GapOverlap: Difference between revisions

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(correcting years, and add table instructions)
(corrected hg19 and eliminate failures)
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer1 danRer1]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer2 danRer2]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer6 danRer6]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4 dp4]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1 droAlb1]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2 droMir2]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1 droYak1]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2]
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=egrGar1 egrGar1]
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| style='text-align:right'| 229589
| style='text-align:right'| 229589
|-
|-
| 191
| 190
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eidHel1 eidHel1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eidHel1 eidHel1]
Line 1,560: Line 1,551:
| style='text-align:right'| 186
| style='text-align:right'| 186
|-
|-
| 192
| 191
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1]
Line 1,569: Line 1,560:
| style='text-align:right'| 311199
| style='text-align:right'| 311199
|-
|-
| 193
| 192
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1]
Line 1,578: Line 1,569:
| style='text-align:right'| 378407
| style='text-align:right'| 378407
|-
|-
| 194
| 193
| 2007
| 2007
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab1 equCab1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab1 equCab1]
Line 1,587: Line 1,578:
| style='text-align:right'| 6200
| style='text-align:right'| 6200
|-
|-
| 195
| 194
| 2007
| 2007
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]
Line 1,596: Line 1,587:
| style='text-align:right'| 18507
| style='text-align:right'| 18507
|-
|-
| 196
| 195
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equPrz1 equPrz1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equPrz1 equPrz1]
Line 1,605: Line 1,596:
| style='text-align:right'| 12408
| style='text-align:right'| 12408
|-
|-
| 197
| 196
| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]
Line 1,614: Line 1,605:
| style='text-align:right'| 209198
| style='text-align:right'| 209198
|-
|-
| 198
| 197
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]
Line 1,623: Line 1,614:
| style='text-align:right'| 1205265
| style='text-align:right'| 1205265
|-
|-
| 199
| 198
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1 esoLuc1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1 esoLuc1]
Line 1,632: Line 1,623:
| style='text-align:right'| 1227519
| style='text-align:right'| 1227519
|-
|-
| 201
| 200
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1 eurHel1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1 eurHel1]
Line 1,641: Line 1,632:
| style='text-align:right'| 872
| style='text-align:right'| 872
|-
|-
| 203
| 202
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1]
Line 1,650: Line 1,641:
| style='text-align:right'| 35918
| style='text-align:right'| 35918
|-
|-
| 204
| 203
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1]
Line 1,659: Line 1,650:
| style='text-align:right'| 4836
| style='text-align:right'| 4836
|-
|-
| 205
| 204
| 1880
| 1880
| felCat1
| felCat1
Line 1,668: Line 1,659:
| style='text-align:right'| 2708782
| style='text-align:right'| 2708782
|-
|-
| 206
| 205
| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat3 felCat3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat3 felCat3]
Line 1,677: Line 1,668:
| style='text-align:right'| 2708782
| style='text-align:right'| 2708782
|-
|-
| 207
| 206
| 2008
| 2008
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4]
Line 1,686: Line 1,677:
| style='text-align:right'| 9398414
| style='text-align:right'| 9398414
|-
|-
| 208
| 207
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]
Line 1,695: Line 1,686:
| style='text-align:right'| 100569
| style='text-align:right'| 100569
|-
|-
| 209
| 208
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8]
Line 1,704: Line 1,695:
| style='text-align:right'| 89447
| style='text-align:right'| 89447
|-
|-
| 210
| 209
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ficAlb2 ficAlb2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ficAlb2 ficAlb2]
Line 1,713: Line 1,704:
| style='text-align:right'| 206854
| style='text-align:right'| 206854
|-
|-
| 211
| 210
| 2002
| 2002
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1 fr1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1 fr1]
Line 1,722: Line 1,713:
| style='text-align:right'| 16684
| style='text-align:right'| 16684
|-
|-
| 212
| 211
| 2004
| 2004
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2 fr2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2 fr2]
Line 1,731: Line 1,722:
| style='text-align:right'| 2231
| style='text-align:right'| 2231
|-
|-
| 213
| 212
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]
Line 1,740: Line 1,731:
| style='text-align:right'| 2291
| style='text-align:right'| 2291
|-
|-
| 214
| 213
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1 fulGla1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1 fulGla1]
Line 1,749: Line 1,740:
| style='text-align:right'| 1637
| style='text-align:right'| 1637
|-
|-
| 215
| 214
| 2010
| 2010
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]
Line 1,758: Line 1,749:
| style='text-align:right'| 70748
| style='text-align:right'| 70748
|-
|-
| 216
| 215
| 2004
| 2004
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2 galGal2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2 galGal2]
Line 1,767: Line 1,758:
| style='text-align:right'| 17674
| style='text-align:right'| 17674
|-
|-
| 217
| 216
| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3 galGal3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3 galGal3]
Line 1,776: Line 1,767:
| style='text-align:right'| 325853
| style='text-align:right'| 325853
|-
|-
| 218
| 217
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]
Line 1,785: Line 1,776:
| style='text-align:right'| 31537
| style='text-align:right'| 31537
|-
|-
| 219
| 218
| 2015
| 2015
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5 galGal5]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5 galGal5]
Line 1,794: Line 1,785:
| style='text-align:right'| 795
| style='text-align:right'| 795
|-
|-
| 220
| 219
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galVar1 galVar1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galVar1 galVar1]
Line 1,803: Line 1,794:
| style='text-align:right'| 24866346
| style='text-align:right'| 24866346
|-
|-
| 221
| 220
| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]
Line 1,812: Line 1,803:
| style='text-align:right'| 2520
| style='text-align:right'| 2520
|-
|-
| 223
| 222
| 2009
| 2009
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavGan0 gavGan0]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavGan0 gavGan0]
Line 1,821: Line 1,812:
| style='text-align:right'| 145799649
| style='text-align:right'| 145799649
|-
|-
| 224
| 223
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1 gavSte1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1 gavSte1]
Line 1,830: Line 1,821:
| style='text-align:right'| 2312
| style='text-align:right'| 2312
|-
|-
| 225
| 224
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]
Line 1,839: Line 1,830:
| style='text-align:right'| 51025
| style='text-align:right'| 51025
|-
|-
| 227
| 226
| 2009
| 2009
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor2 gorGor2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor2 gorGor2]
