RefSeq mammals browser status: Difference between revisions

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(fixup names for TBD assemblies)
(updated mammals with more photographs)
 
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* [[RefSeq fish browser status]]
* [[RefSeq fish browser status]]
* [[RefSeq aves browser status]]
* [[RefSeq aves browser status]]
* [[RefSeq assemblies clade survey]]
== table ==
== table ==
{| border='1' style='border-collapse:collapse' class='wikitable sortable'
{| border='1' style='border-collapse:collapse' class='wikitable sortable'
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| ictTri1 TBD
| ictTri1 TBD
| ictTri1 TBD
| ictTri1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Ictidomys_tridecemlineatus.jpg Ictidomys_tridecemlineatus.jpg]
|-
|-
! 24
! 24
Line 224: Line 225:
| bosInd1 TBD
| bosInd1 TBD
| bosInd1 TBD
| bosInd1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Bos_indicus.jpg Bos_indicus.jpg]
|-
|-
! 27
! 27
Line 231: Line 232:
| Degu
| Degu
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1(1)]
| octDeg1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Octodon_degus.jpg Octodon_degus.jpg]
|-
|-
! 28
! 28
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| Star-nosed mole
| Star-nosed mole
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1(1)]
| conCri1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Condylura_cristata.jpg Condylura_cristata.jpg]
|-
|-
! 29
! 29
Line 255: Line 256:
| Lesser Egyptian jerboa
| Lesser Egyptian jerboa
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1(1)]
| jacJac1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Jaculus_jaculus.jpg Jaculus_jaculus.jpg]
|-
|-
! 31
! 31
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| Cape golden mole
| Cape golden mole
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1(1)]
| chrAsi1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Chrysochloris_asiatica.jpg Chrysochloris_asiatica.jpg]
|-
|-
! 34
! 34
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| Aardvark
| Aardvark
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1(1)]
| oryAfe1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Orycteropus_afer_afer.jpg Orycteropus_afer_afer.jpg]
|-
|-
! 36
! 36
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosMut1 bosMut1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosMut1 bosMut1(1)]
| bosMut1 TBD
| bosMut1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Bos_mutus.jpg Bos_mutus.jpg]
|-
|-
! 37
! 37
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| Big brown bat
| Big brown bat
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1(1)]
| eptFus1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Eptesicus_fuscus.jpg Eptesicus_fuscus.jpg]
|-
|-
! 40
! 40
Line 359: Line 360:
| Walrus
| Walrus
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1(1)]
| odoRosDiv1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Odobenus_rosmarus_divergens.jpg Odobenus_rosmarus_divergens.jpg]
|-
|-
! 44
! 44
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| Golden hamster
| Golden hamster
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1(1)]
| mesAur1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Mesocricetus_auratus.jpg Mesocricetus_auratus.jpg]
|-
|-
! 49
! 49
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| Weddell seal
| Weddell seal
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1(1)]
