GapOverlap: Difference between revisions
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The example item is a worst case example, where the ratio of duplicate | The example item is a worst case example, where the ratio of duplicate | ||
sequence size to gap size is the highest, i.e. smallest gap with largest dup size | sequence size to gap size is the highest, i.e. smallest gap with largest dup size | ||
These ends were found by taking 1,000 bases on each side of any run | These ends were found by taking 1,000 bases on each side of any run | ||
of N's in the sequence, thus any gap, and aligned with the blat command: | of N's in the sequence, thus any gap, and aligned with the blat command: | ||
Line 34: | Line 33: | ||
where the alignment ends exactly at the end of the upstream sequence before | where the alignment ends exactly at the end of the upstream sequence before | ||
the gap and begins exactly at the start of the downstream sequence after the gap. | the gap and begins exactly at the start of the downstream sequence after the gap. | ||
== gapOverlap table statistics == | == gapOverlap table statistics == | ||
Line 49: | Line 49: | ||
! item | ! item | ||
total | total | ||
! gap | ! gap | ||
median | median | ||
Line 61: | Line 60: | ||
| 001 | | 001 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CBA_J CBA_J] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624475.1/ GCA_001624475.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624475.1/ GCA_001624475.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
Line 95: | Line 66: | ||
| style='text-align:right'| 279.5 | | style='text-align:right'| 279.5 | ||
| style='text-align:right'| 7933814 | | style='text-align:right'| 7933814 | ||
| style='text-align:right'| 26 | | style='text-align:right'| 26 | ||
| style='text-align:right'| 26736971 | | style='text-align:right'| 26736971 | ||
| 999, 1, [http://genome-test. | | 999, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CBA_J&position=chr16:100093490-100095488 chr16:100093490-100095488] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624475.1_CBA_J_v1 plot GCA_001624475.1_CBA_J_v1] | ||
|- | |- | ||
| | | 002 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=PAHARI_EIJ PAHARI_EIJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_900095145.1/ GCA_900095145.1] | ||
| tbd | | tbd | ||
| style='text-align:right'| | | style='text-align:right'| 6365 | ||
| style='text-align:right'| | | style='text-align:right'| 69 | ||
| style='text-align:right'| | | style='text-align:right'| 479534 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| | | style='text-align:right'| 675789 | ||
| | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=PAHARI_EIJ&position=chr7:107557946-107559946 chr7:107557946-107559946] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_900095145.1_PAHARI_EIJ_v1 plot GCA_900095145.1_PAHARI_EIJ_v1] | ||
|- | |- | ||
| | | 003 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=PWK_PhJ PWK_PhJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624775.1/ GCA_001624775.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 246352 | ||
| style='text-align:right'| | | style='text-align:right'| 65 | ||
| style='text-align:right'| | | style='text-align:right'| 16823451 | ||
| style='text-align:right'| 25 | | style='text-align:right'| 25 | ||
| style='text-align:right'| | | style='text-align:right'| 10585326 | ||
| | | 1000, 11, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=PWK_PhJ&position=chrX:47500642-47502652 chrX:47500642-47502652] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624775.1_PWK_PhJ_v1 plot GCA_001624775.1_PWK_PhJ_v1] | ||
|- | |||
| 004 | |||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=SPRET_EiJ SPRET_EiJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624865.1/ GCA_001624865.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail genomics v. August-2015; Ragout v. 2.0b | |||
| style='text-align:right'| 17567 | |||
| style='text-align:right'| 516 | |||
| style='text-align:right'| 8157541 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 12022683 | |||
| 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=SPRET_EiJ&position=chr10:66049175-66051175 chr10:66049175-66051175] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624865.1_SPRET_EiJ_v1 plot GCA_001624865.1_SPRET_EiJ_v1] | |||
|- | |- | ||
| | | 005 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=NZO_HlLtJ NZO_HlLtJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624745.1/ GCA_001624745.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 21209 | ||
| style='text-align:right'| | | style='text-align:right'| 448 | ||
| style='text-align:right'| | | style='text-align:right'| 8647582 | ||
| style='text-align:right'| 25 | | style='text-align:right'| 25 | ||
| style='text-align:right'| | | style='text-align:right'| 14665906 | ||
| | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=NZO_HlLtJ&position=chr10:29328015-29330015 chr10:29328015-29330015] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624745.1_NZO_HlLtJ_v1 plot GCA_001624745.1_NZO_HlLtJ_v1] | ||
|- | |- | ||
| | | 006 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=129S1_SvImJ 129S1_SvImJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624185.1/ GCA_001624185.1] | ||
| | | SGA v. 0.9.19; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 20479 | ||
| style='text-align:right'| | | style='text-align:right'| 400 | ||
| style='text-align:right'| | | style='text-align:right'| 7813478 | ||
| style='text-align:right'| 25 | |||
| style='text-align:right'| | | style='text-align:right'| 15456883 | ||
| style='text-align:right'| | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=129S1_SvImJ&position=chr15:34994444-34996444 chr15:34994444-34996444] | ||
| 1000, 1, [http://genome-test. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624185.1_129S1_SvImJ_v1 plot GCA_001624185.1_129S1_SvImJ_v1] | ||
| [http://hgwdev-hiram. | |||
|- | |- | ||
| | | 007 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=C57BL_6NJ C57BL_6NJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001632555.1/ GCA_001632555.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 24698 | ||
| style='text-align:right'| | | style='text-align:right'| 97 | ||
| style='text-align:right'| | | style='text-align:right'| 6239791 | ||
| & | | style='text-align:right'| 25 | ||
| style='text-align:right'| 14404336 | |||
| 992, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=C57BL_6NJ&position=chr10:109927459-109929443 chr10:109927459-109929443] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001632555.1_C57BL_6NJ_v1 plot GCA_001632555.1_C57BL_6NJ_v1] | |||
|- | |||
| 008 | |||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=AKR_J AKR_J] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624295.1/ GCA_001624295.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | |||
| style='text-align:right'| 18106 | |||
| style='text-align:right'| 335 | |||
| style='text-align:right'| 6717178 | |||
| style='text-align:right'| 25 | | style='text-align:right'| 25 | ||
| style='text-align:right'| | | style='text-align:right'| 14468858 | ||
| 1000, | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=AKR_J&position=chr16:53464467-53466467 chr16:53464467-53466467] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624295.1_AKR_J_v1 plot GCA_001624295.1_AKR_J_v1] | ||
|- | |- | ||
| 009 | | 009 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=C3H_HeJ C3H_HeJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001632575.1/ GCA_001632575.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 19436 | ||
| style='text-align:right'| | | style='text-align:right'| 307 | ||
| style='text-align:right'| | | style='text-align:right'| 6287513 | ||
| style='text-align:right'| 26 | |||
| style='text-align:right'| | | style='text-align:right'| 12931709 | ||
| style='text-align:right'| | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=C3H_HeJ&position=chr1:52782023-52784023 chr1:52782023-52784023] | ||
| | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001632575.1_C3H_HeJ_v1 plot GCA_001632575.1_C3H_HeJ_v1] | ||
| [http://hgwdev-hiram. | |||
|- | |- | ||
| 010 | | 010 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=FVB_NJ FVB_NJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624535.1/ GCA_001624535.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 14811 | ||
| style='text-align:right'| | | style='text-align:right'| 355 | ||
| style='text-align:right'| | | style='text-align:right'| 4902432 | ||
| style='text-align:right'| 11 | |||
| style='text-align:right'| | | style='text-align:right'| 8504942 | ||
| style='text-align:right'| | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=FVB_NJ&position=chr17:22790916-22792916 chr17:22790916-22792916] | ||
| 1000, 1, [http://genome-test. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624535.1_FVB_NJ_v1 plot GCA_001624535.1_FVB_NJ_v1] | ||
| [http://hgwdev-hiram. | |||
|- | |- | ||
| 011 | | 011 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=WSB_EiJ WSB_EiJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624835.1/ GCA_001624835.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240 | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 11455 | ||
| style='text-align:right'| | | style='text-align:right'| 236 | ||
| style='text-align:right'| | | style='text-align:right'| 3524308 | ||
| style='text-align:right'| 25 | |||
| style='text-align:right'| | | style='text-align:right'| 10785288 | ||
| style='text-align:right'| | | 994, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=WSB_EiJ&position=chrX:58921651-58923639 chrX:58921651-58923639] | ||
| | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624835.1_WSB_EiJ_v1 plot GCA_001624835.1_WSB_EiJ_v1] | ||
| [http://hgwdev-hiram. | |||
|- | |- | ||
| 012 | | 012 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=A_J A_J] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624215.1/ GCA_001624215.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 38843 | ||
| style='text-align:right'| | | style='text-align:right'| 80 | ||
| style='text-align:right'| | | style='text-align:right'| 6428892 | ||
| style='text-align:right'| 25 | | style='text-align:right'| 25 | ||
| style='text-align:right'| | | style='text-align:right'| 14025482 | ||
| 1000, 1, [http://genome-test. | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=A_J&position=chr17:63064911-63066911 chr17:63064911-63066911] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624215.1_A_J_v1 plot GCA_001624215.1_A_J_v1] | ||
|- | |- | ||
| 013 | | 013 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CAROLI_EIJ CAROLI_EIJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_900094665.1/ GCA_900094665.1] | ||
| | | tbd | ||
| style='text-align:right'| | | style='text-align:right'| 6469 | ||
| style='text-align:right'| | | style='text-align:right'| 70 | ||
| style='text-align:right'| | | style='text-align:right'| 484857 | ||
| style='text-align:right'| 1 | |||
| style='text-align:right'| | | style='text-align:right'| 599072 | ||
| style='text-align:right'| | | 945, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CAROLI_EIJ&position=chr1:145228793-145230683 chr1:145228793-145230683] | ||
| | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_900094665.1_CAROLI_EIJ_v1 plot GCA_900094665.1_CAROLI_EIJ_v1] | ||
| [http://hgwdev-hiram. | |||
|- | |- | ||
| 014 | | 014 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=LP_J LP_J] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001632615.1/ GCA_001632615.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 18175 | ||
| style='text-align:right'| | | style='text-align:right'| 98 | ||
