RefSeq mammals browser status: Difference between revisions

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(fixup names for TBD assemblies)
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| Degu
| Degu
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1(1)]
| octDeg11 TBD
| octDeg1 TBD
| n/a
| n/a
|-
|-
Line 239: Line 239:
| Star-nosed mole
| Star-nosed mole
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1(1)]
| conCri11 TBD
| conCri1 TBD
| n/a
| n/a
|-
|-
Line 255: Line 255:
| Lesser Egyptian jerboa
| Lesser Egyptian jerboa
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1(1)]
| jacJac11 TBD
| jacJac1 TBD
| n/a
| n/a
|-
|-
Line 279: Line 279:
| Cape golden mole
| Cape golden mole
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1(1)]
| chrAsi11 TBD
| chrAsi1 TBD
| n/a
| n/a
|-
|-
Line 295: Line 295:
| Aardvark
| Aardvark
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1(1)]
| oryAfe11 TBD
| oryAfe1 TBD
| n/a
| n/a
|-
|-
Line 319: Line 319:
| Cape elephant shrew
| Cape elephant shrew
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1(1)]
| eleEdw11 TBD
| eleEdw1 TBD
| n/a
| n/a
|-
|-
Line 327: Line 327:
| Big brown bat
| Big brown bat
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1(1)]
| eptFus11 TBD
| eptFus1 TBD
| n/a
| n/a
|-
|-
Line 359: Line 359:
| Walrus
| Walrus
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1(1)]
| odoRosDiv11 TBD
| odoRosDiv1 TBD
| n/a
| n/a
|-
|-
Line 367: Line 367:
| Black flying fox
| Black flying fox
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1(1)]
| pteAle11 TBD
| pteAle1 TBD
| n/a
| n/a
|-
|-
Line 375: Line 375:
| David's myotis bat
| David's myotis bat
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1(1)]
| myoDav11 TBD
| myoDav1 TBD
| n/a
| n/a
|-
|-
Line 391: Line 391:
| Chinese tree shrew
| Chinese tree shrew
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1(1)]
| tupChi11 TBD
| tupChi1 TBD
| n/a
| n/a
|-
|-
Line 399: Line 399:
| Golden hamster
| Golden hamster
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1(1)]
| mesAur11 TBD
| mesAur1 TBD
| n/a
| n/a
|-
|-
Line 407: Line 407:
| Weddell seal
| Weddell seal
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1(1)]
| lepWed11 TBD
| lepWed1 TBD
| n/a
| n/a
|-
|-
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| Chiru (Tibetan antelope)
| Chiru (Tibetan antelope)
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1(1)]
| panHod11 TBD
| panHod1 TBD
| n/a
| n/a
|-
|-
Line 591: Line 591:
| Goat
| Goat
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1(1)]
| capHir11 TBD
| capHir1 TBD
| n/a
| n/a
|-
|-

Revision as of 23:41, 8 February 2017

see also

table

RefSeq mammal assemblies
count taxId scientific name common name hgwdev latest

assembly(count)

RR latest

assembly(count)

