Mm10 Genome size statistics: Difference between revisions

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(updated data)
(updated with new genomes)
 
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Line 47: Line 47:
<TD ALIGN=RIGHT>N/A</TD>
<TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>N/A</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat 02]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4 rn4]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/16219 02]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5]</TH>
<TH ALIGN=RIGHT>45</TH>
<TH ALIGN=RIGHT>2,739</TH>
   <TD ALIGN=RIGHT>2,834,127,293</TD><TD ALIGN=RIGHT>2,566,294,765</TD>
   <TD ALIGN=RIGHT>2,909,698,938</TD><TD ALIGN=RIGHT>2,572,853,723</TD>
   <TD ALIGN=RIGHT>267,832,528</TD><TD ALIGN=RIGHT>%&nbsp;44.29</TD>
   <TD ALIGN=RIGHT>336,845,215</TD><TD ALIGN=RIGHT>%&nbsp;42.81</TD>
   <TD ALIGN=CENTER>[http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat Rat]</TD><TH ALIGN=CENTER>20X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR06 Rat]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>143002779</TH>
<TH ALIGN=CENTER>154597545</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>54.645%</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>67.353%</TD>
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
Line 65: Line 65:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 04]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 04]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH>
<TH ALIGN=RIGHT>185,042</TH>
  <TD ALIGN=RIGHT>2,902,270,736</TD><TD ALIGN=RIGHT>1,852,394,361</TD>
  <TD ALIGN=RIGHT>1,049,876,375</TD><TD ALIGN=RIGHT>%&nbsp;37.31</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Mouse lemur]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>140884</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>26.636%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 05]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH>
<TH ALIGN=RIGHT>210,053</TH>
<TH ALIGN=RIGHT>210,053</TH>
   <TD ALIGN=RIGHT>2,158,502,098</TD><TD ALIGN=RIGHT>1,844,961,421</TD>
   <TD ALIGN=RIGHT>2,158,502,098</TD><TD ALIGN=RIGHT>1,844,961,421</TD>
Line 83: Line 74:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/67945 06]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/72441 05]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH>
<TH ALIGN=RIGHT>2,685</TH>
<TH ALIGN=RIGHT>4,229</TH>
   <TD ALIGN=RIGHT>2,608,572,064</TD><TD ALIGN=RIGHT>2,477,131,095</TD>
  <TD ALIGN=RIGHT>2,618,204,639</TD><TD ALIGN=RIGHT>2,314,771,103</TD>
   <TD ALIGN=RIGHT>131,440,969</TD><TD ALIGN=RIGHT>%&nbsp;46.69</TD>
  <TD ALIGN=RIGHT>303,433,536</TD><TD ALIGN=RIGHT>%&nbsp;32.31</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Squirrel monkey]</TD><TH ALIGN=CENTER>80X</TH>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Naked mole rat]</TD><TH ALIGN=CENTER>90X</TH>
<TH ALIGN=CENTER>18744880</TH>
<TH ALIGN=CENTER>20532749</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>32.339%</TD>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>32.753%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 06]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH>
<TH ALIGN=RIGHT>3,144</TH>
  <TD ALIGN=RIGHT>2,723,219,641</TD><TD ALIGN=RIGHT>2,663,369,733</TD>
  <TD ALIGN=RIGHT>59,849,908</TD><TD ALIGN=RIGHT>%&nbsp;27.53</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Guinea pig]</TD><TH ALIGN=CENTER>6.76X</TH>
<TH ALIGN=CENTER>27942054</TH>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>28.447%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 07]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH>
<TH ALIGN=RIGHT>3,242</TH>
   <TD ALIGN=RIGHT>2,737,490,501</TD><TD ALIGN=RIGHT>2,604,023,284</TD>
   <TD ALIGN=RIGHT>133,467,217</TD><TD ALIGN=RIGHT>%&nbsp;43.74</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Rabbit]</TD><TH ALIGN=CENTER>6.51X</TH>
<TH ALIGN=CENTER>111795807</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.248%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/771 08]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH>
<TH ALIGN=RIGHT>187,558</TH>
  <TD ALIGN=RIGHT>3,445,784,354</TD><TD ALIGN=RIGHT>1,923,624,051</TD>
  <TD ALIGN=RIGHT>1,522,160,303</TD><TD ALIGN=RIGHT>%&nbsp;11.44</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Pika]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>88760</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>14.542%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/68323 07]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 09]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH>
<TH ALIGN=RIGHT>39,267</TH>
<TH ALIGN=RIGHT>150,851</TH>
   <TD ALIGN=RIGHT>2,643,978,223</TD><TD ALIGN=RIGHT>2,430,064,805</TD>
   <TD ALIGN=RIGHT>3,660,774,957</TD><TD ALIGN=RIGHT>2,137,225,476</TD>
   <TD ALIGN=RIGHT>213,913,418</TD><TD ALIGN=RIGHT>%&nbsp;32.64</TD>
   <TD ALIGN=RIGHT>1,523,549,481</TD><TD ALIGN=RIGHT>%&nbsp;20.43</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFSB00 Naked mole-rat]</TD><TH ALIGN=CENTER>90X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tree shrew]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>1603177</TH>
