unicolor Brown roatelo GCF_000695765.1_ASM69576v1 vertebrate_other
100 nipNip1 Nipponia nippon Crested ibis GCF_000708225.1_ASM70822v1 vertebrate_other
101 notCor1 Notothenia coriiceps Black rockcod GCF_000735185.1_NC01 vertebrate_other
102 opiHoa1 Opisthocomus hoazin Hoatzin GCF_000692075.1_ASM69207v1 vertebrate_other
103 oreNil2(has dups) Oreochromis niloticus Nile tilapia GCF_000188235.2_Orenil1.1(has dups) vertebrate_other
104 pelCri1 Pelecanus crispus Dalmatian pelican GCF_000687375.1_ASM68737v1 vertebrate_other
105 pelSin1 Pelodiscus sinensis Chinese softshell turtle GCF_000230535.1_PelSin_1.0 vertebrate_other
106 phaCar1 Phalacrocorax carbo Great cormorant GCF_000708925.1_ASM70892v1 vertebrate_other
107 phaLep1 Phaethon lepturus White-tailed tropicbird GCF_000687285.1_ASM68728v1 vertebrate_other
108 picPub1 Picoides pubescens Downy woodpecker GCF_000699005.1_ASM69900v1 vertebrate_other
109 poeFor1 Poecilia formosa Amazon molly GCF_000485575.1_Poecilia_formosa-5.1.2 vertebrate_other
110 pseHum1 Pseudopodoces humilis Tibetan ground jay GCF_000331425.1_PseHum1.0 vertebrate_other
111 pteGut1 Pterocles gutturalis Yellow-throated sandgrouse GCF_000699245.1_ASM69924v1 vertebrate_other
112 pytBiv0 Python bivittatus notFound GCF_000186305.1_Python_molurus_bivittatus-5.0.2 vertebrate_other
113 pytBiv1 Python bivittatus Burmese python GCF_000186305.1_Python_molurus_bivittatus-5.0.2 vertebrate_other
114 strCam1 Struthio camelus australis
Struthio camelus 		Ostrich GCF_000698965.1_ASM69896v1 vertebrate_other
115 taeGut2 Taeniopygia guttata Zebra finch GCF_000151805.1_Taeniopygia_guttata-3.2.4 vertebrate_other
116 tauEry1 Tauraco erythrolophus Red crested turaco GCF_000709365.1_ASM70936v1 vertebrate_other
117 thaSir0 Thamnophis sirtalis notFound GCF_001077635.1_Thamnophis_sirtalis-6.0 vertebrate_other
118 tinGut2 Tinamus guttatus White throated tinamou GCF_000705375.1_ASM70537v2 vertebrate_other
119 tytAlb1 Tyto alba Barn owl GCF_000687205.1_ASM68720v1 vertebrate_other
120 xenTro7 Xenopus tropicalis
Xenopus Silurana tropicalis 		X. tropicalis GCF_000004195.2_Xtropicalis_v7 vertebrate_other
121 xenTro7 Xenopus tropicalis X. tropicalis GCF_000004195.2_Xtropicalis_v7 vertebrate_other
122 xipMac1 Xiphophorus maculatus Southern platyfish GCF_000241075.1_Xiphophorus_maculatus-4.4.2 vertebrate_other
123 zonAlb1 Zonotrichia albicollis White-throated sparrow GCF_000385455.1_Zonotrichia_albicollis-1.0.1 vertebrate_other
124 acrEch0 Acromyrmex echinatior notFound GCF_000204515.1_Aech_3.9 invertebrate
125 apiMel4 Apis mellifera A. mellifera GCF_000002195.4_Amel_4.5 invertebrate
126 attCep0 Atta cephalotes notFound GCF_000143395.1_Attacep1.0 invertebrate
127 caeRem4 Caenorhabditis remanei C. remanei GCF_000149515.1_ASM14951v1 invertebrate
128 camFlo0 Camponotus floridanus notFound GCF_000147175.1_CamFlo_1.0 invertebrate
129 ce11 Caenorhabditis elegans C. elegans GCF_000002985.6_WBcel235 invertebrate
130 cerBir0 Cerapachys biroi notFound GCF_000611835.1_CerBir1.0 invertebrate
