Dm6 124-way Genome size statistics: Difference between revisions
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==see also== | ==see also== | ||
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<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/754/195/GCF_000754195.2_ASM75419v2/ 02]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2 droSim2]</TH> | ||
<TH ALIGN=RIGHT>7,619</TH> | |||
<TD ALIGN=RIGHT>124,963,774</TD><TD ALIGN=RIGHT>124,585,429</TD> | |||
<TD ALIGN=RIGHT>378,345</TD><TD ALIGN=RIGHT>% 21.71</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_000754195.2/ D. simulans]</TD><TH ALIGN=CENTER>75X</TH> | |||
<TH ALIGN=CENTER>23539531</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>82.570%</TD> | |||
<TH ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | |||
<TH ALIGN=CENTER> | |||
<TH ALIGN=CENTER> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[N/A 03]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1 droSec1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>14,730</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>166,577,145</TD><TD ALIGN=RIGHT>157,238,575</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>9,338,570</TD><TD ALIGN=RIGHT>% 21.33</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[N/A D. sechellia]</TD><TH ALIGN=CENTER>4.9X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>2123299</TH> | ||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>82.561%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[N/A 04]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2 droEre2]</TH> | ||
<TH ALIGN=RIGHT>5,124</TH> | |||
<TD ALIGN=RIGHT>152,712,140</TD><TD ALIGN=RIGHT>145,084,019</TD> | |||
<TD ALIGN=RIGHT>7,628,121</TD><TD ALIGN=RIGHT>% 13.05</TD> | |||
<TD ALIGN=CENTER>[N/A D. erecta]</TD><TH ALIGN=CENTER>10.6X</TH> | |||
<TH ALIGN=CENTER>18748788</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>80.023%</TD> | |||
<TH ALIGN=RIGHT>5, | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=CENTER>[ | |||
<TH ALIGN=CENTER> | |||
<TH ALIGN=CENTER> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/975/GCA_000005975.1_dyak_caf1/ 05]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3 droYak3]</TH> | |||
<TH ALIGN=RIGHT>8,123</TH> | |||
<TD ALIGN=RIGHT>165,709,965</TD><TD ALIGN=RIGHT>162,597,893</TD> | |||
<TD ALIGN=RIGHT>3,112,072</TD><TD ALIGN=RIGHT>% 24.51</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000005975.1/ D. yakuba]</TD><TH ALIGN=CENTER>9.1X</TH> | |||
<TH ALIGN=CENTER>21770863</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>80.562%</TD> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/ | |||
<TH ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | |||
<TH ALIGN=CENTER> | |||
<TH ALIGN=CENTER> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/665/GCA_000220665.2_Dfic_2.0/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/665/GCA_000220665.2_Dfic_2.0/ 06]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2 droFic2]</TH> | ||
<TH ALIGN=RIGHT>5,754</TH> | <TH ALIGN=RIGHT>5,754</TH> | ||
<TD ALIGN=RIGHT>152,439,475</TD><TD ALIGN=RIGHT>151,050,198</TD> | <TD ALIGN=RIGHT>152,439,475</TD><TD ALIGN=RIGHT>151,050,198</TD> | ||
Line 156: | Line 92: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/236/325/GCA_000236325.2_Deug_2.0/ 07]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2 droEug2]</TH> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/236/325/GCA_000236325.2_Deug_2.0/ | |||
<TH ALIGN=RIGHT>4,946</TH> | <TH ALIGN=RIGHT>4,946</TH> | ||
<TD ALIGN=RIGHT>156,942,009</TD><TD ALIGN=RIGHT>156,326,779</TD> | <TD ALIGN=RIGHT>156,942,009</TD><TD ALIGN=RIGHT>156,326,779</TD> | ||
Line 192: | Line 101: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/472/105/GCA_000472105.1_Dsuzukii.v01/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/233/415/GCA_000233415.2_Dbia_2.0/ 08]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2 droBia2]</TH> | ||
<TH ALIGN=RIGHT>5,523</TH> | |||
<TD ALIGN=RIGHT>169,378,599</TD><TD ALIGN=RIGHT>168,601,554</TD> | |||
<TD ALIGN=RIGHT>777,045</TD><TD ALIGN=RIGHT>% 26.62</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000233415.2/ D. biarmipes]</TD><TH ALIGN=CENTER>186.9X</TH> | |||
<TH ALIGN=CENTER>3386121</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>75.042%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/472/105/GCA_000472105.1_Dsuzukii.v01/ 09]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1 droSuz1]</TH> | |||
<TH ALIGN=RIGHT>8,680</TH> | <TH ALIGN=RIGHT>8,680</TH> | ||
<TD ALIGN=RIGHT>232,923,092</TD><TD ALIGN=RIGHT>202,303,443</TD> | <TD ALIGN=RIGHT>232,923,092</TD><TD ALIGN=RIGHT>202,303,443</TD> | ||
Line 201: | Line 119: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/235/GCA_000224235.2_Dtak_2.0/ 10]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2 droTak2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>5,733</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>182,106,768</TD><TD ALIGN=RIGHT>181,031,534</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1,075,234</TD><TD ALIGN=RIGHT>% 33.38</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000224235.2/ D. takahashii]</TD><TH ALIGN=CENTER>242.1X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>387676</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>44. | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>75.507%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/195/GCA_000224195.2_Dele_2.0/ 11]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2 droEle2]</TH> | |||
<TH ALIGN=RIGHT>5,429</TH> | |||
<TD ALIGN=RIGHT>171,267,669</TD><TD ALIGN=RIGHT>170,533,328</TD> | |||
<TD ALIGN=RIGHT>734,341</TD><TD ALIGN=RIGHT>% 28.44</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000224195.2/ D. elegans]</TD><TH ALIGN=CENTER>204.9X</TH> | |||
<TH ALIGN=CENTER>1714184</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>75.445%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/236/305/GCA_000236305.2_Drho_2.0/ 12]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2 droRho2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>22,819</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>197,375,704</TD><TD ALIGN=RIGHT>193,888,469</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>3,487,235</TD><TD ALIGN=RIGHT>% 30.85</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000236305.2/ D. rhopaloa]</TD><TH ALIGN=CENTER>214.5X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>45514</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>74.940%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/093/755/GCF_002093755.1_Dser1.0/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/093/755/GCF_002093755.1_Dser1.0/ 13]</TH><TH ALIGN=RIGHT>D_serrata</TH> | ||
<TH ALIGN=RIGHT>1,356</TH> | <TH ALIGN=RIGHT>1,356</TH> | ||
<TD ALIGN=RIGHT>198,035,861</TD><TD ALIGN=RIGHT>198,035,861</TD> | <TD ALIGN=RIGHT>198,035,861</TD><TD ALIGN=RIGHT>198,035,861</TD> | ||
Line 228: | Line 155: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/215/GCA_000224215.2_Dkik_2.0/ 14]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2 droKik2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>5,141</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>164,292,578</TD><TD ALIGN=RIGHT>163,450,299</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>842,279</TD><TD ALIGN=RIGHT>% 30.05</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000224215.2/ D. kikkawai]</TD><TH ALIGN=CENTER>181.7X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>903682</TH> | ||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>70.590%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[N/A 15]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3]</TH> | |||
<TH ALIGN=RIGHT>13,749</TH> | |||
<TD ALIGN=RIGHT>230,993,012</TD><TD ALIGN=RIGHT>213,918,817</TD> | |||
<TD ALIGN=RIGHT>17,074,195</TD><TD ALIGN=RIGHT>% 16.65</TD> | |||
<TD ALIGN=CENTER>[N/A D. ananassae]</TD><TH ALIGN=CENTER>8.9X</TH> | |||
<TH ALIGN=CENTER>4599533</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>67.282%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/236/285/GCA_000236285.2_Dbip_2.0/ 16]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2 droBip2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>5,500</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>167,263,958</TD><TD ALIGN=RIGHT>166,410,816</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>853,142</TD><TD ALIGN=RIGHT>% 29.82</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000236285.2/ D. bipectinata]</TD><TH ALIGN=CENTER>266.3X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>663995</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>65.865%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/245/395/GCA_001245395.1_D._americana_H5_strain_genome_assembly/ 17]</TH><TH ALIGN=RIGHT>D_americana</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>24,251</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>163,286,826</TD><TD ALIGN=RIGHT>162,554,589</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>732,237</TD><TD ALIGN=RIGHT>% 27.87</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001245395.1/ D_americana]</TD><TH ALIGN=CENTER>60X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>20926</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>45.382%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/285/875/GCA_003285875.1_DnovRS1/ 18]</TH><TH ALIGN=RIGHT>D_novamexicana</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>292</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>182,212,895</TD><TD ALIGN=RIGHT>182,212,895</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>0</TD><TD ALIGN=RIGHT>% 32.08</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_003285875.1/ D_novamexicana]</TD><TH ALIGN=CENTER>165X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>3154395</TH> | ||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>48.568%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[N/A | <TR><TH ALIGN=RIGHT>[N/A 19]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3]</TH> | ||
<TH ALIGN=RIGHT>13,530</TH> | <TH ALIGN=RIGHT>13,530</TH> | ||
<TD ALIGN=RIGHT>206,026,697</TD><TD ALIGN=RIGHT>189,205,863</TD> | <TD ALIGN=RIGHT>206,026,697</TD><TD ALIGN=RIGHT>189,205,863</TD> | ||
Line 273: | Line 209: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/086/615/GCA_003086615.1_ASM308661v1/ 20]</TH><TH ALIGN=RIGHT>D_montana</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>63,742</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>183,585,048</TD><TD ALIGN=RIGHT>174,947,209</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>8,637,839</TD><TD ALIGN=RIGHT>% 27.35</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_003086615.1/ D_montana]</TD><TH ALIGN=CENTER>40X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>40647</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>45.270%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/654/025/GCF_001654025.1_ASM165402v1/ 21]</TH><TH ALIGN=RIGHT>D_arizonae</TH> | |||
