Hg38 100-way conservation lastz parameters: Difference between revisions
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<TD>2014-12-12</TD><TD ALIGN=RIGHT>86.379%</TD> | <TD>2014-12-12</TD><TD ALIGN=RIGHT>86.379%</TD> | ||
<TD ALIGN=RIGHT>90.470%</TD></TR> | <TD ALIGN=RIGHT>90.470%</TD></TR> | ||
<TR> | |||
<TH>Rhesus rheMac3</TH> | |||
<TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD> | |||
<TD>15000</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD> | |||
<TD>2015-04-09</TD><TD ALIGN=RIGHT>80.828%</TD> | |||
<TD ALIGN=RIGHT>88.220%</TD></TR> | |||
<TR> | <TR> | ||
<TH>Crab-eating macaque macFas5</TH> | <TH>Crab-eating macaque macFas5</TH> | ||
| Line 82: | Line 88: | ||
<TD>2014-12-14</TD><TD ALIGN=RIGHT>85.675%</TD> | <TD>2014-12-14</TD><TD ALIGN=RIGHT>85.675%</TD> | ||
<TD ALIGN=RIGHT>87.749%</TD></TR> | <TD ALIGN=RIGHT>87.749%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Baboon papAnu2</TH> | <TH>Baboon papAnu2</TH> | ||
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<TD>2014-12-13</TD><TD ALIGN=RIGHT>84.179%</TD> | <TD>2014-12-13</TD><TD ALIGN=RIGHT>84.179%</TD> | ||
<TD ALIGN=RIGHT>84.502%</TD></TR> | <TD ALIGN=RIGHT>84.502%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Green monkey chlSab2</TH> | <TH>Green monkey chlSab2</TH> | ||
| Line 113: | Line 107: | ||
<TD ALIGN=RIGHT>76.757%</TD></TR> | <TD ALIGN=RIGHT>76.757%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Squirrel monkey saiBol1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.saiBol1.tuning.Q.txt</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD> | ||
<TD> | <TD>2014-12-13</TD><TD ALIGN=RIGHT>70.565%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>81.466%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Bushbaby otoGar3</TH> | <TH>Bushbaby otoGar3</TH> | ||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD> | ||
<TD> | <TD>2015-02-23</TD><TD ALIGN=RIGHT>53.196%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>64.899%</TD></TR> | ||
<TR> | |||
<TH>Chinese tree shrew tupChi1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>45.256%</TD> | |||
<TD ALIGN=RIGHT>50.350%</TD></TR> | |||
<TR> | |||
<TH>Squirrel speTri2</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>48.283%</TD> | |||
<TD ALIGN=RIGHT>61.854%</TD></TR> | |||
<TR> | |||
<TH>Lesser Egyptian jerboa jacJac1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>34.153%</TD> | |||
<TD ALIGN=RIGHT>40.300%</TD></TR> | |||
<TR> | |||
<TH>Prairie vole micOch1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-14</TD><TD ALIGN=RIGHT>31.489%</TD> | |||
<TD ALIGN=RIGHT>43.539%</TD></TR> | |||
<TR> | |||
<TH>Chinese hamster criGri1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-20</TD><TD ALIGN=RIGHT>33.169%</TD> | |||
<TD ALIGN=RIGHT>42.426%</TD></TR> | |||
<TR> | |||
<TH>Golden hamster mesAur1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>30.803%</TD> | |||
<TD ALIGN=RIGHT>43.095%</TD></TR> | |||
<TR> | |||
<TH>Mouse mm10</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-09</TD><TD ALIGN=RIGHT>31.653%</TD> | |||
<TD ALIGN=RIGHT>35.372%</TD></TR> | |||
<TR> | |||
<TH>Rat rn6</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-14</TD><TD ALIGN=RIGHT>31.077%</TD> | |||
<TD ALIGN=RIGHT>34.899%</TD></TR> | |||
<TR> | |||
<TH>Naked mole-rat hetGla2</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>46.248%</TD> | |||
<TD ALIGN=RIGHT>58.855%</TD></TR> | |||
<TR> | <TR> | ||
<TH> | <TH>Guinea pig cavPor3</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-28</TD><TD ALIGN=RIGHT>42.371%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>48.000%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Chinchilla chiLan1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-28</TD><TD ALIGN=RIGHT>45.665%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>58.002%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Brush-tailed rat octDeg1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-24</TD><TD ALIGN=RIGHT>40.238%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>47.651%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Rabbit oryCun2</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-28</TD><TD ALIGN=RIGHT>42.911%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>48.360%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Pika ochPri3</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-28</TD><TD ALIGN=RIGHT>33.618%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>49.837%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Pig susScr3</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-29</TD><TD ALIGN=RIGHT>44.676%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>57.273%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Alpaca vicPac2</TH> | <TH>Alpaca vicPac2</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-29</TD><TD ALIGN=RIGHT>48.909%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>68.755%</TD></TR> | ||