131 ci3 Ciona intestinalis C. intestinalis GCF_000224145.1_KH invertebrate
132 dm6 Drosophila melanogaster D. melanogaster GCF_000001215.4_Release_6_plus_ISO1_MT invertebrate
133 droAna3(has dups) Drosophila ananassae D. ananassae GCF_000005115.1_dana_caf1(has dups) invertebrate
134 droBia2 Drosophila biarmipes D. biarmipes GCF_000233415.1_Dbia_2.0 invertebrate
135 droBip2 Drosophila bipectinata D. bipectinata GCF_000236285.1_Dbip_2.0 invertebrate
136 droEle2 Drosophila elegans D. elegans GCF_000224195.1_Dele_2.0 invertebrate
137 droEre2 Drosophila erecta D. erecta GCF_000005135.1_dere_caf1 invertebrate
138 droEug2 Drosophila eugracilis D. eugracilis GCF_000236325.1_Deug_2.0 invertebrate
139 droFic2 Drosophila ficusphila D. ficusphila GCF_000220665.1_Dfic_2.0 invertebrate
140 droGri2 Drosophila grimshawi D. grimshawi GCF_000005155.2_dgri_caf1 invertebrate
141 droKik2 Drosophila kikkawai D. kikkawai GCF_000224215.1_Dkik_2.0 invertebrate
142 droMir2 Drosophila miranda D. miranda GCF_000269505.1_DroMir_2.2 invertebrate
143 droMoj3 Drosophila mojavensis D. mojavensis GCF_000005175.2_dmoj_caf1 invertebrate
144 droPer1 Drosophila persimilis D. persimilis GCF_000005195.2_dper_caf1 invertebrate
145 droRho2 Drosophila rhopaloa D. rhopaloa GCF_000236305.1_Drho_2.0 invertebrate
146 droSuz1 Drosophila suzukii D. suzukii GCF_000472105.1_Dsuzukii.v01 invertebrate
147 droTak2 Drosophila takahashii D. takahashii GCF_000224235.1_Dtak_2.0 invertebrate
148 droVir3(has dups) Drosophila virilis D. virilis GCF_000005245.1_dvir_caf1(has dups) invertebrate
149 droWil2 Drosophila willistoni D. willistoni GCF_000005925.1_dwil_caf1 invertebrate
150 droYak3 Drosophila yakuba D. yakuba GCF_000005975.2_dyak_caf1 invertebrate
151 harSal0 Harpegnathos saltator notFound GCF_000147195.1_HarSal_1.0 invertebrate
152 linHum0(has dups) Linepithema humile notFound GCF_000217595.1_Lhum_UMD_V04(has dups) invertebrate
153 lotGig0 Lottia gigantea Limpet GCF_000327385.1_Helro1 invertebrate
154 pogBar0 Pogonomyrmex barbatus notFound GCF_000187915.1_Pbar_UMD_V03 invertebrate
155 solInv0 Solenopsis invicta notFound GCF_000188075.1_Si_gnG invertebrate
156 strPur4(has dups) Strongylocentrotus purpuratus S. purpuratus GCF_000002235.3_Spur_3.1(has dups) invertebrate
157 araTha1 Arabidopsis thaliana notFound GCF_000001735.3_TAIR10 plant
158 ricCom1 Ricinus communis notFound GCF_000151685.1_JCVI_RCG_1.1 plant
159 bunEbo1 Bundibugyo ebolavirus
Bundibugyo virus 		Bundibugyo ebolavirus GCF_000889155.1_ViralProj51245 viral
160 resEbo1 Reston ebolavirus Reston ebolavirus GCF_000854085.1_ViralProj15006 viral
161 sudEbo1 Sudan ebolavirus Sudan ebolavirus GCF_000855585.1_ViralProj15012 viral
162 taiEbo1 Tai Forest ebolavirus Tai forest ebolavirus GCF_000888475.1_ViralProj51257 viral
163 zaiEbo1 Zaire ebolavirus Zaire ebolavirus GCF_000848505.1_ViralProj14703 viral
164 sacCer3 Saccharomyces cerevisiae S. cerevisiae GCF_000146045.2_R64 fungi
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