Line 1,848: Line 1,839:
| style='text-align:right'| 499615
| style='text-align:right'| 499615
|-
|-
| 228
| 227
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]
Line 1,857: Line 1,848:
| style='text-align:right'| 533805
| style='text-align:right'| 533805
|-
|-
| 229
| 228
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor4 gorGor4]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor4 gorGor4]
Line 1,866: Line 1,857:
| style='text-align:right'| 982883
| style='text-align:right'| 982883
|-
|-
| 231
| 230
| 2009
| 2009
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1 haeCon1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1 haeCon1]
Line 1,875: Line 1,866:
| style='text-align:right'| 1745
| style='text-align:right'| 1745
|-
|-
| 232
| 231
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2]
Line 1,884: Line 1,875:
| style='text-align:right'| 351011
| style='text-align:right'| 351011
|-
|-
| 233
| 232
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1 halAlb1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1 halAlb1]
Line 1,893: Line 1,884:
| style='text-align:right'| 3807
| style='text-align:right'| 3807
|-
|-
| 234
| 233
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1 halLeu1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1 halLeu1]
Line 1,902: Line 1,893:
| style='text-align:right'| 1676
| style='text-align:right'| 1676
|-
|-
| 235
| 234
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1]
Line 1,911: Line 1,902:
| style='text-align:right'| 374038
| style='text-align:right'| 374038
|-
|-
| 236
| 235
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1]
Line 1,920: Line 1,911:
| style='text-align:right'| 60
| style='text-align:right'| 60
|-
|-
| 237
| 236
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1]
Line 1,929: Line 1,920:
| style='text-align:right'| 2914751
| style='text-align:right'| 2914751
|-
|-
| 238
| 237
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]
Line 1,938: Line 1,929:
| style='text-align:right'| 201552
| style='text-align:right'| 201552
|-
|-
| 239
| 238
| 2009
| 2009
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]
Line 1,944: Line 1,935:
| style='text-align:right'| 2
| style='text-align:right'| 2
| style='text-align:right'| 200
| style='text-align:right'| 200
| style='text-align:right'| count
| style='text-align:right'| 3
| style='text-align:right'|  
| style='text-align:right'| 3000000
|-
|-
| 244
| 243
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38]
Line 1,956: Line 1,947:
| style='text-align:right'| 56689
| style='text-align:right'| 56689
|-
|-
| 253
| 252
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1]
Line 1,965: Line 1,956:
| style='text-align:right'| 569918
| style='text-align:right'| 569918
|-
|-
| 254
| 253
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]
Line 1,974: Line 1,965:
| style='text-align:right'| 504858
| style='text-align:right'| 504858
|-
|-
| 256
| 255
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1 lepDis1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1 lepDis1]
Line 1,983: Line 1,974:
| style='text-align:right'| 229
| style='text-align:right'| 229
|-
|-
| 257
| 256
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1]
Line 1,992: Line 1,983:
| style='text-align:right'| 466733
| style='text-align:right'| 466733
|-
|-
| 258
| 257
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1]
Line 2,001: Line 1,992:
| style='text-align:right'| 1218867
| style='text-align:right'| 1218867
|-
|-
| 259
| 258
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1 letCam1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1 letCam1]
Line 2,010: Line 2,001:
| style='text-align:right'| 739039
| style='text-align:right'| 739039
|-
|-
| 260
| 259
| 1880
| 1880
| linHum0
| linHum0
Line 2,019: Line 2,010:
| style='text-align:right'| 20986
| style='text-align:right'| 20986
|-
|-
| 261
| 260
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1 lipVex1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1 lipVex1]
Line 2,028: Line 2,019:
| style='text-align:right'| 386576
| style='text-align:right'| 386576
|-
|-
| 262
| 261
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1]
Line 2,037: Line 2,028:
| style='text-align:right'| 94547
| style='text-align:right'| 94547
|-
|-
| 263
| 262
| 2005
| 2005
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr1 loxAfr1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr1 loxAfr1]
Line 2,046: Line 2,037:
| style='text-align:right'| 80801
| style='text-align:right'| 80801
|-
|-
| 264
| 263
| 2008
| 2008
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr2 loxAfr2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr2 loxAfr2]
Line 2,055: Line 2,046:
| style='text-align:right'| 180887
| style='text-align:right'| 180887
|-
|-
| 265
| 264
| 2009
| 2009
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]
Line 2,064: Line 2,055:
| style='text-align:right'| 9784
| style='text-align:right'| 9784
|-
|-
| 266
| 265
| 2007
| 2007
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug1 macEug1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug1 macEug1]
Line 2,073: Line 2,064:
| style='text-align:right'| 562759
| style='text-align:right'| 562759
|-
|-
| 267
| 266
| 2009
| 2009
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]
Line 2,082: Line 2,073:
| style='text-align:right'| 1102638
| style='text-align:right'| 1102638
|-
|-
| 268
| 267
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]
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| style='text-align:right'| 1039415
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| 269
| 268
| 2015
| 2015
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macNem1 macNem1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macNem1 macNem1]
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| style='text-align:right'| 834836
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| 270
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| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manPen1 manPen1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manPen1 manPen1]
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| style='text-align:right'| 13090743
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| 271
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| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1 manVit1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1 manVit1]
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| style='text-align:right'| 65245
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| 273
| 272
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1]
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| style='text-align:right'| 682313
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| 274
| 273
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=megLyr1 megLyr1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=megLyr1 megLyr1]
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| style='text-align:right'| 185
| style='text-align:right'| 185
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|-
| 275
| 274
| 2009
| 2009
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]
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| style='text-align:right'| 661041
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|-
| 276
| 275
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5 melGal5]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5 melGal5]