<TH ALIGN=RIGHT>3,178</TH> | |||
<TD ALIGN=RIGHT>141,386,800</TD><TD ALIGN=RIGHT>134,579,230</TD> | |||
<TD ALIGN=RIGHT>6,807,570</TD><TD ALIGN=RIGHT>% 30.82</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_001654025.1/ D_arizonae]</TD><TH ALIGN=CENTER>52X</TH> | |||
<TH ALIGN=CENTER>26536676</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>41.792%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[N/A 22]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3 droMoj3]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>6,841</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>193,826,310</TD><TD ALIGN=RIGHT>180,207,831</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>13,618,479</TD><TD ALIGN=RIGHT>% 15.52</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[N/A D. mojavensis]</TD><TH ALIGN=CENTER>8.2X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>24764193</TH> | ||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>50.132%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[N/A | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/654/015/GCF_001654015.1_ASM165401v1/ 23]</TH><TH ALIGN=RIGHT>D_navojoa</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>8,053</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>115,885,644</TD><TD ALIGN=RIGHT>114,818,944</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1,066,700</TD><TD ALIGN=RIGHT>% 30.77</TD> | ||
<TD ALIGN=CENTER>[N/A D. | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_001654015.1/ D_navojoa]</TD><TH ALIGN=CENTER>81X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>21835025</TH> | ||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>36.286%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/780/465/GCF_002780465.1_ASM278046v1/ 24]</TH><TH ALIGN=RIGHT>D_hydei</TH> | |||
<TH ALIGN=RIGHT>866</TH> | |||
<TD ALIGN=RIGHT>139,940,643</TD><TD ALIGN=RIGHT>137,880,105</TD> | |||
<TD ALIGN=RIGHT>2,060,538</TD><TD ALIGN=RIGHT>% 28.99</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_002780465.1/ D_hydei]</TD><TH ALIGN=CENTER>170X</TH> | |||
<TH ALIGN=CENTER>754803</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>45.605%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/277/935/GCF_001277935.1_ASM127793v1/ 25]</TH><TH ALIGN=RIGHT>D_busckii</TH> | |||
<TH ALIGN=RIGHT>6</TH> | |||
<TD ALIGN=RIGHT>135,748,557</TD><TD ALIGN=RIGHT>124,583,186</TD> | |||
<TD ALIGN=RIGHT>11,165,371</TD><TD ALIGN=RIGHT>% 33.85</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_001277935.1/ D_busckii]</TD><TH ALIGN=CENTER>172.9X</TH> | |||
<TH ALIGN=CENTER>26871514</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>42.220%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[N/A 26]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2 droGri2]</TH> | |||
<TH ALIGN=RIGHT>17,440</TH> | |||
<TD ALIGN=RIGHT>200,467,819</TD><TD ALIGN=RIGHT>186,090,669</TD> | |||
<TD ALIGN=RIGHT>14,377,150</TD><TD ALIGN=RIGHT>% 13.64</TD> | |||
<TD ALIGN=CENTER>[N/A D. grimshawi]</TD><TH ALIGN=CENTER>7.9X</TH> | |||
<TH ALIGN=CENTER>8399593</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>50.979%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/185/025/GCA_003185025.1_ASM318502v1/ 27]</TH><TH ALIGN=RIGHT>D_athabasca</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>6</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>130,277,606</TD><TD ALIGN=RIGHT>123,530,734</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>6,746,872</TD><TD ALIGN=RIGHT>% 25.05</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_003185025.1/ D_athabasca]</TD><TH ALIGN=CENTER>30X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>25589266</TH> | ||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>54.625%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/765/GCF_000001765.3_Dpse_3.0/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/765/GCF_000001765.3_Dpse_3.0/ 28]</TH><TH ALIGN=RIGHT>D_pseudoobscura_1</TH> | ||
<TH ALIGN=RIGHT>4,790</TH> | <TH ALIGN=RIGHT>4,790</TH> | ||
<TD ALIGN=RIGHT>152,696,384</TD><TD ALIGN=RIGHT>149,027,119</TD> | <TD ALIGN=RIGHT>152,696,384</TD><TD ALIGN=RIGHT>149,027,119</TD> | ||
Line 319: | Line 291: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[N/A | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/269/505/GCA_000269505.2_DroMir_2.2/ 29]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2 droMir2]</TH> | ||
<TH ALIGN=RIGHT>6</TH> | |||
<TD ALIGN=RIGHT>136,728,780</TD><TD ALIGN=RIGHT>132,558,069</TD> | |||
<TD ALIGN=RIGHT>4,170,711</TD><TD ALIGN=RIGHT>% 25.35</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000269505.2/ D. miranda]</TD><TH ALIGN=CENTER>95X</TH> | |||
<TH ALIGN=CENTER>28826359</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>59.308%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[N/A 30]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1]</TH> | |||
<TH ALIGN=RIGHT>12,838</TH> | <TH ALIGN=RIGHT>12,838</TH> | ||
<TD ALIGN=RIGHT>188,374,079</TD><TD ALIGN=RIGHT>175,583,556</TD> | <TD ALIGN=RIGHT>188,374,079</TD><TD ALIGN=RIGHT>175,583,556</TD> | ||
Line 328: | Line 309: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/765/GCA_000001765.2_Dpse_3.0/ 31]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3 droPse3]</TH> | ||
<TH ALIGN=RIGHT>8, | <TH ALIGN=RIGHT>4,791</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>152,711,298</TD><TD ALIGN=RIGHT>149,042,033</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>3,669,265</TD><TD ALIGN=RIGHT>% 25.23</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000001765.2/ D. pseudoobscura]</TD><TH ALIGN=CENTER>44X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>12541198</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>59.836%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/749/795/GCA_002749795.1_Dsub_1.0/ 32]</TH><TH ALIGN=RIGHT>D_subobscura</TH> | |||
<TH ALIGN=RIGHT>2,042</TH> | |||
<TD ALIGN=RIGHT>117,291,146</TD><TD ALIGN=RIGHT>115,310,984</TD> | |||
<TD ALIGN=RIGHT>1,980,162</TD><TD ALIGN=RIGHT>% 22.71</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_002749795.1/ D_subobscura]</TD><TH ALIGN=CENTER>37X</TH> | |||
<TH ALIGN=CENTER>91130</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>55.249%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/217/835/GCF_002217835.1_Dobs_1.0/ 33]</TH><TH ALIGN=RIGHT>D_obscura</TH> | |||
<TH ALIGN=RIGHT>1,935</TH> | |||
<TD ALIGN=RIGHT>181,868,570</TD><TD ALIGN=RIGHT>173,179,687</TD> | |||
<TD ALIGN=RIGHT>8,688,883</TD><TD ALIGN=RIGHT>% 25.96</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_002217835.1/ D_obscura]</TD><TH ALIGN=CENTER>425X</TH> | |||
<TH ALIGN=CENTER>472512</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>61.561%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/752/445/GCA_001752445.1_ZP_IN_1.0/ 34]</TH><TH ALIGN=RIGHT>Zaprionus_indianus</TH> | |||
<TH ALIGN=RIGHT>48,067</TH> | |||
<TD ALIGN=RIGHT>123,674,749</TD><TD ALIGN=RIGHT>120,501,276</TD> | |||
<TD ALIGN=RIGHT>3,173,473</TD><TD ALIGN=RIGHT>% 25.45</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001752445.1/ Zaprionus_indianus]</TD><TH ALIGN=CENTER>36X</TH> | |||
<TH ALIGN=CENTER>4855</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>36.928%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/222/885/GCA_002222885.1_ASM222288v1/ 35]</TH><TH ALIGN=RIGHT>D_nasuta</TH> | |||
<TH ALIGN=RIGHT>46,105</TH> | |||
<TD ALIGN=RIGHT>137,224,182</TD><TD ALIGN=RIGHT>134,313,172</TD> | |||
<TD ALIGN=RIGHT>2,911,010</TD><TD ALIGN=RIGHT>% 30.04</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_002222885.1/ D_nasuta]</TD><TH ALIGN=CENTER>55X</TH> | |||
<TH ALIGN=CENTER>5692</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>39.549%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/298/335/GCA_000298335.1_DroAlb_1.0/ 36]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1 droAlb1]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>26,354</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>253,560,284</TD><TD ALIGN=RIGHT>215,790,107</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>37,770,177</TD><TD ALIGN=RIGHT>% 33.05</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000298335.1/ D. albomicans]</TD><TH ALIGN=CENTER>100X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>23589</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>44.544%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/285/725/GCA_003285725.1_SlebRS1/ 37]</TH><TH ALIGN=RIGHT>Scaptodrosophila_lebanonensis</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>267</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>247,026,876</TD><TD ALIGN=RIGHT>247,026,876</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>0</TD><TD ALIGN=RIGHT>% 32.14</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_003285725.1/ Scaptodrosophila_lebanonensis]</TD><TH ALIGN=CENTER>100X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>7853183</TH> | ||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>42.552%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/415/GCA_001014415.1_ASM101441v1/ 38]</TH><TH ALIGN=RIGHT>Phortica_variegata</TH> | |||
<TH ALIGN=RIGHT>19,473</TH> | |||
<TD ALIGN=RIGHT>155,550,413</TD><TD ALIGN=RIGHT>152,622,190</TD> | |||
<TD ALIGN=RIGHT>2,928,223</TD><TD ALIGN=RIGHT>% 34.86</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014415.1/ Phortica_variegata]</TD><TH ALIGN=CENTER>14.9X</TH> | |||
<TH ALIGN=CENTER>16703</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>24.774%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/925/GCA_000005925.1_dwil_caf1/ 39]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2 droWil2]</TH> | |||
<TH ALIGN=RIGHT>14,838</TH> | |||
<TD ALIGN=RIGHT>235,516,348</TD><TD ALIGN=RIGHT>223,610,028</TD> | |||
<TD ALIGN=RIGHT>11,906,320</TD><TD ALIGN=RIGHT>% 36.41</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000005925.1/ D. willistoni]</TD><TH ALIGN=CENTER>8.4X</TH> | |||