<TH ALIGN=CENTER>127888</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>32.163%</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>19.766%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 08]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 10]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH>
<TH ALIGN=RIGHT>93</TH>
<TH ALIGN=RIGHT>93</TH>
   <TD ALIGN=RIGHT>3,137,161,264</TD><TD ALIGN=RIGHT>2,897,310,462</TD>
   <TD ALIGN=RIGHT>3,137,161,264</TD><TD ALIGN=RIGHT>2,897,310,462</TD>
Line 110: Line 128:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 09]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 11]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH>
<TH ALIGN=RIGHT>46,823</TH>
<TH ALIGN=RIGHT>46,823</TH>
   <TD ALIGN=RIGHT>3,029,553,646</TD><TD ALIGN=RIGHT>2,822,760,080</TD>
   <TD ALIGN=RIGHT>3,029,553,646</TD><TD ALIGN=RIGHT>2,822,760,080</TD>
Line 119: Line 137:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/10627 10]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/10627 12]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH>
<TH ALIGN=RIGHT>24,129</TH>
<TH ALIGN=RIGHT>24,129</TH>
   <TD ALIGN=RIGHT>3,309,577,922</TD><TD ALIGN=RIGHT>2,902,338,967</TD>
   <TD ALIGN=RIGHT>3,309,577,922</TD><TD ALIGN=RIGHT>2,902,338,967</TD>
Line 128: Line 146:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu1.0/ 11]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/13975 13]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2]</TH>
<TH ALIGN=RIGHT>17,968</TH>
<TH ALIGN=RIGHT>17,976</TH>
   <TD ALIGN=RIGHT>2,936,035,333</TD><TD ALIGN=RIGHT>2,756,591,777</TD>
   <TD ALIGN=RIGHT>2,936,052,603</TD><TD ALIGN=RIGHT>2,756,609,047</TD>
   <TD ALIGN=RIGHT>179,443,556</TD><TD ALIGN=RIGHT>%&nbsp;50.82</TD>
   <TD ALIGN=RIGHT>179,443,556</TD><TD ALIGN=RIGHT>%&nbsp;51.44</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV00 Gibbon]</TD><TH ALIGN=CENTER>5.6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV01 Gibbon]</TD><TH ALIGN=CENTER>5.6X</TH>
<TH ALIGN=CENTER>22692035</TH>
<TH ALIGN=CENTER>22692035</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>34.132%</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>34.031%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 12]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 14]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH>
<TH ALIGN=RIGHT>55</TH>
<TH ALIGN=RIGHT>55</TH>
   <TD ALIGN=RIGHT>3,446,771,396</TD><TD ALIGN=RIGHT>3,093,543,172</TD>
   <TD ALIGN=RIGHT>3,446,771,396</TD><TD ALIGN=RIGHT>3,093,543,172</TD>
Line 146: Line 164:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 13]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 15]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH>
<TH ALIGN=RIGHT>656,709</TH>
<TH ALIGN=RIGHT>656,709</TH>
   <TD ALIGN=RIGHT>3,179,905,132</TD><TD ALIGN=RIGHT>2,768,536,343</TD>
   <TD ALIGN=RIGHT>3,179,905,132</TD><TD ALIGN=RIGHT>2,768,536,343</TD>
Line 155: Line 173:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 14]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 16]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH>
<TH ALIGN=RIGHT>34,103</TH>
<TH ALIGN=RIGHT>34,103</TH>
   <TD ALIGN=RIGHT>2,969,988,180</TD><TD ALIGN=RIGHT>2,639,145,830</TD>
   <TD ALIGN=RIGHT>2,969,988,180</TD><TD ALIGN=RIGHT>2,639,145,830</TD>
Line 164: Line 182:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 15]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 17]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH>
<TH ALIGN=RIGHT>387,374</TH>
<TH ALIGN=RIGHT>387,374</TH>
   <TD ALIGN=RIGHT>2,867,564,654</TD><TD ALIGN=RIGHT>2,741,849,051</TD>
   <TD ALIGN=RIGHT>2,867,564,654</TD><TD ALIGN=RIGHT>2,741,849,051</TD>
Line 173: Line 191:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 16]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 18]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH>
<TH ALIGN=RIGHT>7,793</TH>
<TH ALIGN=RIGHT>7,793</TH>
   <TD ALIGN=RIGHT>2,519,724,550</TD><TD ALIGN=RIGHT>2,359,530,453</TD>
   <TD ALIGN=RIGHT>2,519,724,550</TD><TD ALIGN=RIGHT>2,359,530,453</TD>
Line 182: Line 200:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 17]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 19]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH>
<TH ALIGN=RIGHT>14,205</TH>
<TH ALIGN=RIGHT>14,205</TH>
   <TD ALIGN=RIGHT>2,914,958,544</TD><TD ALIGN=RIGHT>2,752,505,800</TD>
   <TD ALIGN=RIGHT>2,914,958,544</TD><TD ALIGN=RIGHT>2,752,505,800</TD>
Line 191: Line 209:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 18]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 20]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH>
<TH ALIGN=RIGHT>185,042</TH>
  <TD ALIGN=RIGHT>2,902,270,736</TD><TD ALIGN=RIGHT>1,852,394,361</TD>