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| style='text-align:right'| 76065
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|-
| 279
| 278
| 2008
| 2008
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2]
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| style='text-align:right'| 513
| style='text-align:right'| 513
|-
|-
| 280
| 279
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]
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| style='text-align:right'| 36796
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|-
| 281
| 280
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1 merNub1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1 merNub1]
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| style='text-align:right'| 722
| style='text-align:right'| 722
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|-
| 282
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| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1]
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| style='text-align:right'| 755166
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|-
| 283
| 282
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1 mesUni1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1 mesUni1]
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| style='text-align:right'| 451
| style='text-align:right'| 451
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| 284
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| 1880
| 1880
| micMur0
| micMur0
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| style='text-align:right'| 749299
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|-
|-
| 285
| 284
| 2007
| 2007
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]
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| style='text-align:right'| 207469
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|-
| 286
| 285
| 2015
| 2015
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2 micMur2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2 micMur2]
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| style='text-align:right'| 267164
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|-
|-
| 287
| 286
| 2017
| 2017
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur3 micMur3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur3 micMur3]
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| style='text-align:right'| 262987
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|-
| 288
| 287
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1]
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| style='text-align:right'| 1507707
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|-
| 289
| 288
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]
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| style='text-align:right'| 51759
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| 293
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| 1880
| 1880
| mm5
| mm5
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| style='text-align:right'| 76884
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|-
| 294
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| 2005
| 2005
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm6 mm6]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm6 mm6]
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| style='text-align:right'| 48212
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|-
| 295
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| 2005
| 2005
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm7 mm7]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm7 mm7]
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| style='text-align:right'| 64491
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|-
| 296
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| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm8 mm8]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm8 mm8]
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| style='text-align:right'| 50878
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|-
| 297
| 296
| 2007
| 2007
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9 mm9]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9 mm9]
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| style='text-align:right'| 51759
| style='text-align:right'| 51759
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|-
| 298
| 297
| 2004
| 2004
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom1 monDom1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom1 monDom1]
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| style='text-align:right'| 11341
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|-
| 299
| 298
| 2005
| 2005
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom2 monDom2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom2 monDom2]
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| style='text-align:right'| 520
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|-
| 300
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| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom4 monDom4]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom4 monDom4]
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| style='text-align:right'| 21732
| style='text-align:right'| 21732
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|-
| 301
| 300
| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]
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| style='text-align:right'| 21732
| style='text-align:right'| 21732
|-
|-
| 302
| 301
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2]
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| style='text-align:right'| 473996
| style='text-align:right'| 473996
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|-
| 303
| 302
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]
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| style='text-align:right'| 286510
| style='text-align:right'| 286510
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|-
| 304
| 303
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoBra1 myoBra1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoBra1 myoBra1]
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| style='text-align:right'| 766318
| style='text-align:right'| 766318
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|-
| 305
| 304
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1]
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| style='text-align:right'| 942238
| style='text-align:right'| 942238
|-
|-
| 306
| 305
| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1 myoLuc1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1 myoLuc1]
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| style='text-align:right'| 125787
| style='text-align:right'| 125787
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|-
| 307
| 306
| 2010
| 2010
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]
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| style='text-align:right'| 3363
| style='text-align:right'| 3363
|-
|-
| 308
| 307
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanGal1 nanGal1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanGal1 nanGal1]
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| style='text-align:right'| 980462
| style='text-align:right'| 980462
|-
|-
| 309
| 308
| 2015
| 2015
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanPar1 nanPar1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanPar1 nanPar1]