<TH ALIGN=CENTER>4511350</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>51.432%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/935/GCA_001014935.1_ASM101493v1/ 40]</TH><TH ALIGN=RIGHT>Liriomyza_trifolii</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>31,049</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>69,698,627</TD><TD ALIGN=RIGHT>60,916,659</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>8,781,968</TD><TD ALIGN=RIGHT>% 36.26</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014935.1/ Liriomyza_trifolii]</TD><TH ALIGN=CENTER>26X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>2213</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>9.358%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/015/115/GCA_001015115.1_ASM101511v1/ 41]</TH><TH ALIGN=RIGHT>Eutreta_diana</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>139,046</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>233,053,157</TD><TD ALIGN=RIGHT>174,775,853</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>58,277,304</TD><TD ALIGN=RIGHT>% 25.67</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001015115.1/ Eutreta_diana]</TD><TH ALIGN=CENTER>5.2X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>1675</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.427%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/665/GCA_001014665.1_ASM101466v1/ 42]</TH><TH ALIGN=RIGHT>Trupanea_jonesi</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>66,952</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>97,281,263</TD><TD ALIGN=RIGHT>81,013,243</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>16,268,020</TD><TD ALIGN=RIGHT>% 26.44</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014665.1/ Trupanea_jonesi]</TD><TH ALIGN=CENTER>8.4X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>1424</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>7.450%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/017/515/GCA_001017515.1_ASM101751v1/ 43]</TH><TH ALIGN=RIGHT>Tephritis_californica</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>183,295</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>342,257,700</TD><TD ALIGN=RIGHT>272,506,508</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>69,751,192</TD><TD ALIGN=RIGHT>% 30.68</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001017515.1/ Tephritis_californica]</TD><TH ALIGN=CENTER>9.1X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>1969</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.995%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/015/335/GCF_001015335.1_Stomoxys_calcitrans-1.0.1/ 44]</TH><TH ALIGN=RIGHT>Stomoxys_calcitrans</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>12,042</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>971,188,624</TD><TD ALIGN=RIGHT>820,659,366</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>150,529,258</TD><TD ALIGN=RIGHT>% 56.94</TD> | ||
<TD ALIGN=CENTER>[ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_001015335.1/ Stomoxys_calcitrans]</TD><TH ALIGN=CENTER>66X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>504651</TH> | ||
< | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>18.152%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/425/GCA_001014425.1_ASM101442v1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/425/GCA_001014425.1_ASM101442v1/ 45]</TH><TH ALIGN=RIGHT>Trichoceridae_BV_2014</TH> | ||
<TH ALIGN=RIGHT>26,743</TH> | <TH ALIGN=RIGHT>26,743</TH> | ||
<TD ALIGN=RIGHT>41,711,596</TD><TD ALIGN=RIGHT>40,355,645</TD> | <TD ALIGN=RIGHT>41,711,596</TD><TD ALIGN=RIGHT>40,355,645</TD> | ||
Line 409: | Line 444: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/932/985/GCA_001932985.1_200kmer_750.trimmed/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/932/985/GCA_001932985.1_200kmer_750.trimmed/ 46]</TH><TH ALIGN=RIGHT>Proctacanthus_coquilletti</TH> | ||
<TH ALIGN=RIGHT>14,695</TH> | <TH ALIGN=RIGHT>14,695</TH> | ||
<TD ALIGN=RIGHT>208,907,727</TD><TD ALIGN=RIGHT>208,901,127</TD> | <TD ALIGN=RIGHT>208,907,727</TD><TD ALIGN=RIGHT>208,901,127</TD> | ||
Line 418: | Line 453: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/ | <TR><TH ALIGN=RIGHT>[N/A 47]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2 triCas2]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,211</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>199,682,416</TD><TD ALIGN=RIGHT>151,549,963</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>48,132,453</TD><TD ALIGN=RIGHT>% 3.16</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[N/A T. castaneum]</TD><TH ALIGN=CENTER> </TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>13894384</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>10. | <TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT>14.092%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/505/GCA_001014505.1_ASM101450v1/ 48]</TH><TH ALIGN=RIGHT>Chironomus_riparius</TH> | |||
<TH ALIGN=RIGHT>29,677</TH> | |||
<TD ALIGN=RIGHT>154,533,842</TD><TD ALIGN=RIGHT>150,702,381</TD> | |||
<TD ALIGN=RIGHT>3,831,461</TD><TD ALIGN=RIGHT>% 34.64</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014505.1/ Chironomus_riparius]</TD><TH ALIGN=CENTER>17.5X</TH> | |||
<TH ALIGN=CENTER>9868</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>9.683%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/786/525/GCA_000786525.1_CT01/ 49]</TH><TH ALIGN=RIGHT>Chironomus_tentans</TH> | |||
<TH ALIGN=RIGHT>26,025</TH> | |||
<TD ALIGN=RIGHT>213,462,749</TD><TD ALIGN=RIGHT>179,550,640</TD> | |||
<TD ALIGN=RIGHT>33,912,109</TD><TD ALIGN=RIGHT>% 38.84</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000786525.1/ Chironomus_tentans]</TD><TH ALIGN=CENTER>50X</TH> | |||
<TH ALIGN=CENTER>57274</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>9.943%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/005/825/GCA_900005825.1_CLUMA_1.0/ 50]</TH><TH ALIGN=RIGHT>Clunio_marinus</TH> | |||
<TH ALIGN=RIGHT>23,763</TH> | |||
<TD ALIGN=RIGHT>85,491,412</TD><TD ALIGN=RIGHT>84,365,936</TD> | |||
<TD ALIGN=RIGHT>1,125,476</TD><TD ALIGN=RIGHT>% 30.83</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_900005825.1/ Clunio_marinus]</TD><TH ALIGN=CENTER>140X</TH> | |||
<TH ALIGN=CENTER>1871155</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>10.684%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/265/325/GCA_000265325.1_Llon_1.0/ 51]</TH><TH ALIGN=RIGHT>Lutzomyia_longipalpis</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>11,532</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>154,229,266</TD><TD ALIGN=RIGHT>142,771,332</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>11,457,934</TD><TD ALIGN=RIGHT>% 36.09</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000265325.1/ Lutzomyia_longipalpis]</TD><TH ALIGN=CENTER>38.9X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>85093</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>10.883%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/262/795/GCA_000262795.1_Ppap_1.0/ 52]</TH><TH ALIGN=RIGHT>Phlebotomus_papatasi</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>106,826</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>363,767,980</TD><TD ALIGN=RIGHT>345,389,541</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>18,378,439</TD><TD ALIGN=RIGHT>% 45.25</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000262795.1/ Phlebotomus_papatasi]</TD><TH ALIGN=CENTER>15.1X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>27956</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.066%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/335/GCA_001014335.1_ASM101433v1/ 53]</TH><TH ALIGN=RIGHT>Coboldia_fuscipes</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>1,732</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>98,759,061</TD><TD ALIGN=RIGHT>98,471,596</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>287,465</TD><TD ALIGN=RIGHT>% 34.13</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014335.1/ Coboldia_fuscipes]</TD><TH ALIGN=CENTER>53X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>242385</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.908%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/149/185/GCA_000149185.1_Mdes_1.0/ 54]</TH><TH ALIGN=RIGHT>Mayetiola_destructor</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>24,475</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>185,827,756</TD><TD ALIGN=RIGHT>153,138,503</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>32,689,253</TD><TD ALIGN=RIGHT>% 36.15</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000149185.1/ Mayetiola_destructor]</TD><TH ALIGN=CENTER>34X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>756041</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>10.512%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/945/GCA_001014945.1_ASM101494v1/ 55]</TH><TH ALIGN=RIGHT>Clogmia_albipunctata</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>42,886</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>256,248,749</TD><TD ALIGN=RIGHT>246,743,069</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>9,505,680</TD><TD ALIGN=RIGHT>% 43.24</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014945.1/ Clogmia_albipunctata]</TD><TH ALIGN=CENTER>17.8X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>13081</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.098%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ 56]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel4 apiMel4]</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>5,321</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>250,287,000</TD><TD ALIGN=RIGHT>229,121,901</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>21,165,099</TD><TD ALIGN=RIGHT>% 45.35</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/invertebrates/Apis_mellifera/Amel_4.5/ A. mellifera]</TD><TH ALIGN=CENTER> </TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>13219345</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT>8.183%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/789/215/GCF_000789215.1_ASM78921v2/ 57]</TH><TH ALIGN=RIGHT>Bactrocera_dorsalis</TH> | |||
<TH ALIGN=RIGHT>7,166</TH> | |||
<TD ALIGN=RIGHT>414,984,608</TD><TD ALIGN=RIGHT>298,647,366</TD> | |||
<TD ALIGN=RIGHT>116,337,242</TD><TD ALIGN=RIGHT>% 32.02</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_000789215.1/ Bactrocera_dorsalis]</TD><TH ALIGN=CENTER>70X</TH> | |||