  <TD ALIGN=RIGHT>1,049,876,375</TD><TD ALIGN=RIGHT>%&nbsp;37.31</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Mouse lemur]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>140884</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>26.636%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/67945 21]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH>
<TH ALIGN=RIGHT>2,685</TH>
  <TD ALIGN=RIGHT>2,608,572,064</TD><TD ALIGN=RIGHT>2,477,131,095</TD>
  <TD ALIGN=RIGHT>131,440,969</TD><TD ALIGN=RIGHT>%&nbsp;46.69</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Squirrel monkey]</TD><TH ALIGN=CENTER>80X</TH>
<TH ALIGN=CENTER>18744880</TH>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>32.339%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 22]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH>
<TH ALIGN=RIGHT>34</TH>
<TH ALIGN=RIGHT>34</TH>
   <TD ALIGN=RIGHT>2,484,532,062</TD><TD ALIGN=RIGHT>2,428,790,173</TD>
   <TD ALIGN=RIGHT>2,484,532,062</TD><TD ALIGN=RIGHT>2,428,790,173</TD>
Line 200: Line 236:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 19]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 23]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH>
<TH ALIGN=RIGHT>3,144</TH>
  <TD ALIGN=RIGHT>2,723,219,641</TD><TD ALIGN=RIGHT>2,663,369,733</TD>
  <TD ALIGN=RIGHT>59,849,908</TD><TD ALIGN=RIGHT>%&nbsp;27.53</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Guinea pig]</TD><TH ALIGN=CENTER>6.76X</TH>
<TH ALIGN=CENTER>27942054</TH>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>28.447%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 20]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH>
<TH ALIGN=RIGHT>298,413</TH>
<TH ALIGN=RIGHT>298,413</TH>
   <TD ALIGN=RIGHT>2,962,253,608</TD><TD ALIGN=RIGHT>1,922,910,435</TD>
   <TD ALIGN=RIGHT>2,962,253,608</TD><TD ALIGN=RIGHT>1,922,910,435</TD>
Line 218: Line 245:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/bottlenosedDolphin/Turtru1.0/ 21]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/20365 24]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH>
<TH ALIGN=RIGHT>116,467</TH>
<TH ALIGN=RIGHT>240,901</TH>
   <TD ALIGN=RIGHT>2,519,048,486</TD><TD ALIGN=RIGHT>2,298,444,090</TD>
   <TD ALIGN=RIGHT>2,551,996,573</TD><TD ALIGN=RIGHT>2,332,402,443</TD>
   <TD ALIGN=RIGHT>220,604,396</TD><TD ALIGN=RIGHT>%&nbsp;43.86</TD>
   <TD ALIGN=RIGHT>219,594,130</TD><TD ALIGN=RIGHT>%&nbsp;43.56</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN00 Dolphin]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Dolphin]</TD><TH ALIGN=CENTER>3.5X</TH>
<TH ALIGN=CENTER>166056</TH>
<TH ALIGN=CENTER>116261</TH>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>28.761%</TD>
   <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>30.267%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 22]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/13421 25]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH>
<TH ALIGN=RIGHT>150,851</TH>
<TH ALIGN=RIGHT>4,583</TH>
   <TD ALIGN=RIGHT>3,660,774,957</TD><TD ALIGN=RIGHT>2,137,225,476</TD>
   <TD ALIGN=RIGHT>2,808,525,991</TD><TD ALIGN=RIGHT>2,518,987,191</TD>
   <TD ALIGN=RIGHT>1,523,549,481</TD><TD ALIGN=RIGHT>%&nbsp;20.43</TD>
   <TD ALIGN=RIGHT>289,538,800</TD><TD ALIGN=RIGHT>%&nbsp;44.30</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tree shrew]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Pig]</TD><TH ALIGN=CENTER>24X</TH>
<TH ALIGN=CENTER>127888</TH>
<TH ALIGN=CENTER>148491826</TH>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>19.766%</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.685%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/84 23]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr2 susScr2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/82 26]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH>
<TH ALIGN=RIGHT>20</TH>
<TH ALIGN=RIGHT>11,692</TH>
   <TD ALIGN=RIGHT>2,262,501,571</TD><TD ALIGN=RIGHT>2,231,298,548</TD>
   <TD ALIGN=RIGHT>2,981,119,579</TD><TD ALIGN=RIGHT>2,804,673,174</TD>
   <TD ALIGN=RIGHT>31,203,023</TD><TD ALIGN=RIGHT>%&nbsp;42.41</TD>
   <TD ALIGN=RIGHT>176,446,405</TD><TD ALIGN=RIGHT>%&nbsp;49.56</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK00 Pig]</TD><TH ALIGN=CENTER>24X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Cow]</TD><TH ALIGN=CENTER>7.1X</TH>
<TH ALIGN=CENTER>134541103</TH>
<TH ALIGN=CENTER>85119472</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>23.248%</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>26.255%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 24]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/83 27]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH>
<TH ALIGN=RIGHT>3,242</TH>
<TH ALIGN=RIGHT>1,218</TH>
   <TD ALIGN=RIGHT>2,737,490,501</TD><TD ALIGN=RIGHT>2,604,023,284</TD>
   <TD ALIGN=RIGHT>2,860,512,983</TD><TD ALIGN=RIGHT>1,201,271,277</TD>
   <TD ALIGN=RIGHT>133,467,217</TD><TD ALIGN=RIGHT>%&nbsp;43.74</TD>
   <TD ALIGN=RIGHT>1,659,241,706</TD><TD ALIGN=RIGHT>%&nbsp;20.52</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Rabbit]</TD><TH ALIGN=CENTER>6.51X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Sheep]</TD><TH ALIGN=CENTER>3X</TH>