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| style='text-align:right'| 2590489
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|-
| 310
| 309
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1]
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| style='text-align:right'| 126885
| style='text-align:right'| 126885
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|-
| 311
| 310
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1]
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| style='text-align:right'| 92887
| style='text-align:right'| 92887
|-
|-
| 312
| 311
| 2007
| 2007
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1 nemVec1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1 nemVec1]
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| style='text-align:right'| 17106
| style='text-align:right'| 17106
|-
|-
| 313
| 312
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1]
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| style='text-align:right'| 665865
| style='text-align:right'| 665865
|-
|-
| 314
| 313
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1 nipNip1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1 nipNip1]
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| style='text-align:right'| 77358
| style='text-align:right'| 77358
|-
|-
| 315
| 314
| 2010
| 2010
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1]
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| style='text-align:right'| 1139352
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|-
| 316
| 315
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2]
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| style='text-align:right'| 1139352
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|-
| 317
| 316
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3]
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| style='text-align:right'| 1139552
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|-
|-
| 318
| 317
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1 notCor1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1 notCor1]
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| style='text-align:right'| 21717
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| 319
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| 1880
| 1880
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| ochPri0
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| style='text-align:right'| 1840608
| style='text-align:right'| 1840608
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|-
| 320
| 319
| 2008
| 2008
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]
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| style='text-align:right'| 1110261
| style='text-align:right'| 1110261
|-
|-
| 321
| 320
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]
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| style='text-align:right'| 499781
| style='text-align:right'| 499781
|-
|-
| 322
| 321
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1]
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| style='text-align:right'| 464548
| style='text-align:right'| 464548
|-
|-
| 323
| 322
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1]
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| style='text-align:right'| 263661
| style='text-align:right'| 263661
|-
|-
| 324
| 323
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1]
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| style='text-align:right'| 18211
| style='text-align:right'| 18211
|-
|-
| 325
| 324
| 2014
| 2014
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1 opiHoa1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1 opiHoa1]
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| style='text-align:right'| 216549
| style='text-align:right'| 216549
|-
|-
| 326
| 325
| 2013
| 2013
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1]
Line 2,559: Line 2,550:
| style='text-align:right'| 357696
| style='text-align:right'| 357696
|-
|-
| 327
| 326
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]
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| style='text-align:right'| 734264
| style='text-align:right'| 734264
|-
|-
| 328
| 327
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]
| style='text-align:right'| 1891
| style='text-align:right'| 93
| style='text-align:right'| 207750
| style='text-align:right'| -1028
| style='text-align:right'| -2027749992
|-
| 329
| 2007
| 2007
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]
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| style='text-align:right'| 148119
| style='text-align:right'| 148119
|-
|-
| 330
| 328
| 2007
| 2007
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 ornAna2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 ornAna2]
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| style='text-align:right'| 148119
| style='text-align:right'| 148119
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|-
| 331
| 329
| 2012
| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1]
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| style='text-align:right'| 691489
| style='text-align:right'| 691489
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|-
| 332
| 330
| 2005
| 2005
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun1 oryCun1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun1 oryCun1]
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| style='text-align:right'| 91832
| style='text-align:right'| 91832
|-
|-
| 333
| 331
| 2009
| 2009
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]
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| style='text-align:right'| 9055
| style='text-align:right'| 9055
|-
|-
| 334
| 332
| 2006
| 2006
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1 oryLat1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1 oryLat1]
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| style='text-align:right'| 215389
| style='text-align:right'| 215389
|-
|-
| 335
| 333
| 2005
| 2005
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]
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| style='text-align:right'| 253399
| style='text-align:right'| 253399
|-
|-
| 337
| 335
| 2011
| 2011
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]
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| style='text-align:right'| 663694
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| 338
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| 2010
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]
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| style='text-align:right'| 1966190
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| 2012
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]
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| 2015
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oxyTri2 oxyTri2]
| style='text-align:right'| 523
| style='text-align:right'| 37
| style='text-align:right'| 30028
| style='text-align:right'| 5
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1]
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| style='text-align:right'| 65178
| style='text-align:right'| 1092
| style='text-align:right'| 702884
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| 340
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1 panPan1]
| style='text-align:right'| 63
| style='text-align:right'| 133
| style='text-align:right'| 11209
| style='text-align:right'| 2
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Revision as of 04:52, 16 April 2017