<TH ALIGN=CENTER>1206000</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>19.222%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/853/355/GCF_001853355.1_ASM185335v1/ 58]</TH><TH ALIGN=RIGHT>Bactrocera_latifrons</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>3,306</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>462,505,359</TD><TD ALIGN=RIGHT>431,224,478</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>31,280,881</TD><TD ALIGN=RIGHT>% 35.57</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_001853355.1/ Bactrocera_latifrons]</TD><TH ALIGN=CENTER>101X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>974427</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>20.469%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/695/345/GCA_000695345.1_Assembly_2.2_of_Bactrocera_tryoni_genome/ 59]</TH><TH ALIGN=RIGHT>Bactrocera_tryoni</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>31,960</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>519,005,690</TD><TD ALIGN=RIGHT>404,599,357</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>114,406,333</TD><TD ALIGN=RIGHT>% 37.41</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000695345.1/ Bactrocera_tryoni]</TD><TH ALIGN=CENTER>96X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>69551</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>19.523%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/188/975/GCF_001188975.1_gapfilled_joined_lt9474.gt500.covgt10/ 60]</TH><TH ALIGN=RIGHT>Bactrocera_oleae</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>36,198</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>471,780,370</TD><TD ALIGN=RIGHT>420,573,776</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>51,206,594</TD><TD ALIGN=RIGHT>% 37.62</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_001188975.1/ Bactrocera_oleae]</TD><TH ALIGN=CENTER>50X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>139566</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>20.400%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/806/345/GCF_000806345.1_ASM80634v1/ 61]</TH><TH ALIGN=RIGHT>Zeugodacus_cucurbitae</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>5,572</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>374,820,345</TD><TD ALIGN=RIGHT>316,281,465</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>58,538,880</TD><TD ALIGN=RIGHT>% 36.97</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_000806345.1/ Zeugodacus_cucurbitae]</TD><TH ALIGN=CENTER>66.2X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>1399015</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>20.252%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/347/755/GCF_000347755.3_Ccap_2.1/ 62]</TH><TH ALIGN=RIGHT>Ceratitis_capitata</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,355</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>436,490,799</TD><TD ALIGN=RIGHT>435,785,331</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>705,468</TD><TD ALIGN=RIGHT>% 39.93</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_000347755.3/ Ceratitis_capitata]</TD><TH ALIGN=CENTER>152.5X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>1665634</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>19.997%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/015/075/GCA_001015075.1_ASM101507v1/ 63]</TH><TH ALIGN=RIGHT>Cirrula_hians</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>172,401</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>399,685,866</TD><TD ALIGN=RIGHT>361,055,023</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>38,630,843</TD><TD ALIGN=RIGHT>% 37.21</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001015075.1/ Cirrula_hians]</TD><TH ALIGN=CENTER>27X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>2483</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.751%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/675/GCA_001014675.1_ASM101467v1/ 64]</TH><TH ALIGN=RIGHT>Ephydra_gracilis</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>61,434</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>410,872,512</TD><TD ALIGN=RIGHT>367,026,881</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>43,845,631</TD><TD ALIGN=RIGHT>% 34.53</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014675.1/ Ephydra_gracilis]</TD><TH ALIGN=CENTER>9.4X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>11309</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>16.643%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/015/235/GCA_001015235.1_ASM101523v1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/015/235/GCA_001015235.1_ASM101523v1/ 65]</TH><TH ALIGN=RIGHT>Sphyracephala_brevicornis</TH> | ||
<TH ALIGN=RIGHT>135,449</TH> | <TH ALIGN=RIGHT>135,449</TH> | ||
<TD ALIGN=RIGHT>315,521,093</TD><TD ALIGN=RIGHT>266,391,491</TD> | <TD ALIGN=RIGHT>315,521,093</TD><TD ALIGN=RIGHT>266,391,491</TD> | ||
Line 553: | Line 624: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/688/735/GCA_000688735.1_Glossina_austeni-1.0.3/ 66]</TH><TH ALIGN=RIGHT>Glossina_austeni</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,205</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>370,264,922</TD><TD ALIGN=RIGHT>353,470,954</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>16,793,968</TD><TD ALIGN=RIGHT>% 34.37</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000688735.1/ Glossina_austeni]</TD><TH ALIGN=CENTER>62X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>812585</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>16.948%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/515/GCA_001014515.1_ASM101451v1/ 67]</TH><TH ALIGN=RIGHT>Glossina_morsitans_1</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>32,924</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>348,062,779</TD><TD ALIGN=RIGHT>335,305,907</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>12,756,872</TD><TD ALIGN=RIGHT>% 32.41</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014515.1/ Glossina_morsitans_1]</TD><TH ALIGN=CENTER>13.9X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>20491</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>15.733%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/077/435/GCA_001077435.1_ASM107743v1/ 68]</TH><TH ALIGN=RIGHT>Glossina_morsitans_2</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>24,071</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>363,107,242</TD><TD ALIGN=RIGHT>363,107,242</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>0</TD><TD ALIGN=RIGHT>% 33.60</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001077435.1/ Glossina_morsitans_2]</TD><TH ALIGN=CENTER> </TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>49769</TH> | ||
<TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT> | <TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT>16.954%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/688/715/GCA_000688715.1_Glossina_pallidipes-1.0.3/ 69]</TH><TH ALIGN=RIGHT>Glossina_pallidipes</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>1,726</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>357,332,231</TD><TD ALIGN=RIGHT>351,918,494</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>5,413,737</TD><TD ALIGN=RIGHT>% 33.37</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000688715.1/ Glossina_pallidipes]</TD><TH ALIGN=CENTER>78X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>1038751</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>17.101%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/671/735/GCA_000671735.1_Glossina_fuscipes-3.0.2/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/671/735/GCA_000671735.1_Glossina_fuscipes-3.0.2/ 70]</TH><TH ALIGN=RIGHT>Glossina_fuscipes</TH> | ||
<TH ALIGN=RIGHT>2,395</TH> | <TH ALIGN=RIGHT>2,395</TH> | ||
<TD ALIGN=RIGHT>374,774,708</TD><TD ALIGN=RIGHT>361,274,315</TD> | <TD ALIGN=RIGHT>374,774,708</TD><TD ALIGN=RIGHT>361,274,315</TD> | ||
Line 598: | Line 669: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/818/775/GCA_000818775.1_Glossina_palpalis_gambiensis-2.0.1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/818/775/GCA_000818775.1_Glossina_palpalis_gambiensis-2.0.1/ 71]</TH><TH ALIGN=RIGHT>Glossina_palpalis_gambiensis</TH> | ||
<TH ALIGN=RIGHT>3,926</TH> | <TH ALIGN=RIGHT>3,926</TH> | ||
<TD ALIGN=RIGHT>380,104,241</TD><TD ALIGN=RIGHT>346,046,687</TD> | <TD ALIGN=RIGHT>380,104,241</TD><TD ALIGN=RIGHT>346,046,687</TD> | ||
Line 607: | Line 678: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/671/755/GCA_000671755.1_Glossina_brevipalpis_1.0.3/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/671/755/GCA_000671755.1_Glossina_brevipalpis_1.0.3/ 72]</TH><TH ALIGN=RIGHT>Glossina_brevipalpis</TH> | ||
<TH ALIGN=RIGHT>1,651</TH> | <TH ALIGN=RIGHT>1,651</TH> | ||
<TD ALIGN=RIGHT>315,360,362</TD><TD ALIGN=RIGHT>293,464,648</TD> | <TD ALIGN=RIGHT>315,360,362</TD><TD ALIGN=RIGHT>293,464,648</TD> | ||
Line 616: | Line 687: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/017/455/GCA_001017455.1_ASM101745v1/ 73]</TH><TH ALIGN=RIGHT>Neobellieria_bullata</TH> | ||
<TH ALIGN=RIGHT>1, | <TH ALIGN=RIGHT>184,347</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>396,224,597</TD><TD ALIGN=RIGHT>379,790,714</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>16,433,883</TD><TD ALIGN=RIGHT>% 37.56</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001017455.1/ Neobellieria_bullata]</TD><TH ALIGN=CENTER>34X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>2219</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.431%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/017/275/GCA_001017275.1_ASM101727v1/ 74]</TH><TH ALIGN=RIGHT>Calliphora_vicina</TH> | |||
<TH ALIGN=RIGHT>197,510</TH> | |||
<TD ALIGN=RIGHT>459,231,066</TD><TD ALIGN=RIGHT>328,533,602</TD> | |||
<TD ALIGN=RIGHT>130,697,464</TD><TD ALIGN=RIGHT>% 41.41</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001017275.1/ Calliphora_vicina]</TD><TH ALIGN=CENTER>10.4X</TH> | |||
<TH ALIGN=CENTER>2418</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>15.621%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/065/GCF_000699065.1_Lcup_2.0/ 75]</TH><TH ALIGN=RIGHT>Lucilia_cuprina</TH> | |||
<TH ALIGN=RIGHT>5,858</TH> | |||
<TD ALIGN=RIGHT>378,290,214</TD><TD ALIGN=RIGHT>374,710,711</TD> | |||
<TD ALIGN=RIGHT>3,579,503</TD><TD ALIGN=RIGHT>% 50.16</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_000699065.1/ Lucilia_cuprina]</TD><TH ALIGN=CENTER>158.3X</TH> | |||
<TH ALIGN=CENTER>275862</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>20.785%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/835/GCA_001014835.1_ASM101483v1/ 76]</TH><TH ALIGN=RIGHT>Lucilia_sericata</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>92,075</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>319,935,455</TD><TD ALIGN=RIGHT>270,204,707</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>49,730,748</TD><TD ALIGN=RIGHT>% 45.25</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014835.1/ Lucilia_sericata]</TD><TH ALIGN=CENTER>8.5X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>4679</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>15.766%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/875/GCA_001014875.1_ASM101487v1/ 77]</TH><TH ALIGN=RIGHT>Condylostylus_patibulatus</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>211,317</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>451,941,653</TD><TD ALIGN=RIGHT>339,265,009</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>112,676,644</TD><TD ALIGN=RIGHT>% 51.78</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014875.1/ Condylostylus_patibulatus]</TD><TH ALIGN=CENTER>15.8X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>2239</TH> | ||
< | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>8.158%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/735/545/GCA_001735545.1_ASM173554v1/ 78]</TH><TH ALIGN=RIGHT>Phormia_regina</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>192,460</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>549,932,840</TD><TD ALIGN=RIGHT>541,284,364</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>8,648,476</TD><TD ALIGN=RIGHT>% 56.85</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001735545.1/ Phormia_regina]</TD><TH ALIGN=CENTER>44X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>7927</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>20.199%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/047/195/GCA_001047195.1_ASM104719v1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/047/195/GCA_001047195.1_ASM104719v1/ 79]</TH><TH ALIGN=RIGHT>Sarcophagidae_BV_2014</TH> | ||