<TR> | |||
<TH>Bactrian camel camFer1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-24</TD><TD ALIGN=RIGHT>49.095%</TD> | |||
<TD ALIGN=RIGHT>71.268%</TD></TR> | |||
<TR> | <TR> | ||
<TH>Dolphin turTru2</TH> | <TH>Dolphin turTru2</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>49.728%</TD> | |||
<TD ALIGN=RIGHT>61.393%</TD></TR> | |||
<TD>9400</TD><TD>lastz-distrib-1.03. | |||
<TD> | |||
<TD ALIGN=RIGHT> | |||
<TR> | <TR> | ||
<TH>Killer whale orcOrc1</TH> | <TH>Killer whale orcOrc1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-29</TD><TD ALIGN=RIGHT>50.709%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>64.364%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Tibetan antelope panHod1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-28</TD><TD ALIGN=RIGHT>45.619%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>52.526%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Cow bosTau8</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2014-10-16</TD><TD ALIGN=RIGHT>45.975%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>50.440%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Sheep oviAri3</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD> | ||
<TD>2015- | <TD>2015-04-27</TD><TD ALIGN=RIGHT>45.352%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>51.787%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Domestic goat capHir1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-28</TD><TD ALIGN=RIGHT>45.257%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>52.668%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Horse equCab2</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-23</TD><TD ALIGN=RIGHT>55.459%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>66.600%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>White rhinoceros cerSim1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-23</TD><TD ALIGN=RIGHT>56.633%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>69.232%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Cat felCat8</TH> | <TH>Cat felCat8</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-29</TD><TD ALIGN=RIGHT>51.684%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>58.750%</TD></TR> | ||
<TR> | |||
<TH>Dog canFam3</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-10</TD><TD ALIGN=RIGHT>50.395%</TD> | |||
<TD ALIGN=RIGHT>60.861%</TD></TR> | |||
<TR> | |||
<TH>Ferret musFur1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>49.631%</TD> | |||
<TD ALIGN=RIGHT>62.396%</TD></TR> | |||
<TR> | <TR> | ||
<TH>Panda ailMel1</TH> | <TH>Panda ailMel1</TH> | ||
| Line 233: | Line 293: | ||
<TD ALIGN=RIGHT>61.650%</TD></TR> | <TD ALIGN=RIGHT>61.650%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Pacific walrus odoRosDiv1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-04-29</TD><TD ALIGN=RIGHT>52.193%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>64.897%</TD></TR> | ||
<TR> | |||
<TH>Weddell seal lepWed1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>51.073%</TD> | |||
<TD ALIGN=RIGHT>65.642%</TD></TR> | |||
<TR> | |||
<TH>Black flying-fox pteAle1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>48.281%</TD> | |||
<TD ALIGN=RIGHT>71.168%</TD></TR> | |||
<TR> | |||
<TH>Megabat pteVam1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>43.924%</TD> | |||
<TD ALIGN=RIGHT>69.545%</TD></TR> | |||
<TR> | |||
<TH>Big brown bat eptFus1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-24</TD><TD ALIGN=RIGHT>39.123%</TD> | |||
<TD ALIGN=RIGHT>62.229%</TD></TR> | |||
<TR> | |||
<TH>David's myotis (bat) myoDav1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-28</TD><TD ALIGN=RIGHT>38.713%</TD> | |||
<TD ALIGN=RIGHT>60.286%</TD></TR> | |||
<TR> | |||
<TH>Microbat myoLuc2</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-28</TD><TD ALIGN=RIGHT>38.591%</TD> | |||
<TD ALIGN=RIGHT>59.729%</TD></TR> | |||
<TR> | |||
<TH>Hedgehog eriEur2</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>25.488%</TD> | |||
<TD ALIGN=RIGHT>31.297%</TD></TR> | |||
<TR> | |||
<TH>Shrew sorAra2</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-20</TD><TD ALIGN=RIGHT>26.905%</TD> | |||
<TD ALIGN=RIGHT>35.760%</TD></TR> | |||
<TR> | |||
<TH>Star-nosed mole conCri1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>35.911%</TD> | |||
<TD ALIGN=RIGHT>61.017%</TD></TR> | |||
<TR> | |||
<TH>Elephant loxAfr3</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>45.214%</TD> | |||
<TD ALIGN=RIGHT>42.303%</TD></TR> | |||
<TR> | |||
<TH>Cape elephant shrew eleEdw1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>26.839%</TD> | |||
<TD ALIGN=RIGHT>24.181%</TD></TR> | |||
<TR> | |||
<TH>Manatee triMan1</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>45.346%</TD> | |||
<TD ALIGN=RIGHT>46.939%</TD></TR> | |||
<TR> | |||
<TH>Cape golden mole chrAsi1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-20</TD><TD ALIGN=RIGHT>33.314%</TD> | |||