| style='text-align:right'| | | style='text-align:right'| 5185817 | ||
| style='text-align:right'| 25 | | style='text-align:right'| 25 | ||
| style='text-align:right'| | | style='text-align:right'| 13674278 | ||
| | | 997, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=LP_J&position=chr12:42758762-42760756 chr12:42758762-42760756] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001632615.1_LP_J_v1 plot GCA_001632615.1_LP_J_v1] | ||
|- | |- | ||
| 015 | | 015 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=BALB_cJ BALB_cJ] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/ | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001632525.1/ GCA_001632525.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | ||
| style='text-align:right'| | | style='text-align:right'| 15793 | ||
| style='text-align:right'| | | style='text-align:right'| 363 | ||
| style='text-align:right'| | | style='text-align:right'| 5543975 | ||
| style='text-align:right'| 25 | | style='text-align:right'| 25 | ||
| style='text-align:right'| | | style='text-align:right'| 10053337 | ||
| | | 999, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=BALB_cJ&position=chr4:59636957-59638955 chr4:59636957-59638955] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001632525.1_BALB_cJ_v1 plot GCA_001632525.1_BALB_cJ_v1] | ||
|- | |- | ||
| 016 | | 016 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=DBA_2J DBA_2J] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624505.1/ GCA_001624505.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | |||
| style='text-align:right'| 13245 | |||
| style='text-align:right'| 98 | |||
| style='text-align:right'| 3606947 | |||
| style='text-align:right'| 25 | |||
| style='text-align:right'| 7251641 | |||
| 999, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=DBA_2J&position=chr10:47277903-47279901 chr10:47277903-47279901] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624505.1_DBA_2J_v1 plot GCA_001624505.1_DBA_2J_v1] | |||
|- | |||
| 017 | |||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=NOD_ShiLtJ NOD_ShiLtJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624675.1/ GCA_001624675.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | |||
| style='text-align:right'| 36838 | |||
| style='text-align:right'| 172 | |||
| style='text-align:right'| 10515906 | |||
| style='text-align:right'| 26 | |||
| style='text-align:right'| 25076950 | |||
| 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=NOD_ShiLtJ&position=chr15:69777938-69779938 chr15:69777938-69779938] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624675.1_NOD_ShiLtJ_v1 plot GCA_001624675.1_NOD_ShiLtJ_v1] | |||
|- | |||
| 018 | |||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CAST_EiJ CAST_EiJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624445.1/ GCA_001624445.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624445.1/ GCA_001624445.1] | ||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail Genomics v. August-2015; Ragout v. 2.0b | | SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail Genomics v. August-2015; Ragout v. 2.0b | ||
Line 277: | Line 287: | ||
| style='text-align:right'| 324 | | style='text-align:right'| 324 | ||
| style='text-align:right'| 5063290 | | style='text-align:right'| 5063290 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 10013826 | | style='text-align:right'| 10013826 | ||
| 1000, 1, [http://genome-test. | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.gi.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CAST_EiJ&position=chr12:100100159-100102159 chr12:100100159-100102159] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GCA_001624445.1_CAST_EiJ_v1 plot GCA_001624445.1_CAST_EiJ_v1] | ||
|- | |- | ||
| 019 | |||
| 2013 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=CHM1 CHM1] | |||
| 019 | |||
| 2013 | |||
| style='text-align:center;'| [http://genome-test. | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000306695.2/ GCF_000306695.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000306695.2/ GCF_000306695.2] | ||
| SRPRISM v. 2.4.28-alpha; ARGO v. 0.1 | | SRPRISM v. 2.4.28-alpha; ARGO v. 0.1 | ||
Line 319: | Line 300: | ||
| style='text-align:right'| 86 | | style='text-align:right'| 86 | ||
| style='text-align:right'| 10897 | | style='text-align:right'| 10897 | ||
| style='text-align:right'| 88 | | style='text-align:right'| 88 | ||
| style='text-align:right'| 65164 | | style='text-align:right'| 65164 | ||
| 319, 10, [http://genome-test. | | 319, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=CHM1&position=chr6:108876987-108877634 chr6:108876987-108877634] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=CHM1 plot CHM1] | ||
|- | |- | ||
| 020 | | 020 | ||
| 2018 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=GRCm38B GRCm38B] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 3 | |||
| style='text-align:right'| 304 | |||
| style='text-align:right'| 860 | |||
| style='text-align:right'| 6000 | |||
| style='text-align:right'| 57759 | |||
| 477, 1759, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=GRCm38B&position=chrX_GPS_017319198v1_random:240297-243009 chrX_GPS_017319198v1_random:240297-243009] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=GRCm38B plot GRCm38B] | |||
|- | |||
| 021 | |||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=acaChl1 acaChl1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000695815.1/ GCF_000695815.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000695815.1/ GCF_000695815.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 333: | Line 326: | ||
| style='text-align:right'| 170 | | style='text-align:right'| 170 | ||
| style='text-align:right'| 1250 | | style='text-align:right'| 1250 | ||
| style='text-align:right'| 188 | | style='text-align:right'| 188 | ||
| style='text-align:right'| 2340 | | style='text-align:right'| 2340 | ||
| 722, 188, [http://genome-test. | | 722, 188, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=acaChl1&position=KK833582:5976-7607 KK833582:5976-7607] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=acaChl1 plot acaChl1] | ||
|- | |- | ||
| | | 024 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004335.2/ GCF_000004335.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004335.2/ GCF_000004335.2] | ||
| tbd | | tbd | ||
Line 347: | Line 339: | ||
| style='text-align:right'| 104 | | style='text-align:right'| 104 | ||
| style='text-align:right'| 10594 | | style='text-align:right'| 10594 | ||
| style='text-align:right'| 1193 | | style='text-align:right'| 1193 | ||
| style='text-align:right'| 82504 | | style='text-align:right'| 82504 | ||
| 75, 1, [http://genome-test. | | 75, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ailMel1&position=GL192694.1:348745-348895 GL192694.1:348745-348895] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ailMel1 plot ailMel1] | ||
|- | |- | ||
| | | 025 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000281125.1/ GCF_000281125.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000281125.1/ GCF_000281125.1] | ||
| Allpaths v. R41313; manual scaffolding | | Allpaths v. R41313; manual scaffolding | ||
Line 361: | Line 352: | ||
| style='text-align:right'| 83 | | style='text-align:right'| 83 | ||
| style='text-align:right'| 273934 | | style='text-align:right'| 273934 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 74939 | | style='text-align:right'| 74939 | ||
| 999, 1, [http://genome-test. | | 999, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=allMis1&position=JH739280:136433-138431 JH739280:136433-138431] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=allMis1 plot allMis1] | ||
|- | |- | ||
| | | 026 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=allSin1 allSin1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000455745.1/ GCF_000455745.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000455745.1/ GCF_000455745.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 375: | Line 365: | ||
| style='text-align:right'| 125 | | style='text-align:right'| 125 | ||
| style='text-align:right'| 26114 | | style='text-align:right'| 26114 | ||
| style='text-align:right'| 2265 | | style='text-align:right'| 2265 | ||
| style='text-align:right'| 261774 | | style='text-align:right'| 261774 | ||
| 69, 10, [http://genome-test. | | 69, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=allSin1&position=KE696011:2095494-2095641 KE696011:2095494-2095641] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=allSin1 plot allSin1] | ||
|- | |- | ||
| | | 027 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=amaVit1 amaVit1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ GCA_000332375.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ GCA_000332375.1] | ||
| Ray software v. 3 | | Ray software v. 3 | ||
Line 389: | Line 378: | ||
| style='text-align:right'| 81 | | style='text-align:right'| 81 | ||
| style='text-align:right'| 1392334 | | style='text-align:right'| 1392334 | ||
| style='text-align:right'| 172 | | style='text-align:right'| 172 | ||
| style='text-align:right'| 2756641 | | style='text-align:right'| 2756641 | ||
| 492, 13, [http://genome-test. | | 492, 13, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=amaVit1&position=KB238901:2710-3706 KB238901:2710-3706] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=amaVit1 plot amaVit1] | ||
|- | |- | ||
| | | 028 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anaPla1 anaPla1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000355885.1/ GCF_000355885.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000355885.1/ GCF_000355885.1] | ||
| SOAPdenovo Release v. 1.03 | | SOAPdenovo Release v. 1.03 | ||
Line 403: | Line 391: | ||
| style='text-align:right'| 251 | | style='text-align:right'| 251 | ||
| style='text-align:right'| 10663 | | style='text-align:right'| 10663 | ||
| style='text-align:right'| 1660 | | style='text-align:right'| 1660 | ||
| style='text-align:right'| 94318 | | style='text-align:right'| 94318 | ||
| 99, 1, [http://genome-test. | | 99, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anaPla1&position=KB742632:907264-907462 KB742632:907264-907462] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=anaPla1 plot anaPla1] | ||
|- | |- | ||
| | | 029 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ancCey1 ancCey1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000688135.1/ GCA_000688135.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000688135.1/ GCA_000688135.1] | ||
| Velvet v. 1.2.05; BGI GapCloser v. 1.12 (release_2011); HaploMerger v. 20111230; ERANGE v. 3.2 | | Velvet v. 1.2.05; BGI GapCloser v. 1.12 (release_2011); HaploMerger v. 20111230; ERANGE v. 3.2 | ||
Line 417: | Line 404: | ||
| style='text-align:right'| 154 | | style='text-align:right'| 154 | ||
| style='text-align:right'| 171926 | | style='text-align:right'| 171926 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 85569 | | style='text-align:right'| 85569 | ||
| 981, 1, [http://genome-test. | | 981, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ancCey1&position=JARK01000206v1:43215-45177 JARK01000206v1:43215-45177] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ancCey1 plot ancCey1] | ||
|- | |- | ||
| | | 030 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=angJap1 angJap1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000470695.1/ GCA_000470695.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000470695.1/ GCA_000470695.1] | ||
| CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta | | CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta | ||
Line 431: | Line 417: | ||