<TH ALIGN=RIGHT>287,425</TH> | <TH ALIGN=RIGHT>287,425</TH> | ||
<TD ALIGN=RIGHT>494,580,772</TD><TD ALIGN=RIGHT>425,372,192</TD> | <TD ALIGN=RIGHT>494,580,772</TD><TD ALIGN=RIGHT>425,372,192</TD> | ||
Line 661: | Line 750: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/055/125/GCA_003055125.1_ASM305512v1/ 80]</TH><TH ALIGN=RIGHT>Paykullia_maculata</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>147,653</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>422,395,093</TD><TD ALIGN=RIGHT>421,186,575</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1,208,518</TD><TD ALIGN=RIGHT>% 54.05</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_003055125.1/ Paykullia_maculata]</TD><TH ALIGN=CENTER>96X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>7609</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>19.655%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/237/135/GCA_002237135.1_Tel_dalmanni_2A_v1.0/ 81]</TH><TH ALIGN=RIGHT>Teleopsis_dalmanni</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>25,142</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>621,706,043</TD><TD ALIGN=RIGHT>621,310,649</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>395,394</TD><TD ALIGN=RIGHT>% 41.54</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_002237135.1/ Teleopsis_dalmanni]</TD><TH ALIGN=CENTER>107.5X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>66701</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>23.293%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/015/215/GCA_001015215.1_ASM101521v1/ 82]</TH><TH ALIGN=RIGHT>Holcocephala_fusca</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>133,294</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>516,230,974</TD><TD ALIGN=RIGHT>410,754,649</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>105,476,325</TD><TD ALIGN=RIGHT>% 41.12</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001015215.1/ Holcocephala_fusca]</TD><TH ALIGN=CENTER>12.7X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>5217</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>10.901%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/015/175/GCA_001015175.1_ASM101517v1/ 83]</TH><TH ALIGN=RIGHT>Megaselia_abdita</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>121,379</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>412,270,594</TD><TD ALIGN=RIGHT>367,134,505</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>45,136,089</TD><TD ALIGN=RIGHT>% 47.66</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001015175.1/ Megaselia_abdita]</TD><TH ALIGN=CENTER>20.1X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>4558</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>13.126%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/017/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/017/535/GCA_001017535.1_ASM101753v1/ 84]</TH><TH ALIGN=RIGHT>Tipula_oleracea</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>186,864</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>541,697,276</TD><TD ALIGN=RIGHT>360,189,489</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>181,507,787</TD><TD ALIGN=RIGHT>% 32.56</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001017535.1/ Tipula_oleracea]</TD><TH ALIGN=CENTER>6.1X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>3390</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>8.632%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/123/925/GCA_003123925.1_Hi_v1.0/ 85]</TH><TH ALIGN=RIGHT>Haematobia_irritans</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>76,616</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1,143,537,531</TD><TD ALIGN=RIGHT>603,547,513</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>539,990,018</TD><TD ALIGN=RIGHT>% 48.79</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_003123925.1/ Haematobia_irritans]</TD><TH ALIGN=CENTER>1X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>23099</TH> | ||
< | <TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT>14.236%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/371/365/GCA_000371365.1_Musca_domestica-2.0.2/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/371/365/GCA_000371365.1_Musca_domestica-2.0.2/ 86]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2]</TH> | ||
<TH ALIGN=RIGHT>20,487</TH> | <TH ALIGN=RIGHT>20,487</TH> | ||
<TD ALIGN=RIGHT>750,416,349</TD><TD ALIGN=RIGHT>691,732,557</TD> | <TD ALIGN=RIGHT>750,416,349</TD><TD ALIGN=RIGHT>691,732,557</TD> | ||
Line 724: | Line 813: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/815/GCA_001014815.1_ASM101481v1/ 87]</TH><TH ALIGN=RIGHT>Chaoborus_trivitattus</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>80,757</TH> | ||
<TD ALIGN=RIGHT>1, | <TD ALIGN=RIGHT>269,281,158</TD><TD ALIGN=RIGHT>225,218,005</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>44,063,153</TD><TD ALIGN=RIGHT>% 55.51</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014815.1/ Chaoborus_trivitattus]</TD><TH ALIGN=CENTER>11.2X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>4087</TH> | ||
<TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>8.821%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/258/525/GCA_900258525.2_Cson_Genome_version_2.0/ 88]</TH><TH ALIGN=RIGHT>Culicoides_sonorensis</TH> | |||
<TH ALIGN=RIGHT>7,974</TH> | |||
<TD ALIGN=RIGHT>194,177,243</TD><TD ALIGN=RIGHT>189,075,353</TD> | |||
<TD ALIGN=RIGHT>5,101,890</TD><TD ALIGN=RIGHT>% 47.09</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_900258525.2/ Culicoides_sonorensis]</TD><TH ALIGN=CENTER>27X</TH> | |||
<TH ALIGN=CENTER>89502</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.882%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/845/GCA_001014845.1_ASM101484v1/ 89]</TH><TH ALIGN=RIGHT>Mochlonyx_cinctipes</TH> | |||
<TH ALIGN=RIGHT>95,131</TH> | |||
<TD ALIGN=RIGHT>441,264,227</TD><TD ALIGN=RIGHT>396,345,889</TD> | |||
<TD ALIGN=RIGHT>44,918,338</TD><TD ALIGN=RIGHT>% 49.48</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014845.1/ Mochlonyx_cinctipes]</TD><TH ALIGN=CENTER>12.9X</TH> | |||
<TH ALIGN=CENTER>6407</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.607%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/341/915/GCA_000341915.2_ASM34191v2/ 90]</TH><TH ALIGN=RIGHT>Megaselia_scalaris</TH> | |||
<TH ALIGN=RIGHT>231,041</TH> | |||
<TD ALIGN=RIGHT>489,347,612</TD><TD ALIGN=RIGHT>303,723,334</TD> | |||
<TD ALIGN=RIGHT>185,624,278</TD><TD ALIGN=RIGHT>% 42.05</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000341915.2/ Megaselia_scalaris]</TD><TH ALIGN=CENTER> </TH> | |||
<TH ALIGN=CENTER>5716</TH> | |||
<TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT>8.143%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/515/GCF_002204515.2_AaegL5.0/ 91]</TH><TH ALIGN=RIGHT>Aedes_aegypti</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,310</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>1,278,732,104</TD><TD ALIGN=RIGHT>1,278,709,169</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>22,935</TD><TD ALIGN=RIGHT>% 49.04</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_002204515.2/ Aedes_aegypti]</TD><TH ALIGN=CENTER>110X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>409777670</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>14.028%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/876/365/GCF_001876365.2_canu_80X_arrow2.2/ 92]</TH><TH ALIGN=RIGHT>Aedes_albopictus</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,435</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2,247,306,217</TD><TD ALIGN=RIGHT>2,247,306,217</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>0</TD><TD ALIGN=RIGHT>% 56.63</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_001876365.2/ Aedes_albopictus]</TD><TH ALIGN=CENTER>80X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>3303944</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>15.172%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/895/GCA_001014895.1_ASM101489v1/ 93]</TH><TH ALIGN=RIGHT>Hermetia_illucens</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>319,196</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>890,457,210</TD><TD ALIGN=RIGHT>693,082,737</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>197,374,473</TD><TD ALIGN=RIGHT>% 24.43</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014895.1/ Hermetia_illucens]</TD><TH ALIGN=CENTER>8.5X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>3532</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.575%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/687/245/GCF_001687245.1_Rhagoletis_zephyria_1.0/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/687/245/GCF_001687245.1_Rhagoletis_zephyria_1.0/ 94]</TH><TH ALIGN=RIGHT>Rhagoletis_zephyria</TH> | ||
<TH ALIGN=RIGHT>86,670</TH> | <TH ALIGN=RIGHT>86,670</TH> | ||
<TD ALIGN=RIGHT>1,113,962,544</TD><TD ALIGN=RIGHT>1,045,098,753</TD> | <TD ALIGN=RIGHT>1,113,962,544</TD><TD ALIGN=RIGHT>1,045,098,753</TD> | ||
Line 769: | Line 885: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/185/GCF_000209185.1_CulPip1.0/ 95]</TH><TH ALIGN=RIGHT>Culex_quinquefasciatus</TH> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/185/GCF_000209185.1_CulPip1.0/ | |||
<TH ALIGN=RIGHT>3,171</TH> | <TH ALIGN=RIGHT>3,171</TH> | ||
<TD ALIGN=RIGHT>579,042,118</TD><TD ALIGN=RIGHT>539,959,374</TD> | <TD ALIGN=RIGHT>579,042,118</TD><TD ALIGN=RIGHT>539,959,374</TD> | ||
Line 859: | Line 894: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/775/305/GCA_000775305.1_ASM77530v1/ 96]</TH><TH ALIGN=RIGHT>Belgica_antarctica</TH> | ||
<TH ALIGN=RIGHT>10, | <TH ALIGN=RIGHT>4,997</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>89,583,723</TD><TD ALIGN=RIGHT>88,894,437</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>689,286</TD><TD ALIGN=RIGHT>% 21.30</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000775305.1/ Belgica_antarctica]</TD><TH ALIGN=CENTER>150X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>98263</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>10.737%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/015/145/GCA_001015145.1_ASM101514v1/ 97]</TH><TH ALIGN=RIGHT>Eristalis_dimidiata</TH> | |||
<TH ALIGN=RIGHT>146,196</TH> | |||
<TD ALIGN=RIGHT>315,428,702</TD><TD ALIGN=RIGHT>168,946,833</TD> | |||
<TD ALIGN=RIGHT>146,481,869</TD><TD ALIGN=RIGHT>% 17.57</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001015145.1/ Eristalis_dimidiata]</TD><TH ALIGN=CENTER>8X</TH> | |||
<TH ALIGN=CENTER>2265</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>9.259%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/014/575/GCA_001014575.1_ASM101457v1/ 98]</TH><TH ALIGN=RIGHT>Themira_minor</TH> | |||
<TH ALIGN=RIGHT>33,166</TH> | |||
<TD ALIGN=RIGHT>99,885,510</TD><TD ALIGN=RIGHT>92,589,053</TD> | |||
<TD ALIGN=RIGHT>7,296,457</TD><TD ALIGN=RIGHT>% 22.44</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_001014575.1/ Themira_minor]</TD><TH ALIGN=CENTER>21.8X</TH> | |||