<TD ALIGN=RIGHT>29.068%</TD></TR> | |||
<TR> | |||
<TH>Tenrec echTel2</TH> | |||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>29.310%</TD> | |||
<TD ALIGN=RIGHT>32.753%</TD></TR> | |||
<TR> | <TR> | ||
<TH> | <TH>Aardvark oryAfe1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-04-23</TD><TD ALIGN=RIGHT>40.563%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>34.102%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Armadillo dasNov3</TH> | <TH>Armadillo dasNov3</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03. | <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>45.349%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>41.895%</TD></TR> | ||
<TR> | |||
<TH>Opossum monDom5</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2014-05-29</TD><TD ALIGN=RIGHT>14.370%</TD> | |||
<TD ALIGN=RIGHT>11.996%</TD></TR> | |||
<TR> | <TR> | ||
<TH> | <TH>Tasmanian devil sarHar1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-14</TD><TD ALIGN=RIGHT>12.754%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>12.925%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Wallaby macEug2</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>6.378%</TD> | |||
<TD ALIGN=RIGHT>7.213%</TD></TR> | |||
<TR> | |||
<TH>Platypus ornAna1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-13</TD><TD ALIGN=RIGHT>7.769%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>11.784%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Rock pigeon colLiv1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.712%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>10.220%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Saker falcon falChe1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.828%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>9.878%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Peregrine falcon falPer1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.926%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>10.027%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Collared flycatcher ficAlb2</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>4.822%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>10.748%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>White-throated sparrow zonAlb1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>4.494%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>10.570%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Medium ground finch geoFor1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015- | <TD>2015-02-19</TD><TD ALIGN=RIGHT>4.445%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>10.366%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Zebra finch taeGut2</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-19</TD><TD ALIGN=RIGHT>5.893%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>12.356%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Tibetan ground jay pseHum1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>5.146%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>11.937%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Budgerigar melUnd1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>4.474%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>9.862%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Parrot amaVit1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.186%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>9.480%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Scarlet Macaw araMac1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-17</TD><TD ALIGN=RIGHT>3.787%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>9.039%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Mallard duck anaPla1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.268%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>9.679%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Chicken galGal4</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.696%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>10.888%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Turkey melGal1</TH> | ||
<TD>no</TD><TD>50</TD><TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.328%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>10.927%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>American alligator allMis1</TH> | ||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03. | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2015-02-14</TD><TD ALIGN=RIGHT>7.561%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>8.665%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Green seaturtle cheMyd1</TH> | <TH>Green seaturtle cheMyd1</TH> | ||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
| Line 408: | Line 522: | ||
<TR> | <TR> | ||
<TH>Chinese softshell turtle pelSin1</TH> | <TH>Chinese softshell turtle pelSin1</TH> | ||
<TD | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
</ | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
< | <TD>2015-02-14</TD><TD ALIGN=RIGHT>5.716%</TD> | ||
<TD | <TD ALIGN=RIGHT>7.207%</TD></TR> | ||
</TR><TR> | <TR> | ||
<TH> | <TH>Spiny softshell turtle apaSpi1</TH> | ||
<TD | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
</ | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
< | <TD>2015-02-14</TD><TD ALIGN=RIGHT>4.611%</TD> | ||
<TD ALIGN=RIGHT>6.320%</TD></TR> | |||
</ | <TR> | ||
< | |||
<TD | |||
</TR><TR> | |||
<TH>Lizard anoCar2</TH> | <TH>Lizard anoCar2</TH> | ||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
| Line 428: | Line 539: | ||
<TD ALIGN=RIGHT>5.222%</TD></TR> | <TD ALIGN=RIGHT>5.222%</TD></TR> | ||
<TR> | <TR> | ||
<TH>X. tropicalis xenTro7</TH> | <TH>X. tropicalis xenTro7</TH> | ||
<TD | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
</TR><TR> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>3.811%</TD> | |||
<TD ALIGN=RIGHT>7.967%</TD></TR> | |||
<TR> | |||
<TH>Coelacanth latCha1</TH> | <TH>Coelacanth latCha1</TH> | ||
<TD | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
</TR><TR> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TH> | <TD>2015-02-20</TD><TD ALIGN=RIGHT>2.873%</TD> | ||
<TD | <TD ALIGN=RIGHT>3.449%</TD></TR> | ||
</TR><TR> | <TR> | ||
<TH> | <TH>Tetraodon tetNig2</TH> | ||
<TD | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
</TR><TR> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>1.743%</TD> | |||
<TD ALIGN=RIGHT>14.323%</TD></TR> | |||
<TR> | |||
<TH>Fugu fr3</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>1.784%</TD> | |||
<TD ALIGN=RIGHT>12.394%</TD></TR> | |||
<TR> | |||
<TH>Yellowbelly pufferfish takFla1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>1.548%</TD> | |||
<TD ALIGN=RIGHT>11.317%</TD></TR> | |||
<TR> | |||
<TH>Nile tilapia oreNil2</TH> | <TH>Nile tilapia oreNil2</TH> | ||
<TD | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
</ | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
< | <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.868%</TD> | ||
<TD | <TD ALIGN=RIGHT>6.241%</TD></TR> | ||
</TR><TR> | <TR> | ||
<TH>Princess of Burundi neoBri1</TH> | <TH>Princess of Burundi neoBri1</TH> | ||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.767%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>6.840%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Burton's mouthbreeder hapBur1</TH> | ||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2015-02- | <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.783%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>6.861%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Zebra Mbuna mayZeb1</TH> | <TH>Zebra Mbuna mayZeb1</TH> | ||
| Line 535: | Line 610: | ||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>1.898%</TD> | <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.898%</TD> | ||
<TD ALIGN=RIGHT>7.435%</TD></TR> | <TD ALIGN=RIGHT>7.435%</TD></TR> | ||
<TR> | |||
<TH>Stickleback gasAcu1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>2.080%</TD> | |||
<TD ALIGN=RIGHT>11.956%</TD></TR> | |||
<TR> | |||
<TH>Atlantic cod gadMor1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>1.660%</TD> | |||
<TD ALIGN=RIGHT>6.911%</TD></TR> | |||
<TR> | |||
<TH>Zebrafish danRer10</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-08</TD><TD ALIGN=RIGHT>3.357%</TD> | |||
<TD ALIGN=RIGHT>7.110%</TD></TR> | |||
<TR> | |||
<TH>Mexican tetra (cavefish) astMex1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>2.225%</TD> | |||
<TD ALIGN=RIGHT>6.365%</TD></TR> | |||
<TR> | |||
<TH>Spotted gar lepOcu1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>2.511%</TD> | |||
<TD ALIGN=RIGHT>6.634%</TD></TR> | |||
<TR> | |||
<TH>Lamprey petMar2</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>1.265%</TD> | |||
<TD ALIGN=RIGHT>3.960%</TD></TR> | |||
</TABLE> | </TABLE> | ||
Latest revision as of 19:57, 14 May 2015
See Also
- Human 100-way Hg38 100-way Genome size statistics
- Human 100-way Hg38 100-way conservation alignment
- all other UCSC Multiple Alignments
| The default scoring matrix is: | The HoxD55 scoring matrix is: | The human-chimp.v2 scoring matrix is: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
O=400 E=30 |
O=400 E=30 |
O=600 E=150 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of hg38 matched (chainLink table) |
% of query matched (chainLinkHg38) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chimp panTro4 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz-distrib-1.03.52/bin/lastz | 150 | 2000 | 600 | 2 | 2014-05-27 | 93.112% | 95.664% |
| Gorilla gorGor3 | no | 254 | 3000 | 3000 | hg38.gorGor3.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-15 | 88.005% | 91.695% |
| Orangutan ponAbe2 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz-distrib-1.03.52/bin/lastz | 150 | 2000 | 600 | 2 | 2014-09-02 | 89.187% | 89.656% |