| style='text-align:right'| 91 | | style='text-align:right'| 91 | ||
| style='text-align:right'| 477038 | | style='text-align:right'| 477038 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 610535 | | style='text-align:right'| 610535 | ||
| 588, 1, [http://genome-test. | | 588, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=angJap1&position=KI304555:142639-143815 KI304555:142639-143815] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=angJap1 plot angJap1] | ||
|- | |- | ||
| | | 031 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anoCar1 anoCar1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 445: | Line 430: | ||
| style='text-align:right'| 383.5 | | style='text-align:right'| 383.5 | ||
| style='text-align:right'| 8167 | | style='text-align:right'| 8167 | ||
| style='text-align:right'| 537.5 | | style='text-align:right'| 537.5 | ||
| style='text-align:right'| 23338 | | style='text-align:right'| 23338 | ||
| 965, 100, [http://genome-test. | | 965, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anoCar1&position=scaffold_84:3853690-3855719 scaffold_84:3853690-3855719] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=anoCar1 plot anoCar1] | ||
|- | |- | ||
| | | 032 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000090745.1/ GCF_000090745.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000090745.1/ GCF_000090745.1] | ||
| Arachne v. 3.0.0 | | Arachne v. 3.0.0 | ||
Line 459: | Line 443: | ||
| style='text-align:right'| 240 | | style='text-align:right'| 240 | ||
| style='text-align:right'| 6694 | | style='text-align:right'| 6694 | ||
| style='text-align:right'| 258 | | style='text-align:right'| 258 | ||
| style='text-align:right'| 26105 | | style='text-align:right'| 26105 | ||
| 318, 100, [http://genome-test. | | 318, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anoCar2&position=chr4:54548520-54549255 chr4:54548520-54549255] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=anoCar2 plot anoCar2] | ||
|- | |- | ||
| | | 033 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anoGam1 anoGam1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 473: | Line 456: | ||
| style='text-align:right'| 528 | | style='text-align:right'| 528 | ||
| style='text-align:right'| 3139 | | style='text-align:right'| 3139 | ||
| style='text-align:right'| 1000 | | style='text-align:right'| 1000 | ||
| style='text-align:right'| 21041 | | style='text-align:right'| 21041 | ||
| 1000, 384, [http://genome-test. | | 1000, 384, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anoGam1&position=chr2L:5019927-5022310 chr2L:5019927-5022310] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=anoGam1 plot anoGam1] | ||
|- | |- | ||
| | | 034 | ||
| 2013 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anoGam3 anoGam3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ GCA_000385615.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005575.2/ GCF_000005575.2] | ||
| tbd | |||
| style='text-align:right'| 6 | |||
| style='text-align:right'| 415 | |||
| style='text-align:right'| 2611 | |||
| style='text-align:right'| 1884.5 | |||
| style='text-align:right'| 20042 | |||
| 1000, 384, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=anoGam3&position=chr2L:5538027-5540410 chr2L:5538027-5540410] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=anoGam3 plot anoGam3] | |||
|- | |||
| 035 | |||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aotNan1 aotNan1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000952055.2/ GCF_000952055.2] | |||
| PBJelly2 v. 14.9.9; AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 | |||
| style='text-align:right'| 2334 | |||
| style='text-align:right'| 182.5 | |||
| style='text-align:right'| 863402 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 2688526 | |||
| 990, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aotNan1&position=NW_018504266v1:1888714-1890703 NW_018504266v1:1888714-1890703] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=aotNan1 plot aotNan1] | |||
|- | |||
| 036 | |||
| 2013 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apaSpi1 apaSpi1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ GCA_000385615.1] | |||
| SOAPdenovo v. 1.0.5 | | SOAPdenovo v. 1.0.5 | ||
| style='text-align:right'| 607 | | style='text-align:right'| 607 | ||
| style='text-align:right'| 61 | | style='text-align:right'| 61 | ||
| style='text-align:right'| 34340 | | style='text-align:right'| 34340 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 56961 | | style='text-align:right'| 56961 | ||
| 86, 10, [http://genome-test. | | 86, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apaSpi1&position=KB929338:2579176-2579357 KB929338:2579176-2579357] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=apaSpi1 plot apaSpi1] | ||
|- | |- | ||
| | | 038 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apiMel1 apiMel1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 501: | Line 508: | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 12150 | | style='text-align:right'| 12150 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 24454 | | style='text-align:right'| 24454 | ||
| 64, 1, [http://genome-test. | | 64, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apiMel1&position=Group14.17:517485-517613 Group14.17:517485-517613] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=apiMel1 plot apiMel1] | ||
|- | |- | ||
| | | 039 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apiMel2 apiMel2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 515: | Line 521: | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 7371 | | style='text-align:right'| 7371 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 19757 | | style='text-align:right'| 19757 | ||
| 168, 50, [http://genome-test. | | 168, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apiMel2&position=Group4:4855105-4855490 Group4:4855105-4855490] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=apiMel2 plot apiMel2] | ||
|- | |- | ||
| | | 040 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apiMel3 apiMel3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 529: | Line 534: | ||
| style='text-align:right'| 62 | | style='text-align:right'| 62 | ||
| style='text-align:right'| 16045 | | style='text-align:right'| 16045 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 27354 | | style='text-align:right'| 27354 | ||
| 198, 50, [http://genome-test. | | 198, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apiMel3&position=Group15:1672512-1672957 Group15:1672512-1672957] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=apiMel3 plot apiMel3] | ||
|- | |- | ||
| | | 041 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apiMel4 apiMel4] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002195.4/ GCF_000002195.4] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002195.4/ GCF_000002195.4] | ||
| Atlas assembly system v. before 2011 | | Atlas assembly system v. before 2011 | ||
Line 543: | Line 547: | ||
| style='text-align:right'| 52.5 | | style='text-align:right'| 52.5 | ||
| style='text-align:right'| 13378 | | style='text-align:right'| 13378 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 24561 | | style='text-align:right'| 24561 | ||
| 167, 50, [http://genome-test. | | 167, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apiMel4&position=Group14:1674117-1674500 Group14:1674117-1674500] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=apiMel4 plot apiMel4] | ||
|- | |- | ||
| | | 042 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aplCal1 aplCal1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 557: | Line 560: | ||
| style='text-align:right'| 77 | | style='text-align:right'| 77 | ||
| style='text-align:right'| 3383 | | style='text-align:right'| 3383 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 16863 | | style='text-align:right'| 16863 | ||
| 390, 100, [http://genome-test. | | 390, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aplCal1&position=scaffold_1802:24095-24974 scaffold_1802:24095-24974] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=aplCal1 plot aplCal1] | ||
|- | |- | ||
| | | 043 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aptFor1 aptFor1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699145.1/ GCF_000699145.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699145.1/ GCF_000699145.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 571: | Line 573: | ||
| style='text-align:right'| 147 | | style='text-align:right'| 147 | ||
| style='text-align:right'| 26798 | | style='text-align:right'| 26798 | ||
| style='text-align:right'| 1575 | | style='text-align:right'| 1575 | ||
| style='text-align:right'| 323838 | | style='text-align:right'| 323838 | ||
| 779, 98, [http://genome-test. | | 779, 98, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aptFor1&position=KL225582:135043-136698 KL225582:135043-136698] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=aptFor1 plot aptFor1] | ||
|- | |- | ||
| | | 044 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aptMan1 aptMan1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001039765.1/ GCF_001039765.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001039765.1/ GCF_001039765.1] | ||
| tbd | | tbd | ||
Line 585: | Line 586: | ||
| style='text-align:right'| 124 | | style='text-align:right'| 124 | ||
| style='text-align:right'| 4653010 | | style='text-align:right'| 4653010 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 3331011 | | style='text-align:right'| 3331011 | ||
| 1000, 1, [http://genome-test. | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aptMan1&position=NW_013987125v1:2508272-2510272 NW_013987125v1:2508272-2510272] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=aptMan1 plot aptMan1] | ||
|- | |- | ||
| | | 045 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aquChr1 aquChr1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000696035.1/ GCA_000696035.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000696035.1/ GCA_000696035.1] | ||
| ABySS v. 1.3.6 | | ABySS v. 1.3.6 | ||
Line 599: | Line 599: | ||
| style='text-align:right'| 43 | | style='text-align:right'| 43 | ||
| style='text-align:right'| 201248 | | style='text-align:right'| 201248 | ||
| style='text-align:right'| 65 | | style='text-align:right'| 65 | ||
| style='text-align:right'| 16118238 | | style='text-align:right'| 16118238 | ||
| 65, 1, [http://genome-test. | | 65, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aquChr1&position=KK850461:8872-9002 KK850461:8872-9002] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=aquChr1 plot aquChr1] | ||
|- | |- | ||
| | | 046 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aquChr2 aquChr2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000766835.1/ GCA_000766835.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000766835.1/ GCA_000766835.1] | ||
| AllPaths-LG v. August 2013 | | AllPaths-LG v. August 2013 | ||
Line 613: | Line 612: | ||
| style='text-align:right'| 82.5 | | style='text-align:right'| 82.5 | ||
| style='text-align:right'| 31349 | | style='text-align:right'| 31349 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 143600 | | style='text-align:right'| 143600 | ||
| 1000, 1, [http://genome-test. | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aquChr2&position=KN265664v1:16826772-16828772 KN265664v1:16826772-16828772] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=aquChr2 plot aquChr2] | ||
|- | |- | ||
| | | 047 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=araMac1 araMac1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ GCA_000400695.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ GCA_000400695.1] | ||