<TH ALIGN=CENTER>3571</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>14.206%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/091/835/GCA_002091835.1_ASM209183v1/ 99]</TH><TH ALIGN=RIGHT>A_maculatus</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>50,590</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>462,688,933</TD><TD ALIGN=RIGHT>441,164,621</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>21,524,312</TD><TD ALIGN=RIGHT>% 19.04</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_002091835.1/ A_maculatus]</TD><TH ALIGN=CENTER>93.21X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>198528</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>13.114%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/439/205/GCA_000439205.1_Anili1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/439/205/GCA_000439205.1_Anili1/ 100]</TH><TH ALIGN=RIGHT>A_nili</TH> | ||
<TH ALIGN=RIGHT>51,048</TH> | <TH ALIGN=RIGHT>51,048</TH> | ||
<TD ALIGN=RIGHT>98,320,046</TD><TD ALIGN=RIGHT>98,174,933</TD> | <TD ALIGN=RIGHT>98,320,046</TD><TD ALIGN=RIGHT>98,174,933</TD> | ||
Line 886: | Line 939: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/375/GCA_000473375.1_Anop_culi_species_A-37_1_V1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/441/895/GCA_000441895.2_AS2/ 101]</TH><TH ALIGN=RIGHT>A_sinensis</TH> | ||
<TH ALIGN=RIGHT>9,592</TH> | |||
<TD ALIGN=RIGHT>220,777,669</TD><TD ALIGN=RIGHT>214,509,976</TD> | |||
<TD ALIGN=RIGHT>6,267,693</TD><TD ALIGN=RIGHT>% 18.43</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000441895.2/ A_sinensis]</TD><TH ALIGN=CENTER>30X</TH> | |||
<TH ALIGN=CENTER>814231</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.718%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/375/GCA_000473375.1_Anop_culi_species_A-37_1_V1/ 102]</TH><TH ALIGN=RIGHT>A_culicifacies</TH> | |||
<TH ALIGN=RIGHT>16,162</TH> | <TH ALIGN=RIGHT>16,162</TH> | ||
<TD ALIGN=RIGHT>202,998,806</TD><TD ALIGN=RIGHT>187,158,781</TD> | <TD ALIGN=RIGHT>202,998,806</TD><TD ALIGN=RIGHT>187,158,781</TD> | ||
Line 895: | Line 957: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/025/GCA_000349025.1_Anop_mini_MINIMUS1_V1/ 103]</TH><TH ALIGN=RIGHT>A_minimus</TH> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/025/GCA_000349025.1_Anop_mini_MINIMUS1_V1/ | |||
<TH ALIGN=RIGHT>678</TH> | <TH ALIGN=RIGHT>678</TH> | ||
<TD ALIGN=RIGHT>201,793,324</TD><TD ALIGN=RIGHT>186,406,809</TD> | <TD ALIGN=RIGHT>201,793,324</TD><TD ALIGN=RIGHT>186,406,809</TD> | ||
Line 913: | Line 966: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/085/GCA_000349085.1_Anop_fune_FUMOZ_V1/ 104]</TH><TH ALIGN=RIGHT>A_funestus</TH> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/085/GCA_000349085.1_Anop_fune_FUMOZ_V1/ | |||
<TH ALIGN=RIGHT>1,392</TH> | <TH ALIGN=RIGHT>1,392</TH> | ||
<TD ALIGN=RIGHT>225,223,604</TD><TD ALIGN=RIGHT>190,015,440</TD> | <TD ALIGN=RIGHT>225,223,604</TD><TD ALIGN=RIGHT>190,015,440</TD> | ||
Line 949: | Line 975: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/165/GCA_000349165.1_Anop_chri_ACHKN1017_V1/ 105]</TH><TH ALIGN=RIGHT>A_christyi</TH> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/165/GCA_000349165.1_Anop_chri_ACHKN1017_V1/ | |||
<TH ALIGN=RIGHT>30,369</TH> | <TH ALIGN=RIGHT>30,369</TH> | ||
<TD ALIGN=RIGHT>172,658,580</TD><TD ALIGN=RIGHT>169,987,185</TD> | <TD ALIGN=RIGHT>172,658,580</TD><TD ALIGN=RIGHT>169,987,185</TD> | ||
Line 976: | Line 984: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/185/GCA_000349185.1_Anop_arab_DONG5_A_V1/ 106]</TH><TH ALIGN=RIGHT>A_arabiensis</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>1,214</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>246,567,867</TD><TD ALIGN=RIGHT>211,443,117</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>35,124,750</TD><TD ALIGN=RIGHT>% 19.98</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000349185.1/ A_arabiensis]</TD><TH ALIGN=CENTER>100X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>5604218</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.738%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/150/765/GCA_000150765.1_m5/ 107]</TH><TH ALIGN=RIGHT>A_coluzzii</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>10,521</TH> | ||
<TD ALIGN=RIGHT>224, | <TD ALIGN=RIGHT>224,417,174</TD><TD ALIGN=RIGHT>209,529,067</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>14,888,107</TD><TD ALIGN=RIGHT>% 20.43</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000150765.1/ A_coluzzii]</TD><TH ALIGN=CENTER>8X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>4437438</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12. | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.160%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/065/GCA_000349065.1_Anop_quad_QUAD4_A_V1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/065/GCA_000349065.1_Anop_quad_QUAD4_A_V1/ 108]</TH><TH ALIGN=RIGHT>A_quadriannulatus</TH> | ||
<TH ALIGN=RIGHT>2,823</TH> | <TH ALIGN=RIGHT>2,823</TH> | ||
<TD ALIGN=RIGHT>283,828,998</TD><TD ALIGN=RIGHT>208,966,669</TD> | <TD ALIGN=RIGHT>283,828,998</TD><TD ALIGN=RIGHT>208,966,669</TD> | ||
Line 1,003: | Line 1,011: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/525/GCA_000473525.2_Anop_mela_CM1001059_A_V2/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/845/GCA_000473845.2_Anop_meru_MAF_V1/ 109]</TH><TH ALIGN=RIGHT>A_merus</TH> | ||
<TH ALIGN=RIGHT>2,027</TH> | |||
<TD ALIGN=RIGHT>288,048,996</TD><TD ALIGN=RIGHT>217,320,349</TD> | |||
<TD ALIGN=RIGHT>70,728,647</TD><TD ALIGN=RIGHT>% 20.13</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000473845.2/ A_merus]</TD><TH ALIGN=CENTER>147X</TH> | |||
<TH ALIGN=CENTER>1489982</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.901%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/575/GCF_000005575.2_AgamP3/ 110]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoGam3 anoGam3]</TH> | |||
<TH ALIGN=RIGHT>8,041</TH> | |||
<TD ALIGN=RIGHT>264,974,304</TD><TD ALIGN=RIGHT>252,401,356</TD> | |||
<TD ALIGN=RIGHT>12,572,948</TD><TD ALIGN=RIGHT>% 14.28</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_000005575.2/ A. gambiae]</TD><TH ALIGN=CENTER>6.5X</TH> | |||
<TH ALIGN=CENTER>49364325</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>13.776%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/575/GCF_000005575.2_AgamP3/ 111]</TH><TH ALIGN=RIGHT>A_gambiae_1</TH> | |||
<TH ALIGN=RIGHT>8,090</TH> | |||
<TD ALIGN=RIGHT>265,027,044</TD><TD ALIGN=RIGHT>252,454,096</TD> | |||
<TD ALIGN=RIGHT>12,572,948</TD><TD ALIGN=RIGHT>% 21.75</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCF_000005575.2/ A_gambiae_1]</TD><TH ALIGN=CENTER> </TH> | |||
<TH ALIGN=CENTER>49364325</TH> | |||
<TD ALIGN=CENTER>Net</TD><TD ALIGN=RIGHT>13.328%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/525/GCA_000473525.2_Anop_mela_CM1001059_A_V2/ 112]</TH><TH ALIGN=RIGHT>A_melas</TH> | |||
<TH ALIGN=RIGHT>20,229</TH> | <TH ALIGN=RIGHT>20,229</TH> | ||
<TD ALIGN=RIGHT>224,162,116</TD><TD ALIGN=RIGHT>203,428,649</TD> | <TD ALIGN=RIGHT>224,162,116</TD><TD ALIGN=RIGHT>203,428,649</TD> | ||
Line 1,012: | Line 1,047: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/448/975/GCA_003448975.1_ASM344897v1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/105/GCA_000349105.1_Anop_epir_epiroticus2_V1/ 113]</TH><TH ALIGN=RIGHT>A_epiroticus</TH> | ||
<TH ALIGN=RIGHT>2,673</TH> | |||
<TD ALIGN=RIGHT>223,486,714</TD><TD ALIGN=RIGHT>202,632,179</TD> | |||
<TD ALIGN=RIGHT>20,854,535</TD><TD ALIGN=RIGHT>% 18.82</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000349105.1/ A_epiroticus]</TD><TH ALIGN=CENTER>49X</TH> | |||
<TH ALIGN=CENTER>366526</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.650%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/091/845/GCA_002091845.1_ASM209184v1/ 114]</TH><TH ALIGN=RIGHT>A_cracens</TH> | |||
<TH ALIGN=RIGHT>34,365</TH> | |||
<TD ALIGN=RIGHT>326,465,827</TD><TD ALIGN=RIGHT>325,760,517</TD> | |||
<TD ALIGN=RIGHT>705,310</TD><TD ALIGN=RIGHT>% 17.26</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_002091845.1/ A_cracens]</TD><TH ALIGN=CENTER>212.09X</TH> | |||
<TH ALIGN=CENTER>153896</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.692%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/145/GCA_000349145.1_Anop_diru_WRAIR2_V1/ 115]</TH><TH ALIGN=RIGHT>A_dirus</TH> | |||
<TH ALIGN=RIGHT>1,266</TH> | |||
<TD ALIGN=RIGHT>216,307,690</TD><TD ALIGN=RIGHT>197,741,572</TD> | |||
<TD ALIGN=RIGHT>18,566,118</TD><TD ALIGN=RIGHT>% 17.15</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000349145.1/ A_dirus]</TD><TH ALIGN=CENTER>184X</TH> | |||
<TH ALIGN=CENTER>6906475</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.779%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/448/975/GCA_003448975.1_ASM344897v1/ 116]</TH><TH ALIGN=RIGHT>A_stephensi</TH> | |||
<TH ALIGN=RIGHT>227</TH> | <TH ALIGN=RIGHT>227</TH> | ||
<TD ALIGN=RIGHT>196,058,862</TD><TD ALIGN=RIGHT>181,678,847</TD> | <TD ALIGN=RIGHT>196,058,862</TD><TD ALIGN=RIGHT>181,678,847</TD> | ||
Line 1,021: | Line 1,083: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/956/255/GCA_000956255.1_ASM95625v1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/445/GCA_000473445.2_Anop_fara_FAR1_V2/ 117]</TH><TH ALIGN=RIGHT>A_farauti</TH> | ||
<TH ALIGN=RIGHT>310</TH> | |||
<TD ALIGN=RIGHT>183,103,254</TD><TD ALIGN=RIGHT>175,822,780</TD> | |||
<TD ALIGN=RIGHT>7,280,474</TD><TD ALIGN=RIGHT>% 18.58</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000473445.2/ A_farauti]</TD><TH ALIGN=CENTER>233X</TH> | |||
<TH ALIGN=CENTER>12895223</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.374%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/956/275/GCA_000956275.1_ASM95627v1/ 118]</TH><TH ALIGN=RIGHT>A_koliensis</TH> | |||
<TH ALIGN=RIGHT>41,925</TH> | |||
<TD ALIGN=RIGHT>151,110,088</TD><TD ALIGN=RIGHT>151,110,062</TD> | |||
<TD ALIGN=RIGHT>26</TD><TD ALIGN=RIGHT>% 18.49</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000956275.1/ A_koliensis]</TD><TH ALIGN=CENTER>39X</TH> | |||
<TH ALIGN=CENTER>4659</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>10.841%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/956/215/GCA_000956215.1_ASM95621v1/ 119]</TH><TH ALIGN=RIGHT>A_farauti_No4</TH> | |||
<TH ALIGN=RIGHT>14,407</TH> | |||
<TD ALIGN=RIGHT>146,379,160</TD><TD ALIGN=RIGHT>146,379,155</TD> | |||
<TD ALIGN=RIGHT>5</TD><TD ALIGN=RIGHT>% 18.16</TD> | |||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000956215.1/ A_farauti_No4]</TD><TH ALIGN=CENTER>131X</TH> | |||
<TH ALIGN=CENTER>16229</TH> | |||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.042%</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>loose</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/956/255/GCA_000956255.1_ASM95625v1/ 120]</TH><TH ALIGN=RIGHT>A_punctulatus</TH> | |||
<TH ALIGN=RIGHT>20,774</TH> | <TH ALIGN=RIGHT>20,774</TH> | ||