| Gibbon nomLeu3 | no | 254 | 3000 | 3000 | hg38.nomLeu3.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-12 | 86.379% | 90.470% |
| Rhesus rheMac3 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz-distrib-1.03.66/bin/lastz | 150 | 2000 | 600 | 2 | 2015-04-09 | 80.828% | 88.220% |
| Crab-eating macaque macFas5 | no | 254 | 3000 | 3000 | hg38.macFas5.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-14 | 85.675% | 87.749% |
| Baboon papAnu2 | no | 254 | 3000 | 3000 | hg38.papAnu2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 84.179% | 84.502% |
| Green monkey chlSab2 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz-distrib-1.03.52/bin/lastz | 150 | 2000 | 600 | 2 | 2014-07-11 | 84.393% | 88.264% |
| Marmoset calJac3 | no | 254 | 3000 | 3000 | hg38.calJac3.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 71.709% | 76.757% |
| Squirrel monkey saiBol1 | no | 254 | 3000 | 3000 | hg38.saiBol1.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 70.565% | 81.466% |
| Bushbaby otoGar3 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 2 | 2015-02-23 | 53.196% | 64.899% |
| Chinese tree shrew tupChi1 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 45.256% | 50.350% |
| Squirrel speTri2 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 48.283% | 61.854% |
| Lesser Egyptian jerboa jacJac1 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 34.153% | 40.300% |
| Prairie vole micOch1 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-14 | 31.489% | 43.539% |
| Chinese hamster criGri1 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-20 | 33.169% | 42.426% |
| Golden hamster mesAur1 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 30.803% | 43.095% |
| Mouse mm10 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-09 | 31.653% | 35.372% |
| Rat rn6 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-14 | 31.077% | 34.899% |
| Naked mole-rat hetGla2 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 46.248% | 58.855% |
| Guinea pig cavPor3 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-28 | 42.371% | 48.000% |
| Chinchilla chiLan1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-28 | 45.665% | 58.002% |
| Brush-tailed rat octDeg1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-24 | 40.238% | 47.651% |
| Rabbit oryCun2 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-28 | 42.911% | 48.360% |
| Pika ochPri3 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-28 | 33.618% | 49.837% |
| Pig susScr3 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 44.676% | 57.273% |
| Alpaca vicPac2 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 48.909% | 68.755% |
| Bactrian camel camFer1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-24 | 49.095% | 71.268% |
| Dolphin turTru2 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 49.728% | 61.393% |
| Killer whale orcOrc1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 50.709% | 64.364% |
| Tibetan antelope panHod1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-28 | 45.619% | 52.526% |
| Cow bosTau8 | no | 254 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2014-10-16 | 45.975% | 50.440% |
| Sheep oviAri3 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 2 | 2015-04-27 | 45.352% | 51.787% |
| Domestic goat capHir1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-28 | 45.257% | 52.668% |
| Horse equCab2 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-23 | 55.459% | 66.600% |
| White rhinoceros cerSim1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-23 | 56.633% | 69.232% |
| Cat felCat8 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 51.684% | 58.750% |
| Dog canFam3 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-10 | 50.395% | 60.861% |
| Ferret musFur1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 49.631% | 62.396% |
| Panda ailMel1 | no | 50 | 3000 | 3000 | hg38.ailMel1.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-12 | 48.226% | 61.650% |
| Pacific walrus odoRosDiv1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 52.193% | 64.897% |
| Weddell seal lepWed1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 51.073% | 65.642% |
| Black flying-fox pteAle1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 48.281% | 71.168% |
| Megabat pteVam1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 43.924% | 69.545% |
| Big brown bat eptFus1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-24 | 39.123% | 62.229% |
| David's myotis (bat) myoDav1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-28 | 38.713% | 60.286% |
| Microbat myoLuc2 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-28 | 38.591% | 59.729% |
| Hedgehog eriEur2 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 25.488% | 31.297% |
| Shrew sorAra2 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-20 | 26.905% | 35.760% |
| Star-nosed mole conCri1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 35.911% | 61.017% |