| lepWed1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Leptonychotes_weddellii.jpg Leptonychotes_weddellii.jpg]
|-
|-
! 50
! 50
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1 lipVex1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1 lipVex1(1)]
| lipVex1 TBD
| lipVex1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Lipotes_vexillifer.jpg Lipotes_vexillifer.jpg]
|-
|-
! 53
! 53
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bubBub1 bubBub1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bubBub1 bubBub1(1)]
| bubBub1 TBD
| bubBub1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Bubalus_bubalis.jpg Bubalus_bubalis.jpg]
|-
|-
! 55
! 55
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phyCat1 phyCat1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phyCat1 phyCat1(1)]
| phyCat1 TBD
| phyCat1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Physeter_catodon.jpg Physeter_catodon.jpg]
|-
|-
! 56
! 56
Line 472: Line 473:
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=perManBai1 perManBai1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=perManBai1 perManBai1(1)]
| perManBai1 TBD
| perManBai1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Peromyscus_maniculatus_bairdii.jpg Peromyscus_maniculatus_bairdii.jpg]
|-
|-
! 58
! 58
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| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ursMar1 ursMar1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ursMar1 ursMar1(1)]
| ursMar1 TBD
| ursMar1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Ursus_maritimus.jpg Ursus_maritimus.jpg]
|-
|-
! 60
! 60
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| fukDam1 TBD
| fukDam1 TBD
| fukDam1 TBD
| fukDam1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Fukomys_damarensis.jpg Fukomys_damarensis.jpg]
|-
|-
! 63
! 63
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| camDro1 TBD
| camDro1 TBD
| camDro1 TBD
| camDro1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Camelus_dromedarius.jpg Camelus_dromedarius.jpg]
|-
|-
! 65
! 65
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| camBac1 TBD
| camBac1 TBD
| camBac1 TBD
| camBac1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Camelus_bactrianus.jpg Camelus_bactrianus.jpg]
|-
|-
! 66
! 66
Line 544: Line 545:
| equAsi1 TBD
| equAsi1 TBD
| equAsi1 TBD
| equAsi1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Equus_asinus.jpg Equus_asinus.jpg]
|-
|-
! 67
! 67
Line 552: Line 553:
| aciJub1 TBD
| aciJub1 TBD
| aciJub1 TBD
| aciJub1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Acinonyx_jubatus.jpg Acinonyx_jubatus.jpg]
|-
|-
! 68
! 68
Line 584: Line 585:
| manJav1 TBD
| manJav1 TBD
| manJav1 TBD
| manJav1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Manis_javanica.jpg Manis_javanica.jpg]
|-
|-
! 72
! 72
Line 591: Line 592:
| Goat
| Goat
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1(1)]
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1(1)]
| capHir1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1(1)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Capra_hircus.jpg Capra_hircus.jpg]
|-
|-
! 73
! 73
Line 600: Line 601:
| panPar1 TBD
| panPar1 TBD
| panPar1 TBD
| panPar1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Panthera_pardus.jpg Panthera_pardus.jpg]
|-
|-
! 74
! 74
Line 616: Line 617:
| hipArm1 TBD
| hipArm1 TBD
| hipArm1 TBD
| hipArm1 TBD
| n/a
| [http://genome-test.cse.ucsc.edu/images/Hipposideros_armiger.jpg Hipposideros_armiger.jpg]
|-
|-
! 76
! 76