photo file
1 10090 Mus musculus Mouse mm10(5) mm10(5) Mus_musculus.jpg
2 10116 Rattus norvegicus Rat rn6(5) rn6(4) Rattus_norvegicus.jpg
3 9785 Loxodonta africana African bush elephant loxAfr3(3) loxAfr3(3) Loxodonta_africana.jpg
4 9258 Ornithorhynchus anatinus Platypus ornAna2(2) ornAna2(2) Ornithorhynchus_anatinus.jpg
5 9612 Canis lupus familiaris Gray wolf canFam3(3) canFam3(3) Canis_lupus_familiaris.jpg
6 13616 Monodelphis domestica Gray short-tailed opossum monDom5(4) monDom5(4) Monodelphis_domestica.jpg
7 9796 Equus caballus Horse equCab2(2) equCab2(2) Equus_caballus.jpg
8 9823 Sus scrofa Pig susScr3(3) susScr3(2) Sus_scrofa.jpg
9 9913 Bos taurus Cow bosTau8(8) bosTau8(9) Bos_taurus.jpg
10 9986 Oryctolagus cuniculus Rabbit oryCun2(2) oryCun2(2) Oryctolagus_cuniculus.jpg
11 9646 Ailuropoda melanoleuca Giant panda ailMel1(1) ailMel1(1) Ailuropoda_melanoleuca.jpg
12 59463 Myotis lucifugus Little brown bat myoLuc2(2) myoLuc2(2) Myotis_lucifugus.jpg
13 10141 Cavia porcellus Guinea pig cavPor3(2) cavPor3(2) Cavia_porcellus.jpg
14 132908 Pteropus vampyrus Large flying fox pteVam1(1) pteVam1(1) Pteropus_vampyrus.jpg
15 10020 Dipodomys ordii Ord's kangaroo rat dipOrd1(1) dipOrd1(1) Dipodomys_ordii.jpg
16 30538 Vicugna pacos Alpaca vicPac2(2) vicPac2(2) Vicugna_pacos.png
17 42254 Sorex araneus European shrew sorAra2(2) sorAra2(2) Sorex_araneus.jpg
18 9685 Felis catus Cat felCat8(4) felCat8(4) Felis_catus.jpg
19 9305 Sarcophilus harrisii Tasmanian devil sarHar1(1) sarHar1(1) Sarcophilus_harrisii.jpg
20 9361 Dasypus novemcinctus Nine-banded armadillo dasNov3(3) dasNov3(3) Dasypus_novemcinctus.jpg
21 9668 Mustela putorius furo European polecat musPut1 TBD musPut1 TBD Mustela_putorius_furo.png
22 10029 Cricetulus griseus Chinese hamster criGri1(1) criGri1(1) Cricetulus_griseus.jpg
23 43179 Ictidomys tridecemlineatus Thirteen-lined ground squirrel ictTri1 TBD ictTri1 TBD n/a
24 9778 Trichechus manatus latirostris West Indian manatee triMan1(1) triMan1(1) Trichechus_manatus_latirostris.jpg
25 10181 Heterocephalus glaber Naked mole-rat hetGla2(2) hetGla2(2) Heterocephalus_glaber.jpg
26 9915 Bos indicus Zebu bosInd1 TBD bosInd1 TBD n/a
27 10160 Octodon degus Degu octDeg1(1) octDeg1 TBD n/a
28 143302 Condylura cristata Star-nosed mole conCri1(1) conCri1 TBD n/a
29 34839 Chinchilla lanigera Long tailed chinchilla chiLan1(1) chiLan1(1) Chinchilla_lanigera.jpg
30 51337 Jaculus jaculus Lesser Egyptian jerboa jacJac1(1) jacJac1 TBD n/a
31 9807 Ceratotherium simum simum White rhinoceros cerSim1(1) cerSim1(1) Ceratotherium_simum.jpg
32 9978 Ochotona princeps American pika ochPri3(2) ochPri3(2) Ochotona_princeps.jpg
33 185453 Chrysochloris asiatica Cape golden mole chrAsi1(1) chrAsi1 TBD n/a
34 9365 Erinaceus europaeus Common hedgehog eriEur2(2) eriEur2(2) Erinaceus_europaeus.jpg
35 9818 Orycteropus afer afer Aardvark oryAfe1(1) oryAfe1 TBD n/a
36 72004 Bos mutus Wild yak bosMut1(1) bosMut1 TBD n/a
37 9940 Ovis aries Sheep oviAri3(2) oviAri3(2) Ovis_aries.jpg
38 28737 Elephantulus edwardii Cape elephant shrew eleEdw1(1) eleEdw1 TBD n/a