| Elephant loxAfr3 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 45.214% | 42.303% |
| Cape elephant shrew eleEdw1 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 26.839% | 24.181% |
| Manatee triMan1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 45.346% | 46.939% |
| Cape golden mole chrAsi1 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-20 | 33.314% | 29.068% |
| Tenrec echTel2 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 29.310% | 32.753% |
| Aardvark oryAfe1 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-23 | 40.563% | 34.102% |
| Armadillo dasNov3 | no | 254 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-29 | 45.349% | 41.895% |
| Opossum monDom5 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.52/bin/lastz | 30 | 2000 | 400 | 1 | 2014-05-29 | 14.370% | 11.996% |
| Tasmanian devil sarHar1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-14 | 12.754% | 12.925% |
| Wallaby macEug2 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 6.378% | 7.213% |
| Platypus ornAna1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-13 | 7.769% | 11.784% |
| Rock pigeon colLiv1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-13 | 4.712% | 10.220% |
| Saker falcon falChe1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-13 | 4.828% | 9.878% |
| Peregrine falcon falPer1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-13 | 4.926% | 10.027% |
| Collared flycatcher ficAlb2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 4.822% | 10.748% |
| White-throated sparrow zonAlb1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 4.494% | 10.570% |
| Medium ground finch geoFor1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 4.445% | 10.366% |
| Zebra finch taeGut2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 5.893% | 12.356% |
| Tibetan ground jay pseHum1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 5.146% | 11.937% |
| Budgerigar melUnd1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 4.474% | 9.862% |
| Parrot amaVit1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-13 | 4.186% | 9.480% |
| Scarlet Macaw araMac1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-17 | 3.787% | 9.039% |
| Mallard duck anaPla1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-13 | 4.268% | 9.679% |
| Chicken galGal4 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-13 | 4.696% | 10.888% |
| Turkey melGal1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-13 | 4.328% | 10.927% |
| American alligator allMis1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-14 | 7.561% | 8.665% |
| Green seaturtle cheMyd1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-06 | 6.296% | 7.960% |
| Painted turtle chrPic2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-06 | 6.708% | 8.554% |
| Chinese softshell turtle pelSin1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-14 | 5.716% | 7.207% |
| Spiny softshell turtle apaSpi1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-14 | 4.611% | 6.320% |
| Lizard anoCar2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-06 | 3.593% | 5.222% |
| X. tropicalis xenTro7 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 3.811% | 7.967% |
| Coelacanth latCha1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-20 | 2.873% | 3.449% |
| Tetraodon tetNig2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 1.743% | 14.323% |
| Fugu fr3 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 1.784% | 12.394% |
| Yellowbelly pufferfish takFla1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 1.548% | 11.317% |
| Nile tilapia oreNil2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 1.868% | 6.241% |
| Princess of Burundi neoBri1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 1.767% | 6.840% |
| Burton's mouthbreeder hapBur1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 1.783% | 6.861% |
| Zebra Mbuna mayZeb1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-07 | 1.805% | 6.780% |
| Pundamilia nyererei punNye1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-06 | 1.787% | 6.864% |
| Medaka oryLat2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-06 | 2.002% | 6.853% |
| Southern platyfish xipMac1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-06 | 1.898% | 7.435% |
| Stickleback gasAcu1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 2.080% | 11.956% |
| Atlantic cod gadMor1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 1.660% | 6.911% |
| Zebrafish danRer10 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-08 | 3.357% | 7.110% |
| Mexican tetra (cavefish) astMex1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-18 | 2.225% | 6.365% |
| Spotted gar lepOcu1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-19 | 2.511% | 6.634% |
| Lamprey petMar2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-06 | 1.265% | 3.960% |