| CLC Genomics Workbench v. 4.9 | | CLC Genomics Workbench v. 4.9 | ||
Line 627: | Line 625: | ||
| style='text-align:right'| 48.5 | | style='text-align:right'| 48.5 | ||
| style='text-align:right'| 7929 | | style='text-align:right'| 7929 | ||
| style='text-align:right'| 33 | | style='text-align:right'| 33 | ||
| style='text-align:right'| 27135 | | style='text-align:right'| 27135 | ||
| 241, 2, [http://genome-test. | | 241, 2, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=araMac1&position=KE047968:4314-4797 KE047968:4314-4797] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=araMac1 plot araMac1] | ||
|- | |- | ||
| | | 048 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| araTha1 | | style='text-align:center;'| araTha1 | ||
Line 641: | Line 638: | ||
| style='text-align:right'| 289 | | style='text-align:right'| 289 | ||
| style='text-align:right'| 289 | | style='text-align:right'| 289 | ||
| style='text-align:right'| 60 | | style='text-align:right'| 60 | ||
| style='text-align:right'| 60 | | style='text-align:right'| 60 | ||
| 289, 60, [http://genome-test. | | 289, 60, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=araTha1&position=chr3:13855281-13855918 chr3:13855281-13855918] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=araTha1 plot araTha1] | ||
|- | |- | ||
| | | 049 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ascSuu1 ascSuu1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000298755.1/ GCA_000298755.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000298755.1/ GCA_000298755.1] | ||
| SOAPdenovo v. 1.04 | | SOAPdenovo v. 1.04 | ||
Line 655: | Line 651: | ||
| style='text-align:right'| 404 | | style='text-align:right'| 404 | ||
| style='text-align:right'| 3688 | | style='text-align:right'| 3688 | ||
| style='text-align:right'| 555 | | style='text-align:right'| 555 | ||
| style='text-align:right'| 6481 | | style='text-align:right'| 6481 | ||
| 1000, 247, [http://genome-test. | | 1000, 247, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ascSuu1&position=JH879107v1:69728-71974 JH879107v1:69728-71974] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ascSuu1 plot ascSuu1] | ||
|- | |- | ||
| | | 051 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=astMex1 astMex1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000372685.1/ GCF_000372685.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000372685.1/ GCF_000372685.1] | ||
| AllPathsLG v. Jan-2013 | | AllPathsLG v. Jan-2013 | ||
Line 669: | Line 664: | ||
| style='text-align:right'| 78 | | style='text-align:right'| 78 | ||
| style='text-align:right'| 137888 | | style='text-align:right'| 137888 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 1964877 | | style='text-align:right'| 1964877 | ||
| 647, 1, [http://genome-test. | | 647, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=astMex1&position=KB872443:19678-20972 KB872443:19678-20972] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=astMex1 plot astMex1] | ||
|- | |- | ||
| | | 052 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=balAcu1 balAcu1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000493695.1/ GCF_000493695.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000493695.1/ GCF_000493695.1] | ||
| SOAPdenovo v. 16-Mar-2012 | | SOAPdenovo v. 16-Mar-2012 | ||
Line 683: | Line 677: | ||
| style='text-align:right'| 149 | | style='text-align:right'| 149 | ||
| style='text-align:right'| 57860 | | style='text-align:right'| 57860 | ||
| style='text-align:right'| 821 | | style='text-align:right'| 821 | ||
| style='text-align:right'| 371511 | | style='text-align:right'| 371511 | ||
| 926, 15, [http://genome-test. | | 926, 15, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=balAcu1&position=KI537556:2252563-2254429 KI537556:2252563-2254429] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=balAcu1 plot balAcu1] | ||
|- | |- | ||
| | | 053 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=balPav1 balPav1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000709895.1/ GCA_000709895.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000709895.1/ GCA_000709895.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 697: | Line 690: | ||
| style='text-align:right'| 270 | | style='text-align:right'| 270 | ||
| style='text-align:right'| 1303 | | style='text-align:right'| 1303 | ||
| style='text-align:right'| 216 | | style='text-align:right'| 216 | ||
| style='text-align:right'| 1098 | | style='text-align:right'| 1098 | ||
| 391, 46, [http://genome-test. | | 391, 46, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=balPav1&position=KL482982:8685-9512 KL482982:8685-9512] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=balPav1 plot balPav1] | ||
|- | |- | ||
| | | 054 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bisBis1 bisBis1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000754665.1/ GCA_000754665.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000754665.1/ GCA_000754665.1] | ||
| MaSuRCA v. 2.1.0 | | MaSuRCA v. 2.1.0 | ||
Line 711: | Line 703: | ||
| style='text-align:right'| 72 | | style='text-align:right'| 72 | ||
| style='text-align:right'| 712109 | | style='text-align:right'| 712109 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 947641 | | style='text-align:right'| 947641 | ||
| 933, 100, [http://genome-test. | | 933, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bisBis1&position=KN265089v1:519297-521262 KN265089v1:519297-521262] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bisBis1 plot bisBis1] | ||
|- | |- | ||
| | | 056 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosMut1 bosMut1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000298355.1/ GCA_000298355.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000298355.1/ GCA_000298355.1] | ||
| SOAPdenovo v. 1.14 | | SOAPdenovo v. 1.14 | ||
Line 725: | Line 716: | ||
| style='text-align:right'| 83 | | style='text-align:right'| 83 | ||
| style='text-align:right'| 27917 | | style='text-align:right'| 27917 | ||
| style='text-align:right'| 1274 | | style='text-align:right'| 1274 | ||
| style='text-align:right'| 256420 | | style='text-align:right'| 256420 | ||
| 71, 14, [http://genome-test. | | 71, 14, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosMut1&position=JH880933:479978-480133 JH880933:479978-480133] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosMut1 plot bosMut1] | ||
|- | |- | ||
| | | 057 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau1 bosTau1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 739: | Line 729: | ||
| style='text-align:right'| 40 | | style='text-align:right'| 40 | ||
| style='text-align:right'| 289123 | | style='text-align:right'| 289123 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 609155 | | style='text-align:right'| 609155 | ||
| 200, 50, [http://genome-test. | | 200, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau1&position=SCAFFOLD51732:9156-9605 SCAFFOLD51732:9156-9605] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau1 plot bosTau1] | ||
|- | |- | ||
| | | 058 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau2 bosTau2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 753: | Line 742: | ||
| style='text-align:right'| 105 | | style='text-align:right'| 105 | ||
| style='text-align:right'| 564259 | | style='text-align:right'| 564259 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 2525381 | | style='text-align:right'| 2525381 | ||
| 997, 50, [http://genome-test. | | 997, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau2&position=scaffold4383:34413-36456 scaffold4383:34413-36456] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau2 plot bosTau2] | ||
|- | |- | ||
| | | 059 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau3 bosTau3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 767: | Line 755: | ||
| style='text-align:right'| 51 | | style='text-align:right'| 51 | ||
| style='text-align:right'| 38673 | | style='text-align:right'| 38673 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 270212 | | style='text-align:right'| 270212 | ||
| 1000, 50, [http://genome-test. | | 1000, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau3&position=chr10:68862764-68864813 chr10:68862764-68864813] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau3 plot bosTau3] | ||
|- | |- | ||
| | | 060 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau4 bosTau4] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 781: | Line 768: | ||
| style='text-align:right'| 53 | | style='text-align:right'| 53 | ||
| style='text-align:right'| 52814 | | style='text-align:right'| 52814 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 376407 | | style='text-align:right'| 376407 | ||
| 1000, 50, [http://genome-test. | | 1000, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau4&position=chr10:75537624-75539673 chr10:75537624-75539673] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau4 plot bosTau4] | ||
|- | |- | ||
| | | 061 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau5 bosTau5] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 795: | Line 781: | ||
| style='text-align:right'| 53 | | style='text-align:right'| 53 | ||
| style='text-align:right'| 51742 | | style='text-align:right'| 51742 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 376650 | | style='text-align:right'| 376650 | ||
| 1000, 50, [http://genome-test. | | 1000, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau5&position=chr10:75464684-75466733 chr10:75464684-75466733] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau5 plot bosTau5] | ||
|- | |- | ||
| | | 062 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau6 bosTau6] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000003055.5/ GCF_000003055.5] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000003055.5/ GCF_000003055.5] | ||
| UMD Overlapper v. 2009; additional processing | | UMD Overlapper v. 2009; additional processing | ||
Line 809: | Line 794: | ||
| style='text-align:right'| 670 | | style='text-align:right'| 670 | ||
| style='text-align:right'| 463109 | | style='text-align:right'| 463109 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 87080 | | style='text-align:right'| 87080 | ||
| 923, 1, [http://genome-test. | | 923, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau6&position=chr22:31476636-31478482 chr22:31476636-31478482] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau6 plot bosTau6] | ||
|- | |- | ||
| | | 063 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 823: | Line 807: | ||
| style='text-align:right'| 55 | | style='text-align:right'| 55 | ||
| style='text-align:right'| 39706 | | style='text-align:right'| 39706 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 141131 | | style='text-align:right'| 141131 | ||
| 1000, 50, [http://genome-test. | | 1000, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau7&position=chr10:75201034-75203083 chr10:75201034-75203083] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau7 plot bosTau7] | ||
|- | |- | ||
| | | 064 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau8 bosTau8] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000003055.5/ GCF_000003055.5] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000003055.5/ GCF_000003055.5] | ||
| UMD Overlapper v. 2009; additional processing | | UMD Overlapper v. 2009; additional processing | ||
Line 837: | Line 820: | ||
| style='text-align:right'| 670 | | style='text-align:right'| 670 | ||
| style='text-align:right'| 463109 | | style='text-align:right'| 463109 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 87080 | | style='text-align:right'| 87080 | ||