methods

The measurements are taken from the gapOverlap.bed[.gz] file in /hive/data/genomes/<db>/bed/gapOverlap/gapOverlap.bed[.gz] The score column in the bed file (column 5) is the size of the duplicated sequence. The gap size between the duplicated sequence is calculated from: end - start + 2 * score

table features

The table columns can be sorted, click on the up/down arrow icon in the colunn header. The 'year' is what we have in the dbDb table as indicated from the assembly information files for the date of the assembly. A few do not have dates (set to 1880), and do not have database genome browsers

These ends were found by taking 1,000 bases on each side of any run of N's in the sequence, thus any gap, and aligned with the blat command: 

 blat -q=dna -minIdentity=95 -repMatch=10 upstream.fa downstream.fa

Filtering the PSL output for a perfect match, no mis-matches, and therefore of equal size matching sequence, where the alignment ends exactly at the end of the upstream sequence before the gap and begins exactly at the start of the downstream sequence after the gap.


gapOverlap table statistics

count year dbName item

count

item

median

item

total

gap

median

gap

total

001 2013 CHM1 85 86 10897 88 65164
002 2014 acaChl1 5 17 1250 188 2340
005 2009 ailMel1 48 104 10594 1193 82504
006 2012 allMis1 1151 83 273934 1 74939
007 2013 allSin1 95 125 26114 2265 261774
008 2013 amaVit1 10099 81 1392334 172 2756641
009 2013 anaPla1 31 251 10663 166 94318
010 2014 ancCey1 805 154 171926 1 85569
011 2014 angJap1 4539 91 477038 1 610535
012 2007 anoCar1 20 383.5 8167 537.5 23338
013 2010 anoCar2 25 24 6694 258 26105
014 2003 anoGam1 7 528 3139 1 21041
015 2013 apaSpi1 607 61 34340 1 56961
017 2004 apiMel1 216 5 12150 1 24454
018 2005 apiMel2 133 5 7371 5 19757
019 2005 apiMel3 199 62 16045 5 27354
020 2010 apiMel4 226 52.5 13378 5 24561
021 2008 aplCal1 25 77 3383 1 16863
022 2014 aptFor1 109 147 26798 1575 323838
023 2015 aptMan1 15742 124 4653010 1 3331011
024 2014 aquChr1 4592 43 201248 65 16118238
025 2014 aquChr2 326 82.5 31349 1 143600
026 2013 araMac1 120 48.5 7929 33 27135
027 1880 araTha1 1 289 289 6 60
028 2012 ascSuu1 9 404 3688 555 6481
029 2013 astMex1 1385 78 137888 1 1964877
030 2013 balAcu1 211 149 57860 821 371511
031 2014 balPav1 5 27 1303 216 1098
032 2014 bisBis1 8184 72 712109 1 947641
034 2011 bosMut1 139 83 27917 1274 256420
035 2004 bosTau1 6550 4 289123 5 609155
036 2005 bosTau2 4361 105 564259 5 2525381
037 2006 bosTau3 411 51 38673 5 270212
038 2007 bosTau4 437 53 52814 5 376407
039 2009 bosTau5 435 53 51742 5 376650
040 2009 bosTau6 789 67 463109 1 87080
041 2011 bosTau7 413 55 39706 5 141131
042 2014 bosTau8 789 67 463109 1 87080
043 2009 bosTauMd3 789 67 463109 1 87080
044 2006 braFlo1 31 484 14260 417 12668
045 2008 braFlo2 22 439 8529 411 9064
046 1880 braRap1 12 104 3193 281 47557
047 2007 bruMal1 55 5 6093 1 18780
048 2014 bruMal2 46 124.5 12221 431.5 63506
049 2013 bubBub1 2383 163 395268 1 251657
050 2014 bucRhi1 31 114 5089 78 3263
052 2011 burXyl1 65 601 33110 301 19553
053 2010 caeAng1 414 41 16726 2 1802
054 2012 caeAng2 461 46 19505 2 1495
055 2008 caeJap1 135 58 10431 186 27893
056 2009 caeJap2 765 103 130030 1018 891958