<TH ALIGN=CENTER>111795807</TH>
<TH ALIGN=CENTER>100831284</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.248%</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>15.341%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 25]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 28]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH>
<TH ALIGN=RIGHT>481,259</TH>
  <TD ALIGN=RIGHT>2,458,927,620</TD><TD ALIGN=RIGHT>2,060,419,685</TD>
  <TD ALIGN=RIGHT>398,507,935</TD><TD ALIGN=RIGHT>%&nbsp;35.67</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Sloth]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>9667</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>18.019%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10467 26]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH>
<TH ALIGN=RIGHT>6,323</TH>
  <TD ALIGN=RIGHT>3,103,808,406</TD><TD ALIGN=RIGHT>2,769,099,677</TD>
  <TD ALIGN=RIGHT>334,708,729</TD><TD ALIGN=RIGHT>%&nbsp;36.24</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Manatee]</TD><TH ALIGN=CENTER>150X</TH>
<TH ALIGN=CENTER>14442683</TH>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>26.546%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 27]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH>
<TH ALIGN=RIGHT>96,944</TH>
<TH ALIGN=RIGHT>96,944</TH>
   <TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD>
   <TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD>
Line 281: Line 290:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Felis_catus/catChr4/ 28]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/614 29]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH>
<TH ALIGN=RIGHT>104,054</TH>
<TH ALIGN=RIGHT>11,654</TH>
   <TD ALIGN=RIGHT>3,160,303,948</TD><TD ALIGN=RIGHT>1,990,635,005</TD>
   <TD ALIGN=RIGHT>2,034,575,300</TD><TD ALIGN=RIGHT>1,966,419,868</TD>
   <TD ALIGN=RIGHT>1,169,668,943</TD><TD ALIGN=RIGHT>%&nbsp;40.58</TD>
   <TD ALIGN=RIGHT>68,155,432</TD><TD ALIGN=RIGHT>%&nbsp;33.71</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACBE00 Cat]</TD><TH ALIGN=CENTER>2.8X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Microbat]</TD><TH ALIGN=CENTER>2.18X</TH>
<TH ALIGN=CENTER>164876586</TH>
<TH ALIGN=CENTER>4293315</TH>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>24.033%</TD>
   <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>24.363%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 29]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/16726 30]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]</TH>
<TH ALIGN=RIGHT>81,467</TH>
<TH ALIGN=RIGHT>5,500</TH>
   <TD ALIGN=RIGHT>2,299,509,015</TD><TD ALIGN=RIGHT>2,245,312,831</TD>
   <TD ALIGN=RIGHT>2,455,541,136</TD><TD ALIGN=RIGHT>2,364,296,207</TD>
   <TD ALIGN=RIGHT>54,196,184</TD><TD ALIGN=RIGHT>%&nbsp;38.96</TD>
   <TD ALIGN=RIGHT>91,244,929</TD><TD ALIGN=RIGHT>%&nbsp;43.24</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Panda]</TD><TH ALIGN=CENTER>73X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANG02 Cat]</TD><TH ALIGN=CENTER>12X</TH>
<TH ALIGN=CENTER>1281781</TH>
<TH ALIGN=CENTER>148491654</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>30.979%</TD>
   <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>29.725%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/85 30]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/85 31]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH>
<TH ALIGN=RIGHT>3,268</TH>
<TH ALIGN=RIGHT>3,268</TH>
   <TD ALIGN=RIGHT>2,410,976,875</TD><TD ALIGN=RIGHT>2,392,715,236</TD>
   <TD ALIGN=RIGHT>2,410,976,875</TD><TD ALIGN=RIGHT>2,392,715,236</TD>
Line 308: Line 317:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 31]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 32]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH>
<TH ALIGN=RIGHT>2,353</TH>
<TH ALIGN=RIGHT>81,467</TH>
   <TD ALIGN=RIGHT>3,196,760,833</TD><TD ALIGN=RIGHT>3,118,565,340</TD>
   <TD ALIGN=RIGHT>2,299,509,015</TD><TD ALIGN=RIGHT>2,245,312,831</TD>
   <TD ALIGN=RIGHT>78,195,493</TD><TD ALIGN=RIGHT>%&nbsp;47.63</TD>
   <TD ALIGN=RIGHT>54,196,184</TD><TD ALIGN=RIGHT>%&nbsp;38.96</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Elephant]</TD><TH ALIGN=CENTER>7X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Panda]</TD><TH ALIGN=CENTER>73X</TH>
<TH ALIGN=CENTER>46401353</TH>
<TH ALIGN=CENTER>1281781</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.823%</TD>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>30.979%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/ 32]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 33]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH>
<TH ALIGN=RIGHT>292,141</TH>
<TH ALIGN=RIGHT>379,802</TH>
   <TD ALIGN=RIGHT>4,813,823,562</TD><TD ALIGN=RIGHT>2,371,493,872</TD>
   <TD ALIGN=RIGHT>3,367,787,358</TD><TD ALIGN=RIGHT>2,133,134,836</TD>
   <TD ALIGN=RIGHT>2,442,329,690</TD><TD ALIGN=RIGHT>%&nbsp;37.23</TD>
   <TD ALIGN=RIGHT>1,234,652,522</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV00 Armadillo]</TD><TH ALIGN=CENTER>2X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/227 Hedgehog]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>55360</TH>
