|
|
| (One intermediate revision by one other user not shown) |
| Line 1: |
Line 1: |
| By default the Gbib update script /root/updateBrowser.sh checks every minute if a flag file on the hgDownload server is more recent than the date of the last update of the Gbib. This check is randomly spread over 30 seconds (crontab + /root/cronUpdate.sh).
| | This page is no longer maintained. |
|
| |
|
| By supplying the parameter "force" to updateBrowser, the box will skip this check and update without checking the flag file.
| | http://genomewiki.ucsc.edu/genecats/index.php/Gbib_auto_updates |
| | |
| If the file on hgDownload is newer than the flagfile, it will start the update (/root/updateBrowser.sh):
| |
| | |
| # Update the update script itself from hgwdev.soe.ucsc.edu/browserbox and also update the hg.conf from there
| |
| # Update all existing /gbdb files
| |
| # Update all mysql files
| |
| # Update all hgcentral files + patch the blat server table
| |
| # Patch the menu to remove hgNear and add hgMirror
| |
| # Place the symlink to /media from htdocs/folders
| |
| # Run hgMirror to hide some tracks on hg19 and remove some searches from hg19
| |
| | |
| updateBrowser.sh also accepts an option: either "alpha", "beta" or "devbox". These pull the CGIs from hgwdev. They don't use rsync but a normal http download which has to be prepared first with "boxPrep alpha|beta|devbox" as qateam on hgwdev.
| |
| | |
| Note that if you have updated to alpha/beta/devbox state once, then the box won't update anymore from hgdownload until the next Sunday, when hgdownload is recreated.
| |
| | |
| Note: Will have to move updateBrowser.sh and hg.conf to hgdownload for release.
| |
| | |
| auto updates can be deactivated on a box with autoUpdateOff and reactivated with autoUpdateOn.
| |
Latest revision as of 11:44, 21 August 2018