057 1880 caeJap2a 764 103 129273 1018 890958
059 2010 caeJap4 16 98.5 3188 2 1468
060 2007 caePb1 115 44 9160 164 37674
061 2008 caePb2 83 37 3814 222 63681
062 2010 caePb3 89 37 4915 222 74680
063 2005 caeRem1 58 96 10213 133.5 11238
064 2006 caeRem2 58 96 10213 133.5 11238
065 2007 caeRem3 46 5 5760 197.5 14178
066 2007 caeRem4 46 5 5760 197.5 14178
067 2010 caeSp111 4 194.5 760 2 80
068 2012 caeSp51 14 34 730 12.5 894
069 2010 caeSp71 535 47 30250 213 312209
070 2010 caeSp91 26 217.5 7172 8745 180575
071 2014 calAnn1 89 127 16337 1006 168943
072 2007 calJac1 1597 42 129367 182 377725
073 2009 calJac3 1516 43 116646 183.5 452860
074 2013 calMil1 31 123 8335 1 70257
075 2011 camFer1 11 205 2059 129 2031
076 2004 canFam1 12 153 2669 210.5 8118
077 2005 canFam2 32 199.5 8095 1 5245
078 2011 canFam3 34 175.5 8234 1 4545
081 2014 capCar1 4 105 618 48 354
082 2012 capHir1 627 41 71810 1 546475
083 2014 carCri1 4 161 644 210.5 878
084 2005 cavPor2 393 427 164744 1 166667
085 2008 cavPor3 3 145 552 1 961
086 2002 cb1 81 163 20408 145 39126
087 2005 cb2 86 153 21033 163.5 42461
088 2007 cb3 80 148.5 19176 166.5 39580
089 2011 cb4 86 153 20969 151.5 40114
100 2012 cerSim1 1818 68 129697 1 270005
101 2014 chaVoc1 47 2 13700 1514 133699
102 2014 chaVoc2 47 2 13700 1514 133699
103 2013 cheMyd1 129 204 37111 798 277853
104 2012 chiLan1 1183 7 101029 1 267937
105 2013 chlSab1 23634 81 2123928 1 396229
106 2014 chlSab2 23631 81 2123656 1 396199
107 2014 chlUnd1 5 293 1223 129 617
108 2008 choHof1 104 54.5 14520 145.5 33892
109 2012 chrAsi1 3416 76 339291 1 720504
110 2011 chrPic1 7555 79 738667 5 1230115
111 2014 chrPic2 6315 77 629230 206 2593694
112 2002 ci1 28 311.5 8955 5 11060
113 2005 ci2 2 472.5 945 173 346
114 2011 ci3 22 258.5 6455 5 9493
115 2003 cioSav1 8 124 1554 1 2755
116 2005 cioSav2 6 402.5 2394 2 1668
117 2015 colAng1 5690 77 626146 5 1472786
118 2013 colLiv1 19 116 3824 129 32865
119 2014 colStr1 5 161 910 308 1203
120 2012 conCri1 1110 72 108033 1 233431
121 2014 corBra1 41 9 7520 1445 112176
122 2014 corCor1 21 81 2189 1027 27602
123 2013 cotJap1 1122 33 38101 68 67651
124 2013 criGri1 588 217 196516 1481.5 1359815
125 2011 criGriChoV1 213 162 53736 1526 472877
126 2014 cucCan1 113 242 41656 972 203191
127 2014 cynSem1 78 311.5 27891 935.5 165198
128 2014 cypVar1 3240 89 423504 1 2210432
129 2003 danRer1 1280 57 186413 1 322061
130 2014 danRer10 575 174 105525 1 17550
131 2004 danRer2 1150 58 191859 1 223764
132 2005 danRer3 819 58 88143 1 121196
133 2006 danRer4 726 65.5 121967 14 135012
134 2007 danRer5 1559 17 288298 1 155702
135 2008 danRer6 1421 133 225674 1 142101
136 2010 danRer7 1245 164 217595 1 124500
137 2005 dasNov1 55 123 12971 111 31368
138 2008 dasNov2 109 136 25865 1 58752
139 2011 dasNov3 239 46 16270 5 94236
140 2014 dicLab1 275 423 116519 203 134149
141 2008 dipOrd1 219 46 46012 379 102683
142 2013 dirImm1 505 175 132528 2 32073
143 2003 dm1 9 252 2984 2 1237
144 2004 dm2 8 362 2818 2 1217
145 2006 dm3 20 286 4907 1 423940
146 2014 dm6 15 333 4828 1 1340
147 2003 dp2 113 64 11633 1 9049
148 2004 dp3 136 79.5 17354 79.5 14988
149 2006 dp4 183 81 19720 5 18528
150 2012 droAlb1 4360 3 131320 22 152454
151 2004 droAna1 103 252 28853 1 10300