<TH ALIGN=CENTER>33565</TH>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>17.004%</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>9.856%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/614 33]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 34]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH>
<TH ALIGN=RIGHT>11,654</TH>
<TH ALIGN=RIGHT>262,057</TH>
   <TD ALIGN=RIGHT>2,034,575,300</TD><TD ALIGN=RIGHT>1,966,419,868</TD>
   <TD ALIGN=RIGHT>2,936,119,008</TD><TD ALIGN=RIGHT>1,832,864,697</TD>
   <TD ALIGN=RIGHT>68,155,432</TD><TD ALIGN=RIGHT>%&nbsp;33.71</TD>
   <TD ALIGN=RIGHT>1,103,254,311</TD><TD ALIGN=RIGHT>%&nbsp;39.07</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Microbat]</TD><TH ALIGN=CENTER>2.18X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/91 Shrew]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>4293315</TH>
<TH ALIGN=CENTER>47941</TH>
   <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>24.363%</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>9.382%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/82 34]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH>
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 35]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH>
<TH ALIGN=RIGHT>11,692</TH>
<TH ALIGN=RIGHT>481,259</TH>
   <TD ALIGN=RIGHT>2,981,119,579</TD><TD ALIGN=RIGHT>2,804,673,174</TD>
   <TD ALIGN=RIGHT>2,458,927,620</TD><TD ALIGN=RIGHT>2,060,419,685</TD>
   <TD ALIGN=RIGHT>176,446,405</TD><TD ALIGN=RIGHT>%&nbsp;49.56</TD>
   <TD ALIGN=RIGHT>398,507,935</TD><TD ALIGN=RIGHT>%&nbsp;35.67</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Cow]</TD><TH ALIGN=CENTER>7.1X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Sloth]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>85119472</TH>
<TH ALIGN=CENTER>9667</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>26.255%</TD>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>18.019%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/83 35]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/12594 36]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH>
<TH ALIGN=RIGHT>1,218</TH>
<TH ALIGN=RIGHT>46,559</TH>
   <TD ALIGN=RIGHT>2,860,512,983</TD><TD ALIGN=RIGHT>1,201,271,277</TD>
   <TD ALIGN=RIGHT>3,631,522,711</TD><TD ALIGN=RIGHT>3,299,882,028</TD>
   <TD ALIGN=RIGHT>1,659,241,706</TD><TD ALIGN=RIGHT>%&nbsp;20.52</TD>
   <TD ALIGN=RIGHT>331,640,683</TD><TD ALIGN=RIGHT>%&nbsp;49.28</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Sheep]</TD><TH ALIGN=CENTER>3X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Armadillo]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>100831284</TH>
<TH ALIGN=CENTER>1687935</TH>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>15.341%</TD>
   <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>25.201%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/771 36]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH>
<TH ALIGN=RIGHT>187,558</TH>
  <TD ALIGN=RIGHT>3,445,784,354</TD><TD ALIGN=RIGHT>1,923,624,051</TD>
  <TD ALIGN=RIGHT>1,522,160,303</TD><TD ALIGN=RIGHT>%&nbsp;11.44</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Pika]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>88760</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>14.542%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
Line 371: Line 371:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 38]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 38]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH>
<TH ALIGN=RIGHT>379,802</TH>
  <TD ALIGN=RIGHT>3,367,787,358</TD><TD ALIGN=RIGHT>2,133,134,836</TD>
  <TD ALIGN=RIGHT>1,234,652,522</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/227 Hedgehog]</TD><TH ALIGN=CENTER>2X</TH>
<TH ALIGN=CENTER>33565</TH>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>9.856%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 39]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH>
<TH ALIGN=RIGHT>325,491</TH>
<TH ALIGN=RIGHT>325,491</TH>
   <TD ALIGN=RIGHT>3,823,724,728</TD><TD ALIGN=RIGHT>2,111,581,369</TD>
   <TD ALIGN=RIGHT>3,823,724,728</TD><TD ALIGN=RIGHT>2,111,581,369</TD>
Line 389: Line 380:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 40]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10467 39]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH>
<TH ALIGN=RIGHT>262,057</TH>
<TH ALIGN=RIGHT>6,323</TH>
   <TD ALIGN=RIGHT>2,936,119,008</TD><TD ALIGN=RIGHT>1,832,864,697</TD>
  <TD ALIGN=RIGHT>3,103,808,406</TD><TD ALIGN=RIGHT>2,769,099,677</TD>
   <TD ALIGN=RIGHT>1,103,254,311</TD><TD ALIGN=RIGHT>%&nbsp;39.07</TD>
  <TD ALIGN=RIGHT>334,708,729</TD><TD ALIGN=RIGHT>%&nbsp;36.24</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/91 Shrew]</TD><TH ALIGN=CENTER>2X</TH>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Manatee]</TD><TH ALIGN=CENTER>150X</TH>
<TH ALIGN=CENTER>47941</TH>
<TH ALIGN=CENTER>14442683</TH>