<TD ALIGN=RIGHT>146,157,495</TD><TD ALIGN=RIGHT>146,157,493</TD> | <TD ALIGN=RIGHT>146,157,495</TD><TD ALIGN=RIGHT>146,157,493</TD> | ||
Line 1,030: | Line 1,119: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/505/GCA_000473505.1_Anop_atro_EBRO_V1/ 121]</TH><TH ALIGN=RIGHT>A_atroparvus</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>1,371</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>224,290,125</TD><TD ALIGN=RIGHT>188,952,560</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>35,337,565</TD><TD ALIGN=RIGHT>% 15.90</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000473505.1/ A_atroparvus]</TD><TH ALIGN=CENTER>98X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>9206694</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12. | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>12.705%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/211/455/GCA_000211455.3_A_darlingi_v1/ 122]</TH><TH ALIGN=RIGHT>A_darlingi</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>2,220</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>136,935,538</TD><TD ALIGN=RIGHT>136,907,773</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>27,765</TD><TD ALIGN=RIGHT>% 16.78</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000211455.3/ A_darlingi]</TD><TH ALIGN=CENTER>20X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>115072</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.465%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/846/955/GCA_002846955.1_A_aquasalis_v1.0/ 123]</TH><TH ALIGN=RIGHT>A_aquasalis</TH> | ||
<TH ALIGN=RIGHT> | <TH ALIGN=RIGHT>16,504</TH> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>162,944,031</TD><TD ALIGN=RIGHT>162,357,109</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>586,922</TD><TD ALIGN=RIGHT>% 16.95</TD> | ||
<TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/ | <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/assembly/GCA_002846955.1/ A_aquasalis]</TD><TH ALIGN=CENTER>340X</TH> | ||
<TH ALIGN=CENTER> | <TH ALIGN=CENTER>53365</TH> | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.625%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/125/GCA_000349125.2_Anop_albi_ALBI9_A_V2/ 124]</TH><TH ALIGN=RIGHT>A_albimanus</TH> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/349/125/GCA_000349125.2_Anop_albi_ALBI9_A_V2/ | |||
<TH ALIGN=RIGHT>201</TH> | <TH ALIGN=RIGHT>201</TH> | ||
<TD ALIGN=RIGHT>173,339,239</TD><TD ALIGN=RIGHT>163,494,474</TD> | <TD ALIGN=RIGHT>173,339,239</TD><TD ALIGN=RIGHT>163,494,474</TD> | ||
Line 1,074: | Line 1,154: | ||
<TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.850%</TD> | <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>11.850%</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
</TABLE> | </TABLE> |
Latest revision as of 00:28, 5 January 2019
see also
- D. melanogaster 124-way Dm6 124-way conservation alignment
- D. melanogaster 124-way Dm6 124-way conservation lastz parameters
- all other UCSC Multiple Alignments
statistics collected from UCSC 2bit files
- The external link in the first column goes to the FTP location where the genome sequence was obtained
- The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
- N bases == unknown bases in the assembly marked by "N"
- non-N bases == called bases in the assembly
- total size == all bases in assembly, N and non-N
- The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
- The common name external links go to information pages for this genome
- The coverage numbers are taken directly from information README files from the sequencing center
- The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
do not edit, automatically generated table
order count/ ftp src |
ucsc db name/ genome-preview |
chrom count |
total size |
non-N bases |
N base count |
% masked | common name/ src info |
coverage | N50 chrom.sizes |
alignment type | % of dm6 matched (chainLink table) |
chain minScore |
chain linearGap |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | dm6 | 1,870 | 143,726,002 | 142,573,024 | 1,152,978 | % 21.07 | D. melanogaster | 25286936 | N/A | 98.737% | N/A | loose | |
02 | droSim2 | 7,619 | 124,963,774 | 124,585,429 | 378,345 | % 21.71 | D. simulans | 75X | 23539531 | SyntenicNet | 82.570% | 3000 | loose |
[N/A 03] | droSec1 | 14,730 | 166,577,145 | 157,238,575 | 9,338,570 | % 21.33 | [N/A D. sechellia] | 4.9X | 2123299 | SyntenicNet | 82.561% | 3000 | loose |
[N/A 04] | droEre2 | 5,124 | 152,712,140 | 145,084,019 | 7,628,121 | % 13.05 | [N/A D. erecta] | 10.6X | 18748788 | SyntenicNet | 80.023% | 3000 | loose |
05 | droYak3 | 8,123 | 165,709,965 | 162,597,893 | 3,112,072 | % 24.51 | D. yakuba | 9.1X | 21770863 | SyntenicNet | 80.562% | 3000 | loose |
06 | droFic2 | 5,754 | 152,439,475 | 151,050,198 | 1,389,277 | % 25.24 | D. ficusphila | 208.7X | 1050541 | Net | 74.740% | 3000 | loose |
07 | droEug2 | 4,946 | 156,942,009 | 156,326,779 | 615,230 | % 26.40 | D. eugracilis | 218.1X | 976885 | Net | 75.265% | 3000 | loose |
08 | droBia2 | 5,523 | 169,378,599 | 168,601,554 | 777,045 | % 26.62 | D. biarmipes | 186.9X | 3386121 | SyntenicNet | 75.042% | 3000 | loose |
09 | droSuz1 | 8,680 | 232,923,092 | 202,303,443 | 30,619,649 | % 27.75 | D. suzukii | 195X | 388966 | Net | 74.591% | 3000 | loose |
10 | droTak2 | 5,733 | 182,106,768 | 181,031,534 | 1,075,234 | % 33.38 | D. takahashii | 242.1X | 387676 | Net | 75.507% | 3000 | loose |
11 | droEle2 | 5,429 | 171,267,669 | 170,533,328 | 734,341 | % 28.44 | D. elegans | 204.9X | 1714184 | Net | 75.445% | 3000 | loose |
12 | droRho2 | 22,819 | 197,375,704 | 193,888,469 | 3,487,235 | % 30.85 | D. rhopaloa | 214.5X | 45514 | Net | 74.940% | 3000 | loose |
13 | D_serrata | 1,356 | 198,035,861 | 198,035,861 | 0 | % 35.57 | D_serrata | 63X | 942627 | Net | 70.419% | 1000 | loose |
14 | droKik2 | 5,141 | 164,292,578 | 163,450,299 | 842,279 | % 30.05 | D. kikkawai | 181.7X | 903682 | Net | 70.590% | 3000 | loose |
[N/A 15] | droAna3 | 13,749 | 230,993,012 | 213,918,817 | 17,074,195 | % 16.65 | [N/A D. ananassae] | 8.9X | 4599533 | SyntenicNet | 67.282% | 3000 | loose |
16 | droBip2 | 5,500 | 167,263,958 | 166,410,816 | 853,142 | % 29.82 | D. bipectinata | 266.3X | 663995 | Net | 65.865% | 3000 | loose |
17 | D_americana | 24,251 | 163,286,826 | 162,554,589 | 732,237 | % 27.87 | D_americana | 60X | 20926 | Net | 45.382% | 1000 | loose |
18 | D_novamexicana | 292 | 182,212,895 | 182,212,895 | 0 | % 32.08 | D_novamexicana | 165X | 3154395 | SyntenicNet | 48.568% | 1000 | loose |
[N/A 19] | droVir3 | 13,530 | 206,026,697 | 189,205,863 | 16,820,834 | % 18.73 | [N/A D. virilis] | 8X | 10161210 | SyntenicNet | 51.937% | 3000 | loose |
20 | D_montana | 63,742 | 183,585,048 | 174,947,209 | 8,637,839 | % 27.35 | D_montana | 40X | 40647 | Net | 45.270% | 1000 | loose |
21 | D_arizonae | 3,178 | 141,386,800 | 134,579,230 | 6,807,570 | % 30.82 | D_arizonae | 52X | 26536676 | SyntenicNet | 41.792% | 1000 | loose |
[N/A 22] | droMoj3 | 6,841 | 193,826,310 | 180,207,831 | 13,618,479 | % 15.52 | [N/A D. mojavensis] | 8.2X | 24764193 | SyntenicNet | 50.132% | 3000 | loose |
23 | D_navojoa | 8,053 | 115,885,644 | 114,818,944 | 1,066,700 | % 30.77 | D_navojoa | 81X | 21835025 | SyntenicNet | 36.286% | 1000 | loose |
24 | D_hydei | 866 | 139,940,643 | 137,880,105 | 2,060,538 | % 28.99 | D_hydei | 170X | 754803 | Net | 45.605% | 1000 | loose |
25 | D_busckii | 6 | 135,748,557 | 124,583,186 | 11,165,371 | % 33.85 | D_busckii | 172.9X | 26871514 | SyntenicNet | 42.220% | 1000 | loose |
[N/A 26] | droGri2 | 17,440 | 200,467,819 | 186,090,669 | 14,377,150 | % 13.64 | [N/A D. grimshawi] | 7.9X | 8399593 | SyntenicNet | 50.979% | 3000 | loose |
27 | D_athabasca | 6 | 130,277,606 | 123,530,734 | 6,746,872 | % 25.05 | D_athabasca | 30X | 25589266 | SyntenicNet | 54.625% | 1000 | loose |
28 | D_pseudoobscura_1 | 4,790 | 152,696,384 | 149,027,119 | 3,669,265 | % 23.67 | D_pseudoobscura_1 | 24 X | 12541198 | Net | 59.426% | 1000 | loose |
29 | droMir2 | 6 | 136,728,780 | 132,558,069 | 4,170,711 | % 25.35 | D. miranda | 95X | 28826359 | SyntenicNet | 59.308% | 3000 | loose |
[N/A 30] | droPer1 | 12,838 | 188,374,079 | 175,583,556 | 12,790,523 | % 14.60 | [N/A D. persimilis] | 4.1X | 1869541 | Net | 59.049% | 3000 | loose |
31 | droPse3 | 4,791 | 152,711,298 | 149,042,033 | 3,669,265 | % 25.23 | D. pseudoobscura | 44X | 12541198 | SyntenicNet | 59.836% | 3000 | loose |
32 | D_subobscura | 2,042 | 117,291,146 | 115,310,984 | 1,980,162 | % 22.71 | D_subobscura | 37X | 91130 | Net | 55.249% | 1000 | loose |
33 | D_obscura | 1,935 | 181,868,570 | 173,179,687 | 8,688,883 | % 25.96 | D_obscura | 425X | 472512 | Net | 61.561% | 1000 | loose |
34 | Zaprionus_indianus | 48,067 | 123,674,749 | 120,501,276 | 3,173,473 | % 25.45 | Zaprionus_indianus | 36X | 4855 | Net | 36.928% | 1000 | loose |
35 | D_nasuta | 46,105 | 137,224,182 | 134,313,172 | 2,911,010 | % 30.04 | D_nasuta | 55X | 5692 | Net | 39.549% | 1000 | loose |
36 | droAlb1 | 26,354 | 253,560,284 | 215,790,107 | 37,770,177 | % 33.05 | D. albomicans | 100X | 23589 | Net | 44.544% | 3000 | loose |
37 | Scaptodrosophila_lebanonensis | 267 | 247,026,876 | 247,026,876 | 0 | % 32.14 | Scaptodrosophila_lebanonensis | 100X | 7853183 | Net | 42.552% | 1000 | loose |
38 | Phortica_variegata | 19,473 | 155,550,413 | 152,622,190 | 2,928,223 | % 34.86 | Phortica_variegata | 14.9X | 16703 | Net | 24.774% | 1000 | loose |
39 | droWil2 | 14,838 | 235,516,348 | 223,610,028 | 11,906,320 | % 36.41 | D. willistoni | 8.4X | 4511350 | SyntenicNet | 51.432% | 3000 | loose |
40 | Liriomyza_trifolii | 31,049 | 69,698,627 | 60,916,659 | 8,781,968 | % 36.26 | Liriomyza_trifolii | 26X | 2213 | Net | 9.358% | 1000 | loose |
41 | Eutreta_diana | 139,046 | 233,053,157 | 174,775,853 | 58,277,304 | % 25.67 | Eutreta_diana | 5.2X | 1675 | Net | 11.427% | 1000 | loose |
42 | Trupanea_jonesi | 66,952 | 97,281,263 | 81,013,243 | 16,268,020 | % 26.44 | Trupanea_jonesi | 8.4X | 1424 | Net | 7.450% | 1000 | loose |
43 | Tephritis_californica | 183,295 | 342,257,700 | 272,506,508 | 69,751,192 | % 30.68 | Tephritis_californica | 9.1X | 1969 | Net | 12.995% | 1000 | loose |
44 | Stomoxys_calcitrans | 12,042 | 971,188,624 | 820,659,366 | 150,529,258 | % 56.94 | Stomoxys_calcitrans | 66X | 504651 | Net | 18.152% | 1000 | loose |
45 | Trichoceridae_BV_2014 | 26,743 | 41,711,596 | 40,355,645 | 1,355,951 | % 37.74 | Trichoceridae_BV_2014 | 40X | 1520 | Net | 3.974% | 1000 | loose |
46 | Proctacanthus_coquilletti | 14,695 | 208,907,727 | 208,901,127 | 6,600 | % 35.51 | Proctacanthus_coquilletti | 132X | 862345 | Net | 14.594% | 1000 | loose |
[N/A 47] | triCas2 | 2,211 | 199,682,416 | 151,549,963 | 48,132,453 | % 3.16 | [N/A T. castaneum] | 13894384 | Net | 14.092% | 3000 | loose | |
48 | Chironomus_riparius | 29,677 | 154,533,842 | 150,702,381 | 3,831,461 | % 34.64 | Chironomus_riparius | 17.5X | 9868 | Net | 9.683% | 1000 | loose |
49 | Chironomus_tentans | 26,025 | 213,462,749 | 179,550,640 | 33,912,109 | % 38.84 | Chironomus_tentans | 50X | 57274 | Net | 9.943% | 1000 | loose |