39 29078 Eptesicus fuscus Big brown bat eptFus1(1) eptFus1 TBD n/a
40 419612 Camelus ferus Wild Bactrian camel camFer1(1) camFer1(1) Camelus_ferus.jpg
41 9371 Echinops telfairi Lesser hedgehog tenrec echTel2(2) echTel2(2) Echinops_telfairi.jpg
42 79684 Microtus ochrogaster Prairie vole micOch1(1) micOch1(1) Microtus_ochrogaster.jpg
43 9707 Odobenus rosmarus divergens Walrus odoRosDiv1(1) odoRosDiv1 TBD n/a
44 9402 Pteropus alecto Black flying fox pteAle1(1) pteAle1 TBD n/a
45 225400 Myotis davidii David's myotis bat myoDav1(1) myoDav1 TBD n/a
46 9733 Orcinus orca Orca orcOrc1(1) orcOrc1(1) Orcinus_orca.jpg
47 246437 Tupaia chinensis Chinese tree shrew tupChi1(1) tupChi1 TBD n/a
48 10036 Mesocricetus auratus Golden hamster mesAur1(1) mesAur1 TBD n/a
49 9713 Leptonychotes weddellii Weddell seal lepWed1(1) lepWed1 TBD n/a
50 59538 Pantholops hodgsonii Chiru (Tibetan antelope) panHod1(1) panHod1 TBD n/a
51 109478 Myotis brandtii Brandt's bat myoBra1(1) myoBra1 TBD n/a
52 118797 Lipotes vexillifer Baiji (Yangtze river dolphin) lipVex1(1) lipVex1 TBD n/a
53 9694 Panthera tigris altaica Tiger panTig1(1) panTig1 TBD Panthera_tigris_altaica.jpg
54 89462 Bubalus bubalis Water buffalo bubBub1(1) bubBub1 TBD n/a
55 9755 Physeter catodon Sperm whale phyCat1(1) phyCat1 TBD n/a
56 9767 Balaenoptera acutorostrata scammoni Minke whale balAcu1(1) balAcu1(1) Balaenoptera_acutorostrata_scammoni.jpg
57 10042 Peromyscus maniculatus bairdii North American deer mouse perManBai1(1) perManBai1 TBD n/a
58 1026970 Nannospalax galili Galilee mole rat nanGal1(1) nanGal1 TBD n/a
59 29073 Ursus maritimus Polar bear ursMar1(1) ursMar1 TBD n/a
60 482537 Galeopterus variegatus Sunda flying lemur galVar1(1) galVar1(1) Galeopterus_variegatus.jpg
61 9798 Equus przewalskii Przewalski horse equPrz1(1) equPrz1 TBD Equus_przewalskii.jpg
62 885580 Fukomys damarensis Damara mole-rat fukDam1 TBD fukDam1 TBD n/a
63 9901 Bison bison bison Bison bisBis1(1) bisBis1 TBD Bison_bison_bison.jpg
64 9838 Camelus dromedarius Dromedary (Arabian) camel camDro1 TBD camDro1 TBD n/a
65 9837 Camelus bactrianus Bactrian (Asia) camel camBac1 TBD camBac1 TBD n/a
66 9793 Equus asinus Donkey equAsi1 TBD equAsi1 TBD n/a
67 32536 Acinonyx jubatus Cheetah aciJub1 TBD aciJub1 TBD n/a
68 9993 Marmota marmota marmota European marmot marMar1 TBD marMar1 TBD n/a
69 9407 Rousettus aegyptiacus Egyptian rousette rouAeg1(1) rouAeg1 TBD Rousettus_aegyptiacus.jpg
70 291302 Miniopterus natalensis Natal long-fingered bat minNat1 TBD minNat1 TBD n/a
71 9974 Manis javanica Malayan pangolin manJav1 TBD manJav1 TBD n/a
72 9925 Capra hircus Goat capHir1(1) capHir1 TBD n/a
73 9691 Panthera pardus Leopard panPar1 TBD panPar1 TBD n/a
74 89399 Rhinolophus sinicus Chinese horseshoe bat rhiSin1 TBD rhiSin1 TBD n/a
75 186990 Hipposideros armiger Great roundleaf bat hipArm1 TBD hipArm1 TBD n/a
76 9739 Tursiops truncatus Bottlenosed dolphin turTru2(2) turTru2(2) Tursiops_truncatus.jpg
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