| 923, 1, [http://genome-test. | | 923, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau8&position=chr22:31476636-31478482 chr22:31476636-31478482] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau8 plot bosTau8] | ||
|- | |- | ||
| | | 065 | ||
| 2018 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau9 bosTau9] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_002263795.1/ GCF_002263795.1] | |||
| Falcon v. FEB-2016 | |||
| style='text-align:right'| 1 | |||
| style='text-align:right'| 75 | |||
| style='text-align:right'| 75 | |||
| style='text-align:right'| 25 | |||
| style='text-align:right'| 25 | |||
| 75, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTau9&position=chr13:11061714-11061888 chr13:11061714-11061888] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTau9 plot bosTau9] | |||
|- | |||
| 066 | |||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTauMd3 bosTauMd3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 851: | Line 846: | ||
| style='text-align:right'| 670 | | style='text-align:right'| 670 | ||
| style='text-align:right'| 463109 | | style='text-align:right'| 463109 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 87080 | | style='text-align:right'| 87080 | ||
| 923, 1, [http://genome-test. | | 923, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bosTauMd3&position=chr22:31476636-31478482 chr22:31476636-31478482] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bosTauMd3 plot bosTauMd3] | ||
|- | |- | ||
| | | 067 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=braFlo1 braFlo1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 865: | Line 859: | ||
| style='text-align:right'| 484 | | style='text-align:right'| 484 | ||
| style='text-align:right'| 14260 | | style='text-align:right'| 14260 | ||
| style='text-align:right'| 417 | | style='text-align:right'| 417 | ||
| style='text-align:right'| 12668 | | style='text-align:right'| 12668 | ||
| 375, 1, [http://genome-test. | | 375, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=braFlo1&position=chrUn:879323570-879324320 chrUn:879323570-879324320] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=braFlo1 plot braFlo1] | ||
|- | |- | ||
| | | 068 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=braFlo2 braFlo2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 879: | Line 872: | ||
| style='text-align:right'| 439 | | style='text-align:right'| 439 | ||
| style='text-align:right'| 8529 | | style='text-align:right'| 8529 | ||
| style='text-align:right'| 411 | | style='text-align:right'| 411 | ||
| style='text-align:right'| 9064 | | style='text-align:right'| 9064 | ||
| 36, 1, [http://genome-test. | | 36, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=braFlo2&position=Bf_V2_248:1229532-1229604 Bf_V2_248:1229532-1229604] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=braFlo2 plot braFlo2] | ||
|- | |- | ||
| | | 069 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| braRap1 | | style='text-align:center;'| braRap1 | ||
Line 893: | Line 885: | ||
| style='text-align:right'| 104 | | style='text-align:right'| 104 | ||
| style='text-align:right'| 3193 | | style='text-align:right'| 3193 | ||
| style='text-align:right'| 2810 | | style='text-align:right'| 2810 | ||
| style='text-align:right'| 47557 | | style='text-align:right'| 47557 | ||
| 587, 472, [http://genome-test. | | 587, 472, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=braRap1&position=chrUn_JH977260:73788-75433 chrUn_JH977260:73788-75433] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=braRap1 plot braRap1] | ||
|- | |- | ||
| | | 070 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bruMal1 bruMal1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 907: | Line 898: | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 6093 | | style='text-align:right'| 6093 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 18780 | | style='text-align:right'| 18780 | ||
| 87, 1, [http://genome-test. | | 87, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bruMal1&position=Bmal_supercontig14387:293-467 Bmal_supercontig14387:293-467] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bruMal1 plot bruMal1] | ||
|- | |- | ||
| | | 071 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bruMal2 bruMal2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 921: | Line 911: | ||
| style='text-align:right'| 124.5 | | style='text-align:right'| 124.5 | ||
| style='text-align:right'| 12221 | | style='text-align:right'| 12221 | ||
| style='text-align:right'| 431.5 | | style='text-align:right'| 431.5 | ||
| style='text-align:right'| 63506 | | style='text-align:right'| 63506 | ||
| 1000, 20, [http://genome-test. | | 1000, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bruMal2&position=Bmal_v3_scaffold83:22898-24917 Bmal_v3_scaffold83:22898-24917] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bruMal2 plot bruMal2] | ||
|- | |- | ||
| | | 072 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bubBub1 bubBub1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000471725.1/ GCF_000471725.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000471725.1/ GCF_000471725.1] | ||
| MaSuRCA v. 1.8.3 | | MaSuRCA v. 1.8.3 | ||
Line 935: | Line 924: | ||
| style='text-align:right'| 163 | | style='text-align:right'| 163 | ||
| style='text-align:right'| 395268 | | style='text-align:right'| 395268 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 251657 | | style='text-align:right'| 251657 | ||
| 990, 100, [http://genome-test. | | 990, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bubBub1&position=KI418684:2409965-2412044 KI418684:2409965-2412044] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bubBub1 plot bubBub1] | ||
|- | |- | ||
| | | 073 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bucRhi1 bucRhi1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000710305.1/ GCF_000710305.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000710305.1/ GCF_000710305.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 949: | Line 937: | ||
| style='text-align:right'| 114 | | style='text-align:right'| 114 | ||
| style='text-align:right'| 5089 | | style='text-align:right'| 5089 | ||
| style='text-align:right'| 78 | | style='text-align:right'| 78 | ||
| style='text-align:right'| 3263 | | style='text-align:right'| 3263 | ||
| 327, 10, [http://genome-test. | | 327, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bucRhi1&position=KL526600:8925-9588 KL526600:8925-9588] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=bucRhi1 plot bucRhi1] | ||
|- | |- | ||
| | | 075 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=burXyl1 burXyl1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 963: | Line 950: | ||
| style='text-align:right'| 601 | | style='text-align:right'| 601 | ||
| style='text-align:right'| 33110 | | style='text-align:right'| 33110 | ||
| style='text-align:right'| 301 | | style='text-align:right'| 301 | ||
| style='text-align:right'| 19553 | | style='text-align:right'| 19553 | ||
| 977, 300, [http://genome-test. | | 977, 300, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=burXyl1&position=scaffold00460:102617-104870 scaffold00460:102617-104870] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=burXyl1 plot burXyl1] | ||
|- | |- | ||
| | | 076 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeAng1 caeAng1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000165025.1/ GCA_000165025.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000165025.1/ GCA_000165025.1] | ||
| Velvet v. 0.7.56 | | Velvet v. 0.7.56 | ||
Line 977: | Line 963: | ||
| style='text-align:right'| 41 | | style='text-align:right'| 41 | ||
| style='text-align:right'| 16726 | | style='text-align:right'| 16726 | ||
| style='text-align:right'| 2 | | style='text-align:right'| 2 | ||
| style='text-align:right'| 1802 | | style='text-align:right'| 1802 | ||
| 46, 2, [http://genome-test. | | 46, 2, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeAng1&position=scafRNAPATH105:2285-2378 scafRNAPATH105:2285-2378] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeAng1 plot caeAng1] | ||
|- | |- | ||
| | | 077 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeAng2 caeAng2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 991: | Line 976: | ||
| style='text-align:right'| 46 | | style='text-align:right'| 46 | ||
| style='text-align:right'| 19505 | | style='text-align:right'| 19505 | ||
| style='text-align:right'| 2 | | style='text-align:right'| 2 | ||
| style='text-align:right'| 1495 | | style='text-align:right'| 1495 | ||
| 46, 2, [http://genome-test. | | 46, 2, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeAng2&position=Cang_2012_03_13_00008:384957-385050 Cang_2012_03_13_00008:384957-385050] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeAng2 plot caeAng2] | ||
|- | |- | ||
| | | 078 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeJap1 caeJap1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,005: | Line 989: | ||
| style='text-align:right'| 58 | | style='text-align:right'| 58 | ||
| style='text-align:right'| 10431 | | style='text-align:right'| 10431 | ||
| style='text-align:right'| 186 | | style='text-align:right'| 186 | ||
| style='text-align:right'| 27893 | | style='text-align:right'| 27893 | ||
| 687, 10, [http://genome-test. | | 687, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeJap1&position=chrUn:37794313-37795696 chrUn:37794313-37795696] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeJap1 plot caeJap1] | ||
|- | |- | ||
| | | 079 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeJap2 caeJap2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,019: | Line 1,002: | ||
| style='text-align:right'| 103 | | style='text-align:right'| 103 | ||
| style='text-align:right'| 130030 | | style='text-align:right'| 130030 | ||
| style='text-align:right'| 1018 | | style='text-align:right'| 1018 | ||
| style='text-align:right'| 891958 | | style='text-align:right'| 891958 | ||
| 707, 10, [http://genome-test. | | 707, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeJap2&position=chrUn:150512438-150513861 chrUn:150512438-150513861] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeJap2 plot caeJap2] | ||
|- | |- | ||
| | | 080 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| caeJap2a | | style='text-align:center;'| caeJap2a | ||
Line 1,033: | Line 1,015: | ||
| style='text-align:right'| 103 | | style='text-align:right'| 103 | ||
| style='text-align:right'| 129273 | | style='text-align:right'| 129273 | ||
| style='text-align:right'| 1018 | | style='text-align:right'| 1018 | ||
| style='text-align:right'| 890958 | | style='text-align:right'| 890958 | ||
| 707, 10, [http://genome-test. | | 707, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeJap2a&position=Cjap_Contig4853:3969-5392 Cjap_Contig4853:3969-5392] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeJap2a plot caeJap2a] | ||
|- | |- | ||
| | | 082 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeJap4 caeJap4] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000147155.1/ GCA_000147155.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000147155.1/ GCA_000147155.1] | ||
| Celera assembler v. 6.0 | | Celera assembler v. 6.0 | ||
Line 1,047: | Line 1,028: | ||
| style='text-align:right'| 98.5 | | style='text-align:right'| 98.5 | ||
| style='text-align:right'| 3188 | | style='text-align:right'| 3188 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 1468 | | style='text-align:right'| 1468 | ||
| 1000, 20, [http://genome-test. | | 1000, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeJap4&position=Scaffold17129:65445-67464 Scaffold17129:65445-67464] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeJap4 plot caeJap4] | ||