152 2005 droAna2 32 16 7905 701 72786
153 2006 droAna3 35 143 8663 671 75001
154 2013 droBia2 14 116.5 2103 2 294
155 2013 droBip2 26 103.5 3925 2 520
156 2013 droEle2 22 205 4879 2 440
157 2005 droEre1 8 86.5 1545 731 6855
158 2006 droEre2 14 221 4384 239 7433
159 2013 droEug2 17 52 1627 2 237
160 2013 droFic2 11 352 3277 2 220
161 2005 droGri1 17 76 2908 444 11143
162 2006 droGri2 48 60.5 5904 430.5 52107
163 2013 droKik2 12 102 1812 2 1721
164 2013 droMir2 122 72 16465 1 57520
166 2005 droMoj2 22 219.5 7748 366.5 30847
167 2006 droMoj3 16 343 6118 426 29359
168 2005 droPer1 28 402 10502 1 10914
169 2013 droPse3 12 51 1309 86 3307
170 2013 droRho2 35 167 7228 2 1286
171 2005 droSec1 17 399 6822 1 5318
172 2005 droSim1 109 106 23001 298 40703
173 2014 droSim2 104 58 5999 1 1818
174 2013 droSuz1 71 185 16489 1565 196054
175 2013 droTak2 13 102 2070 2 260
176 2004 droVir1 48 328.5 15839 25 16648
177 2005 droVir2 13 232 3421 1415 46365
178 2006 droVir3 12 341 4206 1536.5 45200
179 2006 droWil1 23 248 8712 133 51159
180 2006 droWil2 23 248 8712 133 51159
181 2004 droYak1 65 34 25549 25 24358
182 2005 droYak2 99 17 26922 54 37713
183 2006 droYak3 85 143 20479 1 23713
187 2005 echTel1 89 83 17114 1 22024
188 2012 echTel2 3871 93 620444 1 656358
189 2014 egrGar1 112 213.5 33121 1093.5 229589
190 2013 eidHel1 27 45 1294 1 186
191 2012 eleEdw1 1643 71 141553 1 311199
192 2012 eptFus1 1641 75 188916 1 378407
193 2007 equCab1 17 457 5982 1 6200
194 2007 equCab2 4 160.5 610 1909 18507
195 2014 equPrz1 39 49 5163 49 12408
196 2006 eriEur1 343 435 146738 1 209198
197 2012 eriEur2 3596 7 265454 1 1205265
198 2014 esoLuc1 9785 81 734131 15 1227519
200 2014 eurHel1 2 89.5 179 436 872
202 2013 falChe1 27 206 7614 685 35918
203 2013 falPer1 6 48.5 530 631.5 4836
204 1880 felCat1 1343 353 504058 874 2708782
205 2006 felCat3 1343 353 504058 874 2708782
206 2008 felCat4 9736 503 4582767 1 9398414
207 2011 felCat5 27 72 6437 2 100569
208 2014 felCat8 630 55 50300 1 89447
209 2013 ficAlb2 632 77 75592 40.5 206854
210 2002 fr1 76 155.5 19306 5 16684
211 2004 fr2 5 313 1682 512 2231
212 2011 fr3 6 229 1827 286 2291
213 2014 fulGla1 8 336.5 2583 103.5 1637
214 2010 gadMor1 168 53 11363 27 70748
215 2004 galGal2 114 4 12930 124 17674
216 2006 galGal3 729 37 34199 5 325853
217 2011 galGal4 55 401 22946 1 31537
218 2015 galGal5 1 33 33 795 795
219 2014 galVar1 58964 61 5626241 419 24866346
220 2006 gasAcu1 8 46.5 1970 117.5 2520
222 2009 gavGan0 30236 134 5187944 5 145799649
223 2014 gavSte1 5 164 848 318 2312
224 2012 geoFor1 32 105.5 4877 945.5 51025
226 2009 gorGor2 6585 247 2365617 1 499615
227 2011 gorGor3 6926 246 2475426 1 533805
228 2014 gorGor4 8691 94 1514940 25 982883
230 2009 haeCon1 25 39 1031 1 1745
231 2013 haeCon2 5378 149 831727 55 351011
232 2014 halAlb1 11 126 1936 37 3807
233 2014 halLeu1 14 28 4342 95 1676
234 2011 hapBur1 965 95 135908 2 374038
235 2011 hetBac1 3 228 1282 2 60
236 2011 hetGla1 743 313 285174 1994 2914751
237 2012 hetGla2 595 7 44604 1 201552
238 2009 hg19 1 2 200 3 3000000
243 2013 hg38 12 78 974 44 56689
252 2012 jacJac1 2666 63 196366 1 569918
253 2011 latCha1 2038 77 159059 1 504858
255 2014 lepDis1 1 5 50 229 229