Latest revision as of 00:08, 23 February 2017

see also

table

RefSeq mammal assemblies
count taxId scientific name common name hgwdev latest

assembly(count)

RR latest

assembly(count)

photo file
1 10090 Mus musculus Mouse mm10(5) mm10(5) Mus_musculus.jpg
2 10116 Rattus norvegicus Rat rn6(5) rn6(4) Rattus_norvegicus.jpg
3 9785 Loxodonta africana African bush elephant loxAfr3(3) loxAfr3(3) Loxodonta_africana.jpg
4 9258 Ornithorhynchus anatinus Platypus ornAna2(2) ornAna2(2) Ornithorhynchus_anatinus.jpg
5 9612 Canis lupus familiaris Gray wolf canFam3(3) canFam3(3) Canis_lupus_familiaris.jpg
6 13616 Monodelphis domestica Gray short-tailed opossum monDom5(4) monDom5(4) Monodelphis_domestica.jpg
7 9796 Equus caballus Horse equCab2(2) equCab2(2) Equus_caballus.jpg
8 9823 Sus scrofa Pig susScr3(3) susScr3(2) Sus_scrofa.jpg
9 9913 Bos taurus Cow bosTau8(8) bosTau8(9) Bos_taurus.jpg
10 9986 Oryctolagus cuniculus Rabbit oryCun2(2) oryCun2(2) Oryctolagus_cuniculus.jpg
11 9646 Ailuropoda melanoleuca Giant panda ailMel1(1) ailMel1(1) Ailuropoda_melanoleuca.jpg
12 59463 Myotis lucifugus Little brown bat myoLuc2(2) myoLuc2(2) Myotis_lucifugus.jpg
13 10141 Cavia porcellus Guinea pig cavPor3(2) cavPor3(2) Cavia_porcellus.jpg
14 132908 Pteropus vampyrus Large flying fox pteVam1(1) pteVam1(1) Pteropus_vampyrus.jpg
15 10020 Dipodomys ordii Ord's kangaroo rat dipOrd1(1) dipOrd1(1) Dipodomys_ordii.jpg
16 30538 Vicugna pacos Alpaca vicPac2(2) vicPac2(2) Vicugna_pacos.png
17 42254 Sorex araneus European shrew sorAra2(2) sorAra2(2) Sorex_araneus.jpg
18 9685 Felis catus Cat felCat8(4) felCat8(4) Felis_catus.jpg
19 9305 Sarcophilus harrisii Tasmanian devil sarHar1(1) sarHar1(1) Sarcophilus_harrisii.jpg
20 9361 Dasypus novemcinctus Nine-banded armadillo dasNov3(3) dasNov3(3) Dasypus_novemcinctus.jpg
21 9668 Mustela putorius furo European polecat musPut1 TBD musPut1 TBD Mustela_putorius_furo.png
22 10029 Cricetulus griseus Chinese hamster criGri1(1) criGri1(1) Cricetulus_griseus.jpg
23 43179 Ictidomys tridecemlineatus Thirteen-lined ground squirrel ictTri1 TBD ictTri1 TBD Ictidomys_tridecemlineatus.jpg
24 9778 Trichechus manatus latirostris West Indian manatee triMan1(1) triMan1(1) Trichechus_manatus_latirostris.jpg
25 10181 Heterocephalus glaber Naked mole-rat hetGla2(2) hetGla2(2) Heterocephalus_glaber.jpg
26 9915 Bos indicus Zebu bosInd1 TBD bosInd1 TBD Bos_indicus.jpg
27 10160 Octodon degus Degu octDeg1(1) octDeg1(1) Octodon_degus.jpg
28 143302 Condylura cristata Star-nosed mole conCri1(1) conCri1(1) Condylura_cristata.jpg
29 34839 Chinchilla lanigera Long tailed chinchilla chiLan1(1) chiLan1(1) Chinchilla_lanigera.jpg
30 51337 Jaculus jaculus Lesser Egyptian jerboa jacJac1(1) jacJac1(1) Jaculus_jaculus.jpg
31 9807 Ceratotherium simum simum White rhinoceros cerSim1(1) cerSim1(1) Ceratotherium_simum.jpg
32 9978 Ochotona princeps American pika ochPri3(2) ochPri3(2) Ochotona_princeps.jpg
33 185453 Chrysochloris asiatica Cape golden mole chrAsi1(1) chrAsi1(1) Chrysochloris_asiatica.jpg
34 9365 Erinaceus europaeus Common hedgehog eriEur2(2) eriEur2(2) Erinaceus_europaeus.jpg
35 9818 Orycteropus afer afer Aardvark oryAfe1(1) oryAfe1(1) Orycteropus_afer_afer.jpg
36 72004 Bos mutus Wild yak bosMut1(1) bosMut1 TBD Bos_mutus.jpg
37 9940 Ovis aries Sheep oviAri3(2) oviAri3(2) Ovis_aries.jpg
38 28737 Elephantulus edwardii Cape elephant shrew eleEdw1(1) eleEdw1 TBD n/a