|- | |- | ||
| | | 083 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caePb1 caePb1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,061: | Line 1,041: | ||
| style='text-align:right'| 44 | | style='text-align:right'| 44 | ||
| style='text-align:right'| 9160 | | style='text-align:right'| 9160 | ||
| style='text-align:right'| 164 | | style='text-align:right'| 164 | ||
| style='text-align:right'| 37674 | | style='text-align:right'| 37674 | ||
| 476, 10, [http://genome-test. | | 476, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caePb1&position=chrUn:52430125-52431086 chrUn:52430125-52431086] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caePb1 plot caePb1] | ||
|- | |- | ||
| | | 084 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caePb2 caePb2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,075: | Line 1,054: | ||
| style='text-align:right'| 37 | | style='text-align:right'| 37 | ||
| style='text-align:right'| 3814 | | style='text-align:right'| 3814 | ||
| style='text-align:right'| 222 | | style='text-align:right'| 222 | ||
| style='text-align:right'| 63681 | | style='text-align:right'| 63681 | ||
| 230, 10, [http://genome-test. | | 230, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caePb2&position=chrUn:74484521-74484990 chrUn:74484521-74484990] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caePb2 plot caePb2] | ||
|- | |- | ||
| | | 085 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caePb3 caePb3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000143925.2/ GCA_000143925.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000143925.2/ GCA_000143925.2] | ||
| PCAP v. 9/3/04 | | PCAP v. 9/3/04 | ||
Line 1,089: | Line 1,067: | ||
| style='text-align:right'| 37 | | style='text-align:right'| 37 | ||
| style='text-align:right'| 4915 | | style='text-align:right'| 4915 | ||
| style='text-align:right'| 222 | | style='text-align:right'| 222 | ||
| style='text-align:right'| 74680 | | style='text-align:right'| 74680 | ||
| 230, 10, [http://genome-test. | | 230, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caePb3&position=Scfld02_75:384084-384553 Scfld02_75:384084-384553] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caePb3 plot caePb3] | ||
|- | |- | ||
| | | 086 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeRem1 caeRem1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,103: | Line 1,080: | ||
| style='text-align:right'| 96 | | style='text-align:right'| 96 | ||
| style='text-align:right'| 10213 | | style='text-align:right'| 10213 | ||
| style='text-align:right'| 133.5 | | style='text-align:right'| 133.5 | ||
| style='text-align:right'| 11238 | | style='text-align:right'| 11238 | ||
| 678, 10, [http://genome-test. | | 678, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeRem1&position=SuperCont3:723391-724756 SuperCont3:723391-724756] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeRem1 plot caeRem1] | ||
|- | |- | ||
| | | 087 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeRem2 caeRem2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,117: | Line 1,093: | ||
| style='text-align:right'| 96 | | style='text-align:right'| 96 | ||
| style='text-align:right'| 10213 | | style='text-align:right'| 10213 | ||
| style='text-align:right'| 133.5 | | style='text-align:right'| 133.5 | ||
| style='text-align:right'| 11238 | | style='text-align:right'| 11238 | ||
| 678, 10, [http://genome-test. | | 678, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeRem2&position=chrUn:13919319-13920684 chrUn:13919319-13920684] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeRem2 plot caeRem2] | ||
|- | |- | ||
| | | 088 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeRem3 caeRem3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,131: | Line 1,106: | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 5760 | | style='text-align:right'| 5760 | ||
| style='text-align:right'| 197.5 | | style='text-align:right'| 197.5 | ||
| style='text-align:right'| 14178 | | style='text-align:right'| 14178 | ||
| 460, 10, [http://genome-test. | | 460, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeRem3&position=chrUn:27560772-27561701 chrUn:27560772-27561701] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeRem3 plot caeRem3] | ||
|- | |- | ||
| | | 089 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeRem4 caeRem4] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000149515.1/ GCF_000149515.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000149515.1/ GCF_000149515.1] | ||
| tbd | | tbd | ||
Line 1,145: | Line 1,119: | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 5760 | | style='text-align:right'| 5760 | ||
| style='text-align:right'| 197.5 | | style='text-align:right'| 197.5 | ||
| style='text-align:right'| 14178 | | style='text-align:right'| 14178 | ||
| 460, 10, [http://genome-test. | | 460, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeRem4&position=Crem_Contig253:25277-26206 Crem_Contig253:25277-26206] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeRem4 plot caeRem4] | ||
|- | |- | ||
| | | 090 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeSp111 caeSp111] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000186765.1/ GCA_000186765.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000186765.1/ GCA_000186765.1] | ||
| Celera assembler v. 6.0 | | Celera assembler v. 6.0 | ||
Line 1,159: | Line 1,132: | ||
| style='text-align:right'| 194.5 | | style='text-align:right'| 194.5 | ||
| style='text-align:right'| 760 | | style='text-align:right'| 760 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 80 | | style='text-align:right'| 80 | ||
| 333, 20, [http://genome-test. | | 333, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeSp111&position=Scaffold629:32984714-32985399 Scaffold629:32984714-32985399] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeSp111 plot caeSp111] | ||
|- | |- | ||
| | | 091 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeSp51 caeSp51] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,173: | Line 1,145: | ||
| style='text-align:right'| 34 | | style='text-align:right'| 34 | ||
| style='text-align:right'| 730 | | style='text-align:right'| 730 | ||
| style='text-align:right'| 12.5 | | style='text-align:right'| 12.5 | ||
| style='text-align:right'| 894 | | style='text-align:right'| 894 | ||
| 201, 3, [http://genome-test. | | 201, 3, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeSp51&position=Csp5_scaffold_09411:792-1196 Csp5_scaffold_09411:792-1196] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeSp51 plot caeSp51] | ||
|- | |- | ||
| | | 092 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeSp71 caeSp71] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,187: | Line 1,158: | ||
| style='text-align:right'| 47 | | style='text-align:right'| 47 | ||
| style='text-align:right'| 30250 | | style='text-align:right'| 30250 | ||
| style='text-align:right'| 213 | | style='text-align:right'| 213 | ||
| style='text-align:right'| 312209 | | style='text-align:right'| 312209 | ||
| 162, 20, [http://genome-test. | | 162, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeSp71&position=Scaffold11:29462-29805 Scaffold11:29462-29805] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeSp71 plot caeSp71] | ||
|- | |- | ||
| | | 093 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeSp91 caeSp91] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,201: | Line 1,171: | ||
| style='text-align:right'| 217.5 | | style='text-align:right'| 217.5 | ||
| style='text-align:right'| 7172 | | style='text-align:right'| 7172 | ||
| style='text-align:right'| 8745 | | style='text-align:right'| 8745 | ||
| style='text-align:right'| 180575 | | style='text-align:right'| 180575 | ||
| 1000, 20, [http://genome-test. | | 1000, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeSp91&position=Scaffold7498:303469-305488 Scaffold7498:303469-305488] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=caeSp91 plot caeSp91] | ||
|- | |- | ||
| | | 094 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=calAnn1 calAnn1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699085.1/ GCF_000699085.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699085.1/ GCF_000699085.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,215: | Line 1,184: | ||
| style='text-align:right'| 127 | | style='text-align:right'| 127 | ||
| style='text-align:right'| 16337 | | style='text-align:right'| 16337 | ||
| style='text-align:right'| 1006 | | style='text-align:right'| 1006 | ||
| style='text-align:right'| 168943 | | style='text-align:right'| 168943 | ||
| 440, 38, [http://genome-test. | | 440, 38, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=calAnn1&position=KL218155:301090-302007 KL218155:301090-302007] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=calAnn1 plot calAnn1] | ||
|- | |- | ||
| | | 095 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=calJac1 calJac1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,229: | Line 1,197: | ||
| style='text-align:right'| 42 | | style='text-align:right'| 42 | ||
| style='text-align:right'| 129367 | | style='text-align:right'| 129367 | ||
| style='text-align:right'| 182 | | style='text-align:right'| 182 | ||
| style='text-align:right'| 377725 | | style='text-align:right'| 377725 | ||
| 937, 10, [http://genome-test. | | 937, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=calJac1&position=Contig4771:110891-112774 Contig4771:110891-112774] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=calJac1 plot calJac1] | ||
|- | |- | ||
| | | 096 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004665.1/ GCF_000004665.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004665.1/ GCF_000004665.1] | ||
| PCAP v. 2009 | | PCAP v. 2009 | ||
Line 1,243: | Line 1,210: | ||
| style='text-align:right'| 43 | | style='text-align:right'| 43 | ||
| style='text-align:right'| 116646 | | style='text-align:right'| 116646 | ||
| style='text-align:right'| 183.5 | | style='text-align:right'| 183.5 | ||
| style='text-align:right'| 452860 | | style='text-align:right'| 452860 | ||
| 807, 10, [http://genome-test. | | 807, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=calJac3&position=chr3:111956760-111958383 chr3:111956760-111958383] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=calJac3 plot calJac3] | ||
|- | |- | ||
| | | 097 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=calMil1 calMil1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000165045.1/ GCF_000165045.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000165045.1/ GCF_000165045.1] | ||
| Celera v. 6.1 | | Celera v. 6.1 | ||
Line 1,257: | Line 1,223: | ||
| style='text-align:right'| 123 | | style='text-align:right'| 123 | ||
| style='text-align:right'| 8335 | | style='text-align:right'| 8335 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 70257 | | style='text-align:right'| 70257 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=calMil1&position=KI635945:3331497-3333596 KI635945:3331497-3333596] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=calMil1 plot calMil1] | ||
|- | |- | ||
| | | 098 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=camFer1 camFer1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000311805.1/ GCF_000311805.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000311805.1/ GCF_000311805.1] | ||
| SOAPdenovo v. V1.05 | | SOAPdenovo v. V1.05 | ||
Line 1,271: | Line 1,236: | ||
| style='text-align:right'| 205 | | style='text-align:right'| 205 | ||
| style='text-align:right'| 2059 | | style='text-align:right'| 2059 | ||
| style='text-align:right'| 129 | | style='text-align:right'| 129 | ||