   <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>9.382%</TD>
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>26.546%</TD>
<TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 40]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH>
<TH ALIGN=RIGHT>2,353</TH>
   <TD ALIGN=RIGHT>3,196,760,833</TD><TD ALIGN=RIGHT>3,118,565,340</TD>
   <TD ALIGN=RIGHT>78,195,493</TD><TD ALIGN=RIGHT>%&nbsp;47.63</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Elephant]</TD><TH ALIGN=CENTER>7X</TH>
<TH ALIGN=CENTER>46401353</TH>
   <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.823%</TD>
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
Line 407: Line 407:
<TD ALIGN=RIGHT>3000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>medium</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/mammals/opossum 42]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/3066 42]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH>
<TH ALIGN=RIGHT>11</TH>
  <TD ALIGN=RIGHT>3,605,631,728</TD><TD ALIGN=RIGHT>3,501,660,299</TD>
  <TD ALIGN=RIGHT>103,971,429</TD><TD ALIGN=RIGHT>%&nbsp;55.95</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Opossum]</TD><TH ALIGN=CENTER>6.8X</TH>
<TH ALIGN=CENTER>527952102</TH>
  <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>9.584%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/3066 43]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH>
<TH ALIGN=RIGHT>35,974</TH>
<TH ALIGN=RIGHT>35,974</TH>
   <TD ALIGN=RIGHT>3,174,693,010</TD><TD ALIGN=RIGHT>2,931,539,702</TD>
   <TD ALIGN=RIGHT>3,174,693,010</TD><TD ALIGN=RIGHT>2,931,539,702</TD>
Line 425: Line 416:
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10765 44]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/mammals/opossum 43]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH>
<TH ALIGN=RIGHT>25,212</TH>
<TH ALIGN=RIGHT>11</TH>
   <TD ALIGN=RIGHT>1,117,373,619</TD><TD ALIGN=RIGHT>1,086,614,815</TD>
   <TD ALIGN=RIGHT>3,605,631,728</TD><TD ALIGN=RIGHT>3,501,660,299</TD>
   <TD ALIGN=RIGHT>30,758,804</TD><TD ALIGN=RIGHT>%&nbsp;19.62</TD>
   <TD ALIGN=RIGHT>103,971,429</TD><TD ALIGN=RIGHT>%&nbsp;55.95</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Budgerigar]</TD><TH ALIGN=CENTER>7X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Opossum]</TD><TH ALIGN=CENTER>6.8X</TH>
<TH ALIGN=CENTER>10614383</TH>
<TH ALIGN=CENTER>527952102</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.589%</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>9.584%</TD>
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/110 45]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/110 44]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH>
<TH ALIGN=RIGHT>201,523</TH>
<TH ALIGN=RIGHT>201,523</TH>
   <TD ALIGN=RIGHT>1,996,811,212</TD><TD ALIGN=RIGHT>1,842,235,522</TD>
   <TD ALIGN=RIGHT>1,996,811,212</TD><TD ALIGN=RIGHT>1,842,235,522</TD>
Line 443: Line 434:
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/12107 46]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/111 45]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH>
<TH ALIGN=RIGHT>80,984</TH>
  <TD ALIGN=RIGHT>2,589,745,704</TD><TD ALIGN=RIGHT>2,158,289,746</TD>
  <TD ALIGN=RIGHT>431,455,958</TD><TD ALIGN=RIGHT>%&nbsp;31.20</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Painted turtle]</TD><TH ALIGN=CENTER>15X</TH>
<TH ALIGN=CENTER>5212367</TH>
  <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.731%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/111 47]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH>
<TH ALIGN=RIGHT>15,932</TH>
<TH ALIGN=RIGHT>15,932</TH>
   <TD ALIGN=RIGHT>1,046,932,099</TD><TD ALIGN=RIGHT>1,032,854,810</TD>
   <TD ALIGN=RIGHT>1,046,932,099</TD><TD ALIGN=RIGHT>1,032,854,810</TD>
Line 461: Line 443:
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/367 48]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/367 46]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH>
<TH ALIGN=RIGHT>70</TH>
<TH ALIGN=RIGHT>70</TH>
   <TD ALIGN=RIGHT>1,233,186,341</TD><TD ALIGN=RIGHT>1,222,864,691</TD>
   <TD ALIGN=RIGHT>1,233,186,341</TD><TD ALIGN=RIGHT>1,222,864,691</TD>
Line 468: Line 450:
<TH ALIGN=CENTER>73657157</TH>
<TH ALIGN=CENTER>73657157</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.599%</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.599%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 47]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH>
<TH ALIGN=RIGHT>5,891</TH>
  <TD ALIGN=RIGHT>1,061,817,101</TD><TD ALIGN=RIGHT>935,922,386</TD>
  <TD ALIGN=RIGHT>125,894,715</TD><TD ALIGN=RIGHT>%&nbsp;6.60</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH>
<TH ALIGN=CENTER>74864452</TH>
  <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.511%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10765 48]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH>
<TH ALIGN=RIGHT>25,212</TH>
  <TD ALIGN=RIGHT>1,117,373,619</TD><TD ALIGN=RIGHT>1,086,614,815</TD>
  <TD ALIGN=RIGHT>30,758,804</TD><TD ALIGN=RIGHT>%&nbsp;19.62</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Budgerigar]</TD><TH ALIGN=CENTER>7X</TH>