50 | Clunio_marinus | 23,763 | 85,491,412 | 84,365,936 | 1,125,476 | % 30.83 | Clunio_marinus | 140X | 1871155 | Net | 10.684% | 1000 | loose |
51 | Lutzomyia_longipalpis | 11,532 | 154,229,266 | 142,771,332 | 11,457,934 | % 36.09 | Lutzomyia_longipalpis | 38.9X | 85093 | Net | 10.883% | 1000 | loose |
52 | Phlebotomus_papatasi | 106,826 | 363,767,980 | 345,389,541 | 18,378,439 | % 45.25 | Phlebotomus_papatasi | 15.1X | 27956 | Net | 12.066% | 1000 | loose |
53 | Coboldia_fuscipes | 1,732 | 98,759,061 | 98,471,596 | 287,465 | % 34.13 | Coboldia_fuscipes | 53X | 242385 | Net | 11.908% | 1000 | loose |
54 | Mayetiola_destructor | 24,475 | 185,827,756 | 153,138,503 | 32,689,253 | % 36.15 | Mayetiola_destructor | 34X | 756041 | Net | 10.512% | 1000 | loose |
55 | Clogmia_albipunctata | 42,886 | 256,248,749 | 246,743,069 | 9,505,680 | % 43.24 | Clogmia_albipunctata | 17.8X | 13081 | Net | 12.098% | 1000 | loose |
[ 56] | apiMel4 | 5,321 | 250,287,000 | 229,121,901 | 21,165,099 | % 45.35 | A. mellifera | 13219345 | Net | 8.183% | 3000 | loose | |
57 | Bactrocera_dorsalis | 7,166 | 414,984,608 | 298,647,366 | 116,337,242 | % 32.02 | Bactrocera_dorsalis | 70X | 1206000 | Net | 19.222% | 1000 | loose |
58 | Bactrocera_latifrons | 3,306 | 462,505,359 | 431,224,478 | 31,280,881 | % 35.57 | Bactrocera_latifrons | 101X | 974427 | Net | 20.469% | 1000 | loose |
59 | Bactrocera_tryoni | 31,960 | 519,005,690 | 404,599,357 | 114,406,333 | % 37.41 | Bactrocera_tryoni | 96X | 69551 | Net | 19.523% | 1000 | loose |
60 | Bactrocera_oleae | 36,198 | 471,780,370 | 420,573,776 | 51,206,594 | % 37.62 | Bactrocera_oleae | 50X | 139566 | Net | 20.400% | 1000 | loose |
61 | Zeugodacus_cucurbitae | 5,572 | 374,820,345 | 316,281,465 | 58,538,880 | % 36.97 | Zeugodacus_cucurbitae | 66.2X | 1399015 | Net | 20.252% | 1000 | loose |
62 | Ceratitis_capitata | 2,355 | 436,490,799 | 435,785,331 | 705,468 | % 39.93 | Ceratitis_capitata | 152.5X | 1665634 | Net | 19.997% | 1000 | loose |
63 | Cirrula_hians | 172,401 | 399,685,866 | 361,055,023 | 38,630,843 | % 37.21 | Cirrula_hians | 27X | 2483 | Net | 12.751% | 1000 | loose |
64 | Ephydra_gracilis | 61,434 | 410,872,512 | 367,026,881 | 43,845,631 | % 34.53 | Ephydra_gracilis | 9.4X | 11309 | Net | 16.643% | 1000 | loose |
65 | Sphyracephala_brevicornis | 135,449 | 315,521,093 | 266,391,491 | 49,129,602 | % 39.65 | Sphyracephala_brevicornis | 7.4X | 2517 | Net | 14.969% | 1000 | loose |
66 | Glossina_austeni | 2,205 | 370,264,922 | 353,470,954 | 16,793,968 | % 34.37 | Glossina_austeni | 62X | 812585 | Net | 16.948% | 1000 | loose |
67 | Glossina_morsitans_1 | 32,924 | 348,062,779 | 335,305,907 | 12,756,872 | % 32.41 | Glossina_morsitans_1 | 13.9X | 20491 | Net | 15.733% | 1000 | loose |
68 | Glossina_morsitans_2 | 24,071 | 363,107,242 | 363,107,242 | 0 | % 33.60 | Glossina_morsitans_2 | 49769 | Net | 16.954% | 1000 | loose | |
69 | Glossina_pallidipes | 1,726 | 357,332,231 | 351,918,494 | 5,413,737 | % 33.37 | Glossina_pallidipes | 78X | 1038751 | Net | 17.101% | 1000 | loose |
70 | Glossina_fuscipes | 2,395 | 374,774,708 | 361,274,315 | 13,500,393 | % 34.16 | Glossina_fuscipes | 120X | 561190 | Net | 17.078% | 1000 | loose |
71 | Glossina_palpalis_gambiensis | 3,926 | 380,104,241 | 346,046,687 | 34,057,554 | % 33.31 | Glossina_palpalis_gambiensis | 138X | 575037 | Net | 16.827% | 1000 | loose |
72 | Glossina_brevipalpis | 1,651 | 315,360,362 | 293,464,648 | 21,895,714 | % 39.57 | Glossina_brevipalpis | 81X | 1209507 | Net | 17.022% | 1000 | loose |
73 | Neobellieria_bullata | 184,347 | 396,224,597 | 379,790,714 | 16,433,883 | % 37.56 | Neobellieria_bullata | 34X | 2219 | Net | 11.431% | 1000 | loose |
74 | Calliphora_vicina | 197,510 | 459,231,066 | 328,533,602 | 130,697,464 | % 41.41 | Calliphora_vicina | 10.4X | 2418 | Net | 15.621% | 1000 | loose |
75 | Lucilia_cuprina | 5,858 | 378,290,214 | 374,710,711 | 3,579,503 | % 50.16 | Lucilia_cuprina | 158.3X | 275862 | Net | 20.785% | 1000 | loose |
76 | Lucilia_sericata | 92,075 | 319,935,455 | 270,204,707 | 49,730,748 | % 45.25 | Lucilia_sericata | 8.5X | 4679 | Net | 15.766% | 1000 | loose |
77 | Condylostylus_patibulatus | 211,317 | 451,941,653 | 339,265,009 | 112,676,644 | % 51.78 | Condylostylus_patibulatus | 15.8X | 2239 | Net | 8.158% | 1000 | loose |
78 | Phormia_regina | 192,460 | 549,932,840 | 541,284,364 | 8,648,476 | % 56.85 | Phormia_regina | 44X | 7927 | Net | 20.199% | 1000 | loose |
79 | Sarcophagidae_BV_2014 | 287,425 | 494,580,772 | 425,372,192 | 69,208,580 | % 45.93 | Sarcophagidae_BV_2014 | 16.4X | 1715 | Net | 10.061% | 1000 | loose |
80 | Paykullia_maculata | 147,653 | 422,395,093 | 421,186,575 | 1,208,518 | % 54.05 | Paykullia_maculata | 96X | 7609 | Net | 19.655% | 1000 | loose |
81 | Teleopsis_dalmanni | 25,142 | 621,706,043 | 621,310,649 | 395,394 | % 41.54 | Teleopsis_dalmanni | 107.5X | 66701 | Net | 23.293% | 1000 | loose |
82 | Holcocephala_fusca | 133,294 | 516,230,974 | 410,754,649 | 105,476,325 | % 41.12 | Holcocephala_fusca | 12.7X | 5217 | Net | 10.901% | 1000 | loose |
83 | Megaselia_abdita | 121,379 | 412,270,594 | 367,134,505 | 45,136,089 | % 47.66 | Megaselia_abdita | 20.1X | 4558 | Net | 13.126% | 1000 | loose |
84 | Tipula_oleracea | 186,864 | 541,697,276 | 360,189,489 | 181,507,787 | % 32.56 | Tipula_oleracea | 6.1X | 3390 | Net | 8.632% | 1000 | loose |
85 | Haematobia_irritans | 76,616 | 1,143,537,531 | 603,547,513 | 539,990,018 | % 48.79 | Haematobia_irritans | 1X | 23099 | Net | 14.236% | 1000 | loose |
86 | musDom2 | 20,487 | 750,416,349 | 691,732,557 | 58,683,792 | % 57.08 | M. domestica | 76X | 226573 | Net | 19.278% | 3000 | loose |
87 | Chaoborus_trivitattus | 80,757 | 269,281,158 | 225,218,005 | 44,063,153 | % 55.51 | Chaoborus_trivitattus | 11.2X | 4087 | Net | 8.821% | 1000 | loose |
88 | Culicoides_sonorensis | 7,974 | 194,177,243 | 189,075,353 | 5,101,890 | % 47.09 | Culicoides_sonorensis | 27X | 89502 | Net | 11.882% | 1000 | loose |
89 | Mochlonyx_cinctipes | 95,131 | 441,264,227 | 396,345,889 | 44,918,338 | % 49.48 | Mochlonyx_cinctipes | 12.9X | 6407 | Net | 11.607% | 1000 | loose |
90 | Megaselia_scalaris | 231,041 | 489,347,612 | 303,723,334 | 185,624,278 | % 42.05 | Megaselia_scalaris | 5716 | Net | 8.143% | 1000 | loose | |
91 | Aedes_aegypti | 2,310 | 1,278,732,104 | 1,278,709,169 | 22,935 | % 49.04 | Aedes_aegypti | 110X | 409777670 | Net | 14.028% | 1000 | loose |
92 | Aedes_albopictus | 2,435 | 2,247,306,217 | 2,247,306,217 | 0 | % 56.63 | Aedes_albopictus | 80X | 3303944 | Net | 15.172% | 1000 | loose |
93 | Hermetia_illucens | 319,196 | 890,457,210 | 693,082,737 | 197,374,473 | % 24.43 | Hermetia_illucens | 8.5X | 3532 | Net | 11.575% | 1000 | loose |
94 | Rhagoletis_zephyria | 86,670 | 1,113,962,544 | 1,045,098,753 | 68,863,791 | % 45.05 | Rhagoletis_zephyria | 35X | 62643 | Net | 21.196% | 1000 | loose |
95 | Culex_quinquefasciatus | 3,171 | 579,042,118 | 539,959,374 | 39,082,744 | % 53.31 | Culex_quinquefasciatus | 486756 | Net | 13.421% | 1000 | loose | |
96 | Belgica_antarctica | 4,997 | 89,583,723 | 88,894,437 | 689,286 | % 21.30 | Belgica_antarctica | 150X | 98263 | Net | 10.737% | 1000 | loose |
97 | Eristalis_dimidiata | 146,196 | 315,428,702 | 168,946,833 | 146,481,869 | % 17.57 | Eristalis_dimidiata | 8X | 2265 | Net | 9.259% | 1000 | loose |
98 | Themira_minor | 33,166 | 99,885,510 | 92,589,053 | 7,296,457 | % 22.44 | Themira_minor | 21.8X | 3571 | Net | 14.206% | 1000 | loose |
99 | A_maculatus | 50,590 | 462,688,933 | 441,164,621 | 21,524,312 | % 19.04 | A_maculatus | 93.21X | 198528 | Net | 13.114% | 1000 | loose |
100 | A_nili | 51,048 | 98,320,046 | 98,174,933 | 145,113 | % 13.72 | A_nili | 0.4X | 2577 | Net | 9.202% | 1000 | loose |
101 | A_sinensis | 9,592 | 220,777,669 | 214,509,976 | 6,267,693 | % 18.43 | A_sinensis | 30X | 814231 | Net | 12.718% | 1000 | loose |
102 | A_culicifacies | 16,162 | 202,998,806 | 187,158,781 | 15,840,025 | % 18.38 | A_culicifacies | 31X | 22320 | Net | 11.996% | 1000 | loose |
103 | A_minimus | 678 | 201,793,324 | 186,406,809 | 15,386,515 | % 18.24 | A_minimus | 211X | 10313149 | Net | 12.353% | 1000 | loose |
104 | A_funestus | 1,392 | 225,223,604 | 190,015,440 | 35,208,164 | % 20.93 | A_funestus | 135X | 671960 | Net | 12.236% | 1000 | loose |
105 | A_christyi | 30,369 | 172,658,580 | 169,987,185 | 2,671,395 | % 19.17 | A_christyi | 35X | 9057 | Net | 11.794% | 1000 | loose |
106 | A_arabiensis | 1,214 | 246,567,867 | 211,443,117 | 35,124,750 | % 19.98 | A_arabiensis | 100X | 5604218 | Net | 12.738% | 1000 | loose |
107 | A_coluzzii | 10,521 | 224,417,174 | 209,529,067 | 14,888,107 | % 20.43 | A_coluzzii | 8X | 4437438 | Net | 12.160% | 1000 | loose |
108 | A_quadriannulatus | 2,823 | 283,828,998 | 208,966,669 | 74,862,329 | % 20.09 | A_quadriannulatus | 93X | 1641272 | Net | 12.514% | 1000 | loose |
109 | A_merus | 2,027 | 288,048,996 | 217,320,349 | 70,728,647 | % 20.13 | A_merus | 147X | 1489982 | Net | 12.901% | 1000 | loose |
110 | anoGam3 | 8,041 | 264,974,304 | 252,401,356 | 12,572,948 | % 14.28 | A. gambiae | 6.5X | 49364325 | Net | 13.776% | 3000 | loose |
111 | A_gambiae_1 | 8,090 | 265,027,044 | 252,454,096 | 12,572,948 | % 21.75 | A_gambiae_1 | 49364325 | Net | 13.328% | 1000 | loose | |
112 | A_melas | 20,229 | 224,162,116 | 203,428,649 | 20,733,467 | % 19.89 | A_melas | 147X | 18103 | Net | 12.182% | 1000 | loose |
113 | A_epiroticus | 2,673 | 223,486,714 | 202,632,179 | 20,854,535 | % 18.82 | A_epiroticus | 49X | 366526 | Net | 12.650% | 1000 | loose |
114 | A_cracens | 34,365 | 326,465,827 | 325,760,517 | 705,310 | % 17.26 | A_cracens | 212.09X | 153896 | Net | 11.692% | 1000 | loose |
115 | A_dirus | 1,266 | 216,307,690 | 197,741,572 | 18,566,118 | % 17.15 | A_dirus | 184X | 6906475 | Net | 12.779% | 1000 | loose |
116 | A_stephensi | 227 | 196,058,862 | 181,678,847 | 14,380,015 | % 17.59 | A_stephensi | 1X | 37522140 | Net | 11.913% | 1000 | loose |
117 | A_farauti | 310 | 183,103,254 | 175,822,780 | 7,280,474 | % 18.58 | A_farauti | 233X | 12895223 | Net | 12.374% | 1000 | loose |
118 | A_koliensis | 41,925 | 151,110,088 | 151,110,062 | 26 | % 18.49 | A_koliensis | 39X | 4659 | Net | 10.841% | 1000 | loose |
119 | A_farauti_No4 | 14,407 | 146,379,160 | 146,379,155 | 5 | % 18.16 | A_farauti_No4 | 131X | 16229 | Net | 11.042% | 1000 | loose |
120 | A_punctulatus | 20,774 | 146,157,495 | 146,157,493 | 2 | % 18.12 | A_punctulatus | 50X | 10256 | Net | 10.686% | 1000 | loose |
121 | A_atroparvus | 1,371 | 224,290,125 | 188,952,560 | 35,337,565 | % 15.90 | A_atroparvus | 98X | 9206694 | Net | 12.705% | 1000 | loose |
122 | A_darlingi | 2,220 | 136,935,538 | 136,907,773 | 27,765 | % 16.78 | A_darlingi | 20X | 115072 | Net | 11.465% | 1000 | loose |
123 | A_aquasalis | 16,504 | 162,944,031 | 162,357,109 | 586,922 | % 16.95 | A_aquasalis | 340X | 53365 | Net | 11.625% | 1000 | loose |
124 | A_albimanus | 201 | 173,339,239 | 163,494,474 | 9,844,765 | % 15.54 | A_albimanus | 95X | 37976048 | Net | 11.850% | 1000 | loose |