| style='text-align:right'| 2031 | | style='text-align:right'| 2031 | ||
| 237, 2, [http://genome-test. | | 237, 2, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=camFer1&position=KB018701:319294-319769 KB018701:319294-319769] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=camFer1 plot camFer1] | ||
|- | |- | ||
| | | 099 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=canFam1 canFam1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,285: | Line 1,249: | ||
| style='text-align:right'| 153 | | style='text-align:right'| 153 | ||
| style='text-align:right'| 2669 | | style='text-align:right'| 2669 | ||
| style='text-align:right'| 210.5 | | style='text-align:right'| 210.5 | ||
| style='text-align:right'| 8118 | | style='text-align:right'| 8118 | ||
| 104, 1, [http://genome-test. | | 104, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=canFam1&position=chr18:45376349-45376557 chr18:45376349-45376557] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=canFam1 plot canFam1] | ||
|- | |- | ||
| | | 100 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=canFam2 canFam2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,299: | Line 1,262: | ||
| style='text-align:right'| 199.5 | | style='text-align:right'| 199.5 | ||
| style='text-align:right'| 8095 | | style='text-align:right'| 8095 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 5245 | | style='text-align:right'| 5245 | ||
| 746, 1, [http://genome-test. | | 746, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=canFam2&position=chrUn:76334072-76335564 chrUn:76334072-76335564] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=canFam2 plot canFam2] | ||
|- | |- | ||
| | | 101 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002285.3/ GCF_000002285.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002285.3/ GCF_000002285.3] | ||
| Arachne v. April 2010 | | Arachne v. April 2010 | ||
Line 1,313: | Line 1,275: | ||
| style='text-align:right'| 175.5 | | style='text-align:right'| 175.5 | ||
| style='text-align:right'| 8234 | | style='text-align:right'| 8234 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 4545 | | style='text-align:right'| 4545 | ||
| 746, 10, [http://genome-test. | | 746, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=canFam3&position=chrUn_JH374132:3424-4925 chrUn_JH374132:3424-4925] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=canFam3 plot canFam3] | ||
|- | |- | ||
| | | 104 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=capCar1 capCar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000700745.1/ GCF_000700745.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000700745.1/ GCF_000700745.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,327: | Line 1,288: | ||
| style='text-align:right'| 105 | | style='text-align:right'| 105 | ||
| style='text-align:right'| 618 | | style='text-align:right'| 618 | ||
| style='text-align:right'| 48 | | style='text-align:right'| 48 | ||
| style='text-align:right'| 354 | | style='text-align:right'| 354 | ||
| 139, 26, [http://genome-test. | | 139, 26, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=capCar1&position=KL359104:23556-23859 KL359104:23556-23859] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=capCar1 plot capCar1] | ||
|- | |- | ||
| | | 105 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000317765.1/ GCF_000317765.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000317765.1/ GCF_000317765.1] | ||
| SOAPdenovo v. 1.03 | | SOAPdenovo v. 1.03 | ||
Line 1,341: | Line 1,301: | ||
| style='text-align:right'| 41 | | style='text-align:right'| 41 | ||
| style='text-align:right'| 71810 | | style='text-align:right'| 71810 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 546475 | | style='text-align:right'| 546475 | ||
| 988, 16, [http://genome-test. | | 988, 16, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=capHir1&position=chr16:40339512-40341503 chr16:40339512-40341503] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=capHir1 plot capHir1] | ||
|- | |- | ||
| | | 106 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=carCri1 carCri1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690535.1/ GCF_000690535.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690535.1/ GCF_000690535.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,355: | Line 1,314: | ||
| style='text-align:right'| 161 | | style='text-align:right'| 161 | ||
| style='text-align:right'| 644 | | style='text-align:right'| 644 | ||
| style='text-align:right'| 210.5 | | style='text-align:right'| 210.5 | ||
| style='text-align:right'| 878 | | style='text-align:right'| 878 | ||
| 52, 13, [http://genome-test. | | 52, 13, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=carCri1&position=KK509558:67998-68114 KK509558:67998-68114] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=carCri1 plot carCri1] | ||
|- | |- | ||
| | | 107 | ||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=casCan1 casCan1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001984765.1/ GCF_001984765.1] | |||
| ABySS v. 1.9.0; Canu v. 1.2; Platanus v. 1.2.4 | |||
| style='text-align:right'| 19 | |||
| style='text-align:right'| 90 | |||
| style='text-align:right'| 2464 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 1900 | |||
| 952, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=casCan1&position=NW_017870822v1:53223-55226 NW_017870822v1:53223-55226] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=casCan1 plot casCan1] | |||
|- | |||
| 108 | |||
| 2014 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cavApe1 cavApe1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 551 | |||
| style='text-align:right'| 47 | |||
| style='text-align:right'| 32236 | |||
| style='text-align:right'| 24 | |||
| style='text-align:right'| 184424 | |||
| 82, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cavApe1&position=AVPZ01000046v1:610580-610744 AVPZ01000046v1:610580-610744] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cavApe1 plot cavApe1] | |||
|- | |||
| 109 | |||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cavPor2 cavPor2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,369: | Line 1,353: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 164744 | | style='text-align:right'| 164744 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 166667 | | style='text-align:right'| 166667 | ||
| 986, 100, [http://genome-test. | | 986, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cavPor2&position=scaffold_291164:123135-125206 scaffold_291164:123135-125206] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cavPor2 plot cavPor2] | ||
|- | |- | ||
| | | 110 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151735.1/ GCF_000151735.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151735.1/ GCF_000151735.1] | ||
| unknown v. before 2008 | | unknown v. before 2008 | ||
Line 1,383: | Line 1,366: | ||
| style='text-align:right'| 145 | | style='text-align:right'| 145 | ||
| style='text-align:right'| 552 | | style='text-align:right'| 552 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 961 | | style='text-align:right'| 961 | ||
| 313, 100, [http://genome-test. | | 313, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cavPor3&position=scaffold_799:9280-10005 scaffold_799:9280-10005] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cavPor3 plot cavPor3] | ||
|- | |- | ||
| | | 111 | ||
| 2002 | | 2002 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cb1 cb1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,397: | Line 1,379: | ||
| style='text-align:right'| 163 | | style='text-align:right'| 163 | ||
| style='text-align:right'| 20408 | | style='text-align:right'| 20408 | ||
| style='text-align:right'| 145 | | style='text-align:right'| 145 | ||
| style='text-align:right'| 39126 | | style='text-align:right'| 39126 | ||
| 645, 10, [http://genome-test. | | 645, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cb1&position=chrUn:51532611-51533910 chrUn:51532611-51533910] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cb1 plot cb1] | ||
|- | |- | ||
| | | 112 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cb2 cb2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,411: | Line 1,392: | ||
| style='text-align:right'| 153 | | style='text-align:right'| 153 | ||
| style='text-align:right'| 21033 | | style='text-align:right'| 21033 | ||
| style='text-align:right'| 163.5 | | style='text-align:right'| 163.5 | ||
| style='text-align:right'| 42461 | | style='text-align:right'| 42461 | ||
| 645, 10, [http://genome-test. | | 645, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cb2&position=chrI:9244132-9245431 chrI:9244132-9245431] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cb2 plot cb2] | ||
|- | |- | ||
| | | 113 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cb3 cb3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,425: | Line 1,405: | ||
| style='text-align:right'| 148.5 | | style='text-align:right'| 148.5 | ||
| style='text-align:right'| 19176 | | style='text-align:right'| 19176 | ||
| style='text-align:right'| 166.5 | | style='text-align:right'| 166.5 | ||
| style='text-align:right'| 39580 | | style='text-align:right'| 39580 | ||
| 645, 10, [http://genome-test. | | 645, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cb3&position=chrI:9355978-9357277 chrI:9355978-9357277] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cb3 plot cb3] | ||
|- | |- | ||
| | | 114 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,439: | Line 1,418: | ||
| style='text-align:right'| 153 | | style='text-align:right'| 153 | ||
| style='text-align:right'| 20969 | | style='text-align:right'| 20969 | ||
| style='text-align:right'| 151.5 | | style='text-align:right'| 151.5 | ||
| style='text-align:right'| 40114 | | style='text-align:right'| 40114 | ||
| 645, 10, [http://genome-test. | | 645, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cb4&position=chrI:11247250-11248549 chrI:11247250-11248549] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cb4 plot cb4] | ||
|- | |||
| 125 | |||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cebCap1 cebCap1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001604975.1/ GCF_001604975.1] | |||
| AllPaths-LG v. October 2015 | |||
| style='text-align:right'| 1519 | |||
| style='text-align:right'| 64 | |||
| style='text-align:right'| 128197 | |||
| style='text-align:right'| 1 | |||
| style='text-align:right'| 415272 | |||
| 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cebCap1&position=NW_016107342v1:6176614-6178614 NW_016107342v1:6176614-6178614] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cebCap1 plot cebCap1] | |||
|- | |||
| 126 | |||
| 2015 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cerAty1 cerAty1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000955945.1/ GCF_000955945.1] | |||
| AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9 | |||
| style='text-align:right'| 433 | |||
| style='text-align:right'| 92 | |||
| style='text-align:right'| 41269 | |||
| style='text-align:right'| 50 | |||
| style='text-align:right'| 137883 | |||
| 865, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cerAty1&position=NW_012007258v1:11321204-11322958 NW_012007258v1:11321204-11322958] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cerAty1 plot cerAty1] | |||
|- | |- | ||
| | | 127 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000283155.1/ GCF_000283155.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000283155.1/ GCF_000283155.1] | ||
| ALLPATHS v. R41370 | | ALLPATHS v. R41370 | ||
Line 1,453: | Line 1,457: | ||
| style='text-align:right'| 68 | | style='text-align:right'| 68 | ||