<TH ALIGN=CENTER>10614383</TH>
  <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.589%</TD>
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
Line 479: Line 479:
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 50]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/12107 50]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH>
<TH ALIGN=RIGHT>5,891</TH>
<TH ALIGN=RIGHT>80,984</TH>
   <TD ALIGN=RIGHT>1,061,817,101</TD><TD ALIGN=RIGHT>935,922,386</TD>
   <TD ALIGN=RIGHT>2,589,745,704</TD><TD ALIGN=RIGHT>2,158,289,746</TD>
   <TD ALIGN=RIGHT>125,894,715</TD><TD ALIGN=RIGHT>%&nbsp;6.60</TD>
   <TD ALIGN=RIGHT>431,455,958</TD><TD ALIGN=RIGHT>%&nbsp;31.20</TD>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Painted turtle]</TD><TH ALIGN=CENTER>15X</TH>
<TH ALIGN=CENTER>74864452</TH>
<TH ALIGN=CENTER>5212367</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.511%</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>4.731%</TD>
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
Line 515: Line 515:
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 54]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 54]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH>
<TH ALIGN=RIGHT>5,901</TH>
  <TD ALIGN=RIGHT>927,742,539</TD><TD ALIGN=RIGHT>816,084,674</TD>
  <TD ALIGN=RIGHT>111,657,865</TD><TD ALIGN=RIGHT>%&nbsp;25.51</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Nile tilapia]</TD><TH ALIGN=CENTER>269X</TH>
<TH ALIGN=CENTER>2802423</TH>
  <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.957%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 55]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH>
<TH ALIGN=RIGHT>23</TH>
<TH ALIGN=RIGHT>23</TH>
   <TD ALIGN=RIGHT>463,354,448</TD><TD ALIGN=RIGHT>446,627,861</TD>
   <TD ALIGN=RIGHT>463,354,448</TD><TD ALIGN=RIGHT>446,627,861</TD>
Line 533: Line 524:
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.fugu-sg.org/ 56]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.fugu-sg.org/ 55]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH>
<TH ALIGN=RIGHT>6,835</TH>
<TH ALIGN=RIGHT>6,835</TH>
   <TD ALIGN=RIGHT>391,484,715</TD><TD ALIGN=RIGHT>350,961,831</TD>
   <TD ALIGN=RIGHT>391,484,715</TD><TD ALIGN=RIGHT>350,961,831</TD>
Line 540: Line 531:
<TH ALIGN=CENTER>11516971</TH>
<TH ALIGN=CENTER>11516971</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.789%</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.789%</TD>
<TD ALIGN=RIGHT>5000</TD>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/59571 56]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH>
<TH ALIGN=RIGHT>5,678</TH>
  <TD ALIGN=RIGHT>927,696,114</TD><TD ALIGN=RIGHT>816,084,674</TD>
  <TD ALIGN=RIGHT>111,611,440</TD><TD ALIGN=RIGHT>%&nbsp;25.51</TD>
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Nile tilapia]</TD><TH ALIGN=CENTER>269X</TH>
<TH ALIGN=CENTER>27159252</TH>
  <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.957%</TD>
<TD ALIGN=RIGHT>5000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>loose</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>

Latest revision as of 20:34, 16 April 2012

see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-test browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order
count/
ftp src		 ucsc
db name/
genome-test		 chrom
count		 total
size		 non-N
bases		 N base
count		 % masked common name/
src info		 coverage N50
chrom.sizes		 alignment type % of mm10
matched
(chainLink table)		 chain
minScore		 chain
linearGap
01mm10 66 2,730,871,7742,652,783,500 78,088,274% 45.18 Mouse20X 130694993 N/AN/A N/A N/A
02rn5 2,739 2,909,698,9382,572,853,723 336,845,215% 42.81 Rat6X 154597545 SyntenicNet67.353% 5000 medium
03speTri2 12,483 2,478,393,7702,311,060,300 167,333,470% 36.27 Squirrel495X 8192786 SyntenicNet34.217% 3000 medium
04dipOrd1 210,053 2,158,502,0981,844,961,421 313,540,677% 28.28 Kangaroo rat2X 36427 RecipBest19.460% 3000 medium
05hetGla2 4,229 2,618,204,6392,314,771,103 303,433,536% 32.31 Naked mole rat90X 20532749 SyntenicNet32.753% 3000 medium
06cavPor3 3,144 2,723,219,6412,663,369,733 59,849,908% 27.53 Guinea pig6.76X 27942054 SyntenicNet28.447% 3000 medium
07oryCun2 3,242 2,737,490,5012,604,023,284 133,467,217% 43.74 Rabbit6.51X 111795807 SyntenicNet25.248% 3000 medium
08ochPri2 187,558 3,445,784,3541,923,624,051 1,522,160,303% 11.44 Pika2X 88760 RecipBest14.542% 3000 medium
09tupBel1 150,851 3,660,774,9572,137,225,476 1,523,549,481% 20.43 Tree shrew2X 127888 RecipBest19.766% 3000 medium
10hg19 93 3,137,161,2642,897,310,462 239,850,802% 50.63 Human20X 146364022 SyntenicNet38.226% 3000 medium
11gorGor3 46,823 3,029,553,6462,822,760,080 206,793,566% 48.80 Gorilla2.1X 145327772 SyntenicNet33.987% 3000 medium
12panTro4 24,129 3,309,577,9222,902,338,967 407,238,955% 51.29 Chimp6X 143986469 SyntenicNet34.674% 3000 medium
13nomLeu2 17,976 2,936,052,6032,756,609,047 179,443,556% 51.44 Gibbon5.6X 22692035 SyntenicNet34.031% 3000 medium
14ponAbe2 55 3,446,771,3963,093,543,172 353,228,224% 50.89 Orangutan6X 135191526 SyntenicNet34.496% 3000 medium
