Hg19 Andy's alignment notes: Difference between revisions
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| Line 17: | Line 17: | ||
| 10M | | 10M | ||
| 100 | | 100 | ||
| | | ... | ||
|- | |- | ||
| Cat | | Cat | ||
| felCat3 | | felCat3 | ||
| 2009-05-14 | | 2009-05-14 | ||
| | | 20M | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | ... | ||
|- | |- | ||
| Guinea Pig | | Guinea Pig | ||
| cavPor3 | | cavPor3 | ||
| 2009-05-14 | | 2009-05-14 | ||
| | | 20M | ||
| 10M | | 10M | ||
| 100 | | 100 | ||
| | | ... | ||
|- | |- | ||
| Cow | | Cow | ||
| bosTau4 | | bosTau4 | ||
| 2009-05-21 | | 2009-05-21 | ||
| | | 20M | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | ... | ||
|- | |- | ||
| Megabat | | Megabat | ||
| pteVam1 | | pteVam1 | ||
| 2009-05-21 | | 2009-05-21 | ||
| | | 20M | ||
| 10M | | 10M | ||
| 200 | | 200 | ||
| | | ... | ||
|- | |- | ||
| Horse | | Horse | ||
| equCab2 | | equCab2 | ||
| 2009-05-21 | | 2009-05-21 | ||
| | | 20M | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | ... | ||
|- | |- | ||
| Alpaca | | Alpaca | ||
| vicPac1 | | vicPac1 | ||
| 2009-05-21 | | 2009-05-21 | ||
| 20M | |||
| 10M | | 10M | ||
| | | 300 | ||
| | | ... | ||
|- | |- | ||
| Microbat | | Microbat | ||
| Line 73: | Line 73: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | ... | ||
|- | |- | ||
| Dolphin | | Dolphin | ||
| turTru1 | | turTru1 | ||
| 2009-05-21 | | 2009-05-21 | ||
| | | 20M | ||
| 10M | | 10M | ||
| 200 | | 200 | ||
| | | ... | ||
|- | |- | ||
| Sloth | | Sloth | ||
| Line 89: | Line 89: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | ... | ||
|- | |- | ||
| Wallaby | | Wallaby | ||
| macEug1 | | macEug1 | ||
| 2009-05-21 | | 2009-05-21 | ||
| | | 10M | ||
| | | 5M | ||
| | | 1000 | ||
| | | done (2009-06-03) | ||
|} | |} | ||
Latest revision as of 16:39, 4 June 2009
- everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
| Species | Database | Started | SEQ1_CHUNK | SEQ2_CHUNK | SEQ2_LIMIT | Status |
|---|---|---|---|---|---|---|
| Squirrel | speTri1 | 2009-05-14 | 10M | 10M | 100 | ... |
| Cat | felCat3 | 2009-05-14 | 20M | 10M | 300 | ... |
| Guinea Pig | cavPor3 | 2009-05-14 | 20M | 10M | 100 | ... |
| Cow | bosTau4 | 2009-05-21 | 20M | 10M | 300 | ... |
| Megabat | pteVam1 | 2009-05-21 | 20M | 10M | 200 | ... |
| Horse | equCab2 | 2009-05-21 | 20M | 10M | 300 | ... |
| Alpaca | vicPac1 | 2009-05-21 | 20M | 10M | 300 | ... |
| Microbat | myoLuc1 | 2009-05-21 | 20M | 10M | 300 | ... |
| Dolphin | turTru1 | 2009-05-21 | 20M | 10M | 200 | ... |
| Sloth | choHof1 | 2009-05-21 | 20M | 10M | 300 | ... |
| Wallaby | macEug1 | 2009-05-21 | 10M | 5M | 1000 | done (2009-06-03) |