256 2011 lepOcu1 2079 95 232474 1 466733
257 2013 lepWed1 2022 63 135843 1 1218867
258 2013 letCam1 1453 69 123952 1 739039
259 1880 linHum0 179 48 10176 1 20986
260 2013 lipVex1 292 92 66483 985.5 386576
261 2012 loaLoa1 376 382 123384 215 94547
262 2005 loxAfr1 79 44 11426 206 80801
263 2008 loxAfr2 78 165.5 20735 1078 180887
264 2009 loxAfr3 11 45 1924 398 9784
265 2007 macEug1 7319 57 504656 1 562759
266 2009 macEug2 11689 55 752361 5 1102638
267 2013 macFas5 1138 106.5 145024 204.5 1039415
268 2015 macNem1 1828 95 237662 5 834836
269 2014 manPen1 37129 101 5536376 1 13090743
270 2014 manVit1 25 231 8844 1303 65245
272 2012 mayZeb1 1831 95 241336 1 682313
273 2013 megLyr1 33 38 1716 1 185
274 2009 melGal1 834 127 136229 1 661041
275 2014 melGal5 84 181 17431 1 76065
278 2008 melInc2 3 77 211 201 513
279 2011 melUnd1 39 89 5925 41 36796
280 2014 merNub1 2 154.5 309 361 722
281 2013 mesAur1 3589 71 248381 1 755166
282 2014 mesUni1 4 347 1434 124.5 451
283 1880 micMur0 295 256 90483 78 749299
284 2007 micMur1 124 124.5 33320 952.5 207469
285 2015 micMur2 774 9 85250 5 267164
286 2017 micMur3 325 95 73918 5 262987
287 2012 micOch1 6788 65 483435 1 1507707
288 2011 mm10 2 390.5 781 25879.5 51759
292 1880 mm5 204 48.5 30180 1 76884
293 2005 mm6 117 48 17647 1 48212
294 2005 mm7 45 48 5475 1 64491
295 2006 mm8 6 161 1257 162.5 50878
296 2007 mm9 2 390.5 781 25879.5 51759
297 2004 monDom1 18 53.5 1891 127 11341
298 2005 monDom2 5 428 2012 1 520
299 2006 monDom4 9 183 3070 1 21732
300 2006 monDom5 9 183 3070 1 21732
301 2013 musDom2 1284 85 165577 1 473996
302 2011 musFur1 1009 84 107706 44 286510
303 2013 myoBra1 356 119 85889 1109 766318
304 2012 myoDav1 303 151 56967 1283 942238
305 2006 myoLuc1 42 47 6392 1551 125787
306 2010 myoLuc2 7 39 357 41 3363
307 2014 nanGal1 730 126 149781 902.5 980462
308 2015 nanPar1 1716 194 477991 974 2590489
309 2014 nasLar1 614 43 93736 7 126885
310 2013 necAme1 459 54 28538 1 92887
311 2007 nemVec1 25 378 10288 829 17106
312 2011 neoBri1 5040 95 1321574 2 665865
313 2014 nipNip1 41 154 11937 109 77358
314 2010 nomLeu1 859 141 220161 532 1139352
315 2011 nomLeu2 859 141 220161 532 1139352
316 2012 nomLeu3 861 141 220464 519 1139552
317 2014 notCor1 174 91.5 17942 51 21717
318 1880 ochPri0 569 101 138948 1065 1840608
319 2008 ochPri2 313 55 35317 1365 1110261
320 2012 ochPri3 1958 69 148238 1 499781
321 2012 octDeg1 2582 68 231489 1 464548
322 2013 odoRosDiv1 2581 68 180258 5 263661
323 2013 oncVol1 10 89.5 2046 1 18211
324 2014 opiHoa1 80 170.5 23360 1723.5 216549
325 2013 orcOrc1 2677 66 181922 5 357696
326 2011 oreNil1 1903 93 208888 2 734264
327 2007 ornAna1 793 49 70053 103 148119
328 2007 ornAna2 793 49 70053 103 148119
329 2012 oryAfe1 3595 65 293465 1 691489
330 2005 oryCun1 122 278.5 44566 462.5 91832
331 2009 oryCun2 12 44.5 836 446 9055
332 2006 oryLat1 141 144 25310 1 215389
333 2005 oryLat2 141 144 25310 1 253399
335 2011 otoGar3 3569 86 332700 39 663694
336 2010 oviAri1 5934 53 394316 37 1966190
337 2012 oviAri3 149 193 51933 215 178445
338 2015 oxyTri2 523 37 30028 5 25856
339 2013 panHod1 321 129 65178 1092 702884
340 2012 panPan1 63 133 11209 2 22114
Retrieved from "https://genomewiki.ucsc.edu/index.php?title=GapOverlap&oldid=23967"