39 29078 Eptesicus fuscus Big brown bat eptFus1(1) eptFus1(1) Eptesicus_fuscus.jpg
40 419612 Camelus ferus Wild Bactrian camel camFer1(1) camFer1(1) Camelus_ferus.jpg
41 9371 Echinops telfairi Lesser hedgehog tenrec echTel2(2) echTel2(2) Echinops_telfairi.jpg
42 79684 Microtus ochrogaster Prairie vole micOch1(1) micOch1(1) Microtus_ochrogaster.jpg
43 9707 Odobenus rosmarus divergens Walrus odoRosDiv1(1) odoRosDiv1(1) Odobenus_rosmarus_divergens.jpg
44 9402 Pteropus alecto Black flying fox pteAle1(1) pteAle1 TBD n/a
45 225400 Myotis davidii David's myotis bat myoDav1(1) myoDav1 TBD n/a
46 9733 Orcinus orca Orca orcOrc1(1) orcOrc1(1) Orcinus_orca.jpg
47 246437 Tupaia chinensis Chinese tree shrew tupChi1(1) tupChi1 TBD n/a
48 10036 Mesocricetus auratus Golden hamster mesAur1(1) mesAur1(1) Mesocricetus_auratus.jpg
49 9713 Leptonychotes weddellii Weddell seal lepWed1(1) lepWed1(1) Leptonychotes_weddellii.jpg
50 59538 Pantholops hodgsonii Chiru (Tibetan antelope) panHod1(1) panHod1 TBD n/a
51 109478 Myotis brandtii Brandt's bat myoBra1(1) myoBra1 TBD n/a
52 118797 Lipotes vexillifer Baiji (Yangtze river dolphin) lipVex1(1) lipVex1 TBD Lipotes_vexillifer.jpg
53 9694 Panthera tigris altaica Tiger panTig1(1) panTig1 TBD Panthera_tigris_altaica.jpg
54 89462 Bubalus bubalis Water buffalo bubBub1(1) bubBub1 TBD Bubalus_bubalis.jpg
55 9755 Physeter catodon Sperm whale phyCat1(1) phyCat1 TBD Physeter_catodon.jpg
56 9767 Balaenoptera acutorostrata scammoni Minke whale balAcu1(1) balAcu1(1) Balaenoptera_acutorostrata_scammoni.jpg
57 10042 Peromyscus maniculatus bairdii North American deer mouse perManBai1(1) perManBai1 TBD Peromyscus_maniculatus_bairdii.jpg
58 1026970 Nannospalax galili Galilee mole rat nanGal1(1) nanGal1 TBD n/a
59 29073 Ursus maritimus Polar bear ursMar1(1) ursMar1 TBD Ursus_maritimus.jpg
60 482537 Galeopterus variegatus Sunda flying lemur galVar1(1) galVar1(1) Galeopterus_variegatus.jpg
61 9798 Equus przewalskii Przewalski horse equPrz1(1) equPrz1 TBD Equus_przewalskii.jpg
62 885580 Fukomys damarensis Damara mole-rat fukDam1 TBD fukDam1 TBD Fukomys_damarensis.jpg
63 9901 Bison bison bison Bison bisBis1(1) bisBis1 TBD Bison_bison_bison.jpg
64 9838 Camelus dromedarius Dromedary (Arabian) camel camDro1 TBD camDro1 TBD Camelus_dromedarius.jpg
65 9837 Camelus bactrianus Bactrian (Asia) camel camBac1 TBD camBac1 TBD Camelus_bactrianus.jpg
66 9793 Equus asinus Donkey equAsi1 TBD equAsi1 TBD Equus_asinus.jpg
67 32536 Acinonyx jubatus Cheetah aciJub1 TBD aciJub1 TBD Acinonyx_jubatus.jpg
68 9993 Marmota marmota marmota European marmot marMar1 TBD marMar1 TBD n/a
69 9407 Rousettus aegyptiacus Egyptian rousette rouAeg1(1) rouAeg1 TBD Rousettus_aegyptiacus.jpg
70 291302 Miniopterus natalensis Natal long-fingered bat minNat1 TBD minNat1 TBD n/a
71 9974 Manis javanica Malayan pangolin manJav1 TBD manJav1 TBD Manis_javanica.jpg
72 9925 Capra hircus Goat capHir1(1) capHir1(1) Capra_hircus.jpg
73 9691 Panthera pardus Leopard panPar1 TBD panPar1 TBD Panthera_pardus.jpg
74 89399 Rhinolophus sinicus Chinese horseshoe bat rhiSin1 TBD rhiSin1 TBD n/a
75 186990 Hipposideros armiger Great roundleaf bat hipArm1 TBD hipArm1 TBD Hipposideros_armiger.jpg
76 9739 Tursiops truncatus Bottlenosed dolphin turTru2(2) turTru2(2) Tursiops_truncatus.jpg
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