15tarSyr1 656,709 3,179,905,1322,768,536,343 411,368,789% 41.75 Tarsier2X 12214 RecipBest24.560% 3000 medium
16rheMac3 34,103 2,969,988,1802,639,145,830 330,842,350% 48.54 Chinese rhesus50X 150158102 SyntenicNet33.931% 3000 medium
17papHam1 387,374 2,867,564,6542,741,849,051 125,715,603% 48.70 Baboon5.3X 88525 RecipBest33.577% 3000 medium
18otoGar3 7,793 2,519,724,5502,359,530,453 160,194,097% 39.51 Bushbaby137X 13852661 SyntenicNet29.795% 3000 medium
19calJac3 14,205 2,914,958,5442,752,505,800 162,452,744% 47.71 Marmoset6X 132174527 SyntenicNet32.450% 3000 medium
20micMur1 185,042 2,902,270,7361,852,394,361 1,049,876,375% 37.31 Mouse lemur2X 140884 RecipBest26.636% 3000 medium
21saiBol1 2,685 2,608,572,0642,477,131,095 131,440,969% 46.69 Squirrel monkey80X 18744880 SyntenicNet32.339% 3000 medium
22equCab2 34 2,484,532,0622,428,790,173 55,741,889% 40.97 Horse6.8X 91571448 SyntenicNet34.415% 3000 medium
23vicPac1 298,413 2,962,253,6081,922,910,435 1,039,343,173% 32.24 Alpaca2X 230521 RecipBest22.636% 3000 medium
24turTru2 240,901 2,551,996,5732,332,402,443 219,594,130% 43.56 Dolphin3.5X 116261 RecipBest30.267% 3000 medium
25susScr3 4,583 2,808,525,9912,518,987,191 289,538,800% 44.30 Pig24X 148491826 SyntenicNet25.685% 3000 medium
26bosTau7 11,692 2,981,119,5792,804,673,174 176,446,405% 49.56 Cow7.1X 85119472 SyntenicNet26.255% 3000 medium
27oviAri1 1,218 2,860,512,9831,201,271,277 1,659,241,706% 20.52 Sheep3X 100831284 RecipBest15.341% 3000 medium
28pteVam1 96,944 1,996,076,4101,839,436,660 156,639,750% 31.75 Megabat2X 124060 RecipBest27.345% 3000 medium
29myoLuc2 11,654 2,034,575,3001,966,419,868 68,155,432% 33.71 Microbat2.18X 4293315 SyntenicNet24.363% 3000 medium
30felCat5 5,500 2,455,541,1362,364,296,207 91,244,929% 43.24 Cat12X 148491654 RecipBest29.725% 3000 medium
31canFam3 3,268 2,410,976,8752,392,715,236 18,261,639% 43.01 Dog7.6X 63241923 SyntenicNet29.144% 3000 medium
32ailMel1 81,467 2,299,509,0152,245,312,831 54,196,184% 38.96 Panda73X 1281781 SyntenicNet30.979% 3000 medium
33eriEur1 379,802 3,367,787,3582,133,134,836 1,234,652,522% 50.89 Hedgehog2X 33565 RecipBest9.856% 3000 medium
34sorAra1 262,057 2,936,119,0081,832,864,697 1,103,254,311% 39.07 Shrew2X 47941 RecipBest9.382% 3000 medium
35choHof1 481,259 2,458,927,6202,060,419,685 398,507,935% 35.67 Sloth2X 9667 RecipBest18.019% 3000 medium
36dasNov3 46,559 3,631,522,7113,299,882,028 331,640,683% 49.28 Armadillo6X 1687935 RecipBest25.201% 3000 medium
37proCap1 295,006 2,985,258,9992,407,847,681 577,411,318% 28.11 Rock hyrax2X 24297 RecipBest15.147% 3000 medium
38echTel1 325,491 3,823,724,7282,111,581,369 1,712,143,359% 13.84 Tenrec2X 48377 RecipBest10.947% 3000 medium
39triMan1 6,323 3,103,808,4062,769,099,677 334,708,729% 36.24 Manatee150X 14442683 SyntenicNet26.546% 3000 medium
40loxAfr3 2,353 3,196,760,8333,118,565,340 78,195,493% 47.63 Elephant7X 46401353 SyntenicNet25.823% 3000 medium
41macEug2 277,711 3,075,184,0242,536,076,954 539,107,070% 47.39 Wallaby2X 36602 RecipBest4.353% 3000 medium
42sarHar1 35,974 3,174,693,0102,931,539,702 243,153,308% 39.66 Tasmanian devil85X 1847106 Net8.479% 5000 loose
43monDom5 11 3,605,631,7283,501,660,299 103,971,429% 55.95 Opossum6.8X 527952102 Net9.584% 5000 loose
44ornAna1 201,523 1,996,811,2121,842,235,522 154,575,690% 47.89 Platypus6X 991605 Net5.348% 5000 loose
45galGal4 15,932 1,046,932,0991,032,854,810 14,077,289% 20.41 Chicken12X 90216835 Net3.676% 5000 loose
46taeGut1 70 1,233,186,3411,222,864,691 10,321,650% 20.42 Zebra finch6X 73657157 Net3.599% 5000 loose
47melGal1 5,891 1,061,817,101935,922,386 125,894,715% 6.60 Turkey5X 74864452 Net3.511% 5000 loose
48melUnd1 25,212 1,117,373,6191,086,614,815 30,758,804% 19.62 Budgerigar7X 10614383 Net3.589% 5000 loose
49anoCar2 6,457 1,799,143,5871,701,353,767 97,789,820% 41.98 Lizard7.1X 150641573 Net3.331% 5000 loose
50chrPic1 80,984 2,589,745,7042,158,289,746 431,455,958% 31.20 Painted turtle15X 5212367 Net4.731% 5000 loose
51xenTro3 19,550 1,511,735,3261,358,334,882 153,400,444% 24.55 X. tropicalis7.65X 1567461 Net3.125% 5000 loose
52latCha1 22,819 2,860,591,9212,183,592,768 676,999,153% 45.68 Coelacanth77.5X 924513 Net2.715% 5000 loose
53gadMor1 427,428 824,327,835608,038,555 216,289,280% 31.25 Atlantic cod40X 393166 Net1.726% 5000 loose
54gasAcu1 23 463,354,448446,627,861 16,726,587% 2.58 Stickleback6X 20083130 Net2.016% 5000 loose
55fr3 6,835 391,484,715350,961,831 40,522,884% 19.01 Fugu8.5X 11516971 Net1.789% 5000 loose
56oreNil2 5,678 927,696,114816,084,674 111,611,440% 25.51 Nile tilapia269X 27159252 Net1.957% 5000 loose
57tetNig2 27 358,618,246302,314,788 56,303,458% 20.27 Tetraodon7.9X 13390619 Net1.735% 5000 loose
58danRer7 1,133 1,412,464,8431,409,770,109 2,694,734% 52.06 Zebrafish30X 54093808 Net2.602% 5000 loose
59oryLat2 7,189 869,000,216700,386,597 168,613,619% 33.09 Medaka10.6X 29908082 Net1.936% 5000 loose
60petMar1 108,241 1,027,258,967831,696,438 195,562,529% 40.67 Lamprey5.9X 14239 Net1.101% 5000 loose
Retrieved from "https://genomewiki.ucsc.edu/index.php?title=Mm10_Genome_size_statistics&oldid=19498"