Little Tools: Difference between revisions
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; [[bedProject]] Will add or substract numbers from positions in a bed file (gawk) | ; [[bedProject]] Will add or substract numbers from positions in a bed file (gawk) | ||
; [[bedTotalSize]] Prints length of region covered by bedfile (python) | ; [[bedTotalSize]] Prints length of region covered by bedfile (python) | ||
; [[ucsc]] Uploads a file to your favorite ftp server and displays it on the UCSC of your choice (bash) | ; [[bedRegion]] Prints the maximum range coverd by a bed (gawk) | ||
; [[ucsc]] Uploads a file to your favorite ftp server and displays it on the UCSC of your choice with firefox (bash) | |||
Revision as of 12:56, 11 August 2006
This is supposed to become a little collection of tools to facilitate everyday work with the UCSC file formats/tools. It's possible that they already exist somewhere in the the source tree but since there is so little documentation about the source tree, I might have overlooked them. I'm trying to add one per week.
- bedProject Will add or substract numbers from positions in a bed file (gawk)
- bedTotalSize Prints length of region covered by bedfile (python)
- bedRegion Prints the maximum range coverd by a bed (gawk)
- ucsc Uploads a file to your favorite ftp server and displays it on the UCSC of your choice with firefox (bash)
