Frequently asked mailing list questions: Difference between revisions

From genomewiki
Jump to navigationJump to search
No edit summary
No edit summary
Line 36: Line 36:
''How do I get a table of restriction enzymes?''
''How do I get a table of restriction enzymes?''
*[http://www.soe.ucsc.edu/pipermail/genome/2006-May/010707.html Restriction enzyme track not on table browser?]
*[http://www.soe.ucsc.edu/pipermail/genome/2006-May/010707.html Restriction enzyme track not on table browser?]
Note that the utility findCutters is better than oligoMatch: oligoMatch has no good way of finding AsuI (G'GnC_C).  It's possible
but it would need to be run four times: GGACC, GGCCC, GGGCC, GGTCC and the output combined.  findCutters does it all in one command.


''Go''
''Go''

Revision as of 23:23, 9 February 2009

This page is intended to be a collection of previously answered questions on the Genome and Genome-Mirror mailing lists that are useful for answering repeat questions.

Genome

If a user is looking for human or mouse genome updates, point them to:

To report errors in the human or mouse assemblies:

I have a list of Gene Symbols and I would like to get corresponding sequences for them.

Help me create a Custom Track

Is there a size limit for custom tracks?

How do I find non-protein-coding genes?

I have a list of identifiers, how do I find the coordinates?

Format of chain, chainLink and net tables

How do I get a table of restriction enzymes?

Note that the utility findCutters is better than oligoMatch: oligoMatch has no good way of finding AsuI (G'GnC_C). It's possible but it would need to be run four times: GGACC, GGCCC, GGGCC, GGTCC and the output combined. findCutters does it all in one command.

Go

How do I find orthologous genes (using TransMap)

How do I find telomeres and centromeres?


Genome-Mirror

Retrieved from "https://genomewiki.ucsc.edu/index.php?title=Frequently_asked_mailing_list_questions&oldid=7152"