| style='text-align:right'| 129697 | | style='text-align:right'| 129697 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 270005 | | style='text-align:right'| 270005 | ||
| 815, 100, [http://genome-test. | | 815, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cerSim1&position=JH767775:6384924-6386653 JH767775:6384924-6386653] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cerSim1 plot cerSim1] | ||
|- | |- | ||
| | | 128 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1 chaVoc1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708025.1/ GCF_000708025.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708025.1/ GCF_000708025.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,467: | Line 1,470: | ||
| style='text-align:right'| 200 | | style='text-align:right'| 200 | ||
| style='text-align:right'| 13700 | | style='text-align:right'| 13700 | ||
| style='text-align:right'| 1514 | | style='text-align:right'| 1514 | ||
| style='text-align:right'| 133699 | | style='text-align:right'| 133699 | ||
| 780, 257, [http://genome-test. | | 780, 257, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1&position=KL409415:13594818-13596634 KL409415:13594818-13596634] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chaVoc1 plot chaVoc1] | ||
|- | |- | ||
| | | 129 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2 chaVoc2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708025.1/ GCF_000708025.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708025.1/ GCF_000708025.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,481: | Line 1,483: | ||
| style='text-align:right'| 200 | | style='text-align:right'| 200 | ||
| style='text-align:right'| 13700 | | style='text-align:right'| 13700 | ||
| style='text-align:right'| 1514 | | style='text-align:right'| 1514 | ||
| style='text-align:right'| 133699 | | style='text-align:right'| 133699 | ||
| 780, 257, [http://genome-test. | | 780, 257, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2&position=KL873469:13594818-13596634 KL873469:13594818-13596634] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chaVoc2 plot chaVoc2] | ||
|- | |- | ||
| | | 130 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1 cheMyd1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000344595.1/ GCF_000344595.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000344595.1/ GCF_000344595.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 1,495: | Line 1,496: | ||
| style='text-align:right'| 204 | | style='text-align:right'| 204 | ||
| style='text-align:right'| 37111 | | style='text-align:right'| 37111 | ||
| style='text-align:right'| 798 | | style='text-align:right'| 798 | ||
| style='text-align:right'| 277853 | | style='text-align:right'| 277853 | ||
| 314, 27, [http://genome-test. | | 314, 27, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1&position=KB535131:1778822-1779476 KB535131:1778822-1779476] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cheMyd1 plot cheMyd1] | ||
|- | |- | ||
| | | 131 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ GCA_000276665.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ GCA_000276665.1] | ||
| ALLPATHS v. R40776 | | ALLPATHS v. R40776 | ||
Line 1,509: | Line 1,509: | ||
| style='text-align:right'| 70 | | style='text-align:right'| 70 | ||
| style='text-align:right'| 101029 | | style='text-align:right'| 101029 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 267937 | | style='text-align:right'| 267937 | ||
| 996, 100, [http://genome-test. | | 996, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chiLan1&position=JH721987:2542897-2544988 JH721987:2542897-2544988] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chiLan1 plot chiLan1] | ||
|- | |- | ||
| | | 132 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chlSab1 chlSab1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,523: | Line 1,522: | ||
| style='text-align:right'| 81 | | style='text-align:right'| 81 | ||
| style='text-align:right'| 2123928 | | style='text-align:right'| 2123928 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 396229 | | style='text-align:right'| 396229 | ||
| 923, 1, [http://genome-test. | | 923, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chlSab1&position=chrX:117110178-117112024 chrX:117110178-117112024] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chlSab1 plot chlSab1] | ||
|- | |- | ||
| | | 133 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000409795.2/ GCF_000409795.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000409795.2/ GCF_000409795.2] | ||
| ALLPATHS and Newbler v. 13-Feb-2013 | | ALLPATHS and Newbler v. 13-Feb-2013 | ||
Line 1,537: | Line 1,535: | ||
| style='text-align:right'| 81 | | style='text-align:right'| 81 | ||
| style='text-align:right'| 2123656 | | style='text-align:right'| 2123656 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 396199 | | style='text-align:right'| 396199 | ||
| 923, 1, [http://genome-test. | | 923, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chlSab2&position=chrX:117110178-117112024 chrX:117110178-117112024] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chlSab2 plot chlSab2] | ||
|- | |- | ||
| | | 134 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chlUnd1 chlUnd1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000695195.1/ GCF_000695195.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000695195.1/ GCF_000695195.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,551: | Line 1,548: | ||
| style='text-align:right'| 293 | | style='text-align:right'| 293 | ||
| style='text-align:right'| 1223 | | style='text-align:right'| 1223 | ||
| style='text-align:right'| 129 | | style='text-align:right'| 129 | ||
| style='text-align:right'| 617 | | style='text-align:right'| 617 | ||
| 310, 65, [http://genome-test. | | 310, 65, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chlUnd1&position=KK747264:28313-28997 KK747264:28313-28997] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chlUnd1 plot chlUnd1] | ||
|- | |- | ||
| | | 135 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000164785.1/ GCA_000164785.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000164785.1/ GCA_000164785.1] | ||
| tbd | | tbd | ||
Line 1,565: | Line 1,561: | ||
| style='text-align:right'| 54.5 | | style='text-align:right'| 54.5 | ||
| style='text-align:right'| 14520 | | style='text-align:right'| 14520 | ||
| style='text-align:right'| 145.5 | | style='text-align:right'| 145.5 | ||
| style='text-align:right'| 33892 | | style='text-align:right'| 33892 | ||
| 986, 100, [http://genome-test. | | 986, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=choHof1&position=scaffold_56240:3133-5204 scaffold_56240:3133-5204] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=choHof1 plot choHof1] | ||
|- | |- | ||
| | | 136 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000296735.1/ GCF_000296735.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000296735.1/ GCF_000296735.1] | ||
| allpaths v. R42316 HAPLOIDIFY=True | | allpaths v. R42316 HAPLOIDIFY=True | ||
Line 1,579: | Line 1,574: | ||
| style='text-align:right'| 76 | | style='text-align:right'| 76 | ||
| style='text-align:right'| 339291 | | style='text-align:right'| 339291 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 720504 | | style='text-align:right'| 720504 | ||
| 991, 100, [http://genome-test. | | 991, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1&position=JH823765:402000-404081 JH823765:402000-404081] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chrAsi1 plot chrAsi1] | ||
|- | |- | ||
| | | 137 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,593: | Line 1,587: | ||
| style='text-align:right'| 79 | | style='text-align:right'| 79 | ||
| style='text-align:right'| 738667 | | style='text-align:right'| 738667 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 1230115 | | style='text-align:right'| 1230115 | ||
| 64, 1, [http://genome-test. | | 64, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chrPic1&position=JH584466:5301285-5301413 JH584466:5301285-5301413] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chrPic1 plot chrPic1] | ||
|- | |- | ||
| | | 138 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chrPic2 chrPic2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000241765.2/ GCA_000241765.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000241765.2/ GCA_000241765.2] | ||
| Newbler v. 2.6 | | Newbler v. 2.6 | ||
Line 1,607: | Line 1,600: | ||
| style='text-align:right'| 77 | | style='text-align:right'| 77 | ||
| style='text-align:right'| 629230 | | style='text-align:right'| 629230 | ||
| style='text-align:right'| 206 | | style='text-align:right'| 206 | ||
| style='text-align:right'| 2593694 | | style='text-align:right'| 2593694 | ||
| 1000, 10, [http://genome-test. | | 1000, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=chrPic2&position=chrUn_KK083066v1:1300793-1302802 chrUn_KK083066v1:1300793-1302802] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=chrPic2 plot chrPic2] | ||
|- | |- | ||
| | | 139 | ||
| 2002 | | 2002 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ci1 ci1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000183065.1/ GCA_000183065.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000183065.1/ GCA_000183065.1] | ||
| tbd | | tbd | ||
Line 1,621: | Line 1,613: | ||
| style='text-align:right'| 311.5 | | style='text-align:right'| 311.5 | ||
| style='text-align:right'| 8955 | | style='text-align:right'| 8955 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 11060 | | style='text-align:right'| 11060 | ||
| 833, 50, [http://genome-test. | | 833, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ci1&position=Scaffold_7:289989-291704 Scaffold_7:289989-291704] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ci1 plot ci1] | ||
|- | |- | ||
| | | 140 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ci2 ci2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,635: | Line 1,626: | ||
| style='text-align:right'| 472.5 | | style='text-align:right'| 472.5 | ||
| style='text-align:right'| 945 | | style='text-align:right'| 945 | ||
| style='text-align:right'| 173 | | style='text-align:right'| 173 | ||
| style='text-align:right'| 346 | | style='text-align:right'| 346 | ||
| 843, 296, [http://genome-test. | | 843, 296, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ci2&position=scaffold_403:40134-42115 scaffold_403:40134-42115] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ci2 plot ci2] | ||
|- | |- | ||
| | | 141 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ci3 ci3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000224145.1/ GCF_000224145.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000224145.1/ GCF_000224145.1] | ||
| tbd | | tbd | ||
Line 1,649: | Line 1,639: | ||
| style='text-align:right'| 258.5 | | style='text-align:right'| 258.5 | ||
| style='text-align:right'| 6455 | | style='text-align:right'| 6455 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 9493 | | style='text-align:right'| 9493 | ||
| 597, 50, [http://genome-test. | | 597, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ci3&position=chrUn_NW_004190451v1:5050-6293 chrUn_NW_004190451v1:5050-6293] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ci3 plot ci3] | ||
|- | |- | ||
| | | 142 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cioSav1 cioSav1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,663: | Line 1,652: | ||
| style='text-align:right'| 124 | | style='text-align:right'| 124 | ||
| style='text-align:right'| 1554 | | style='text-align:right'| 1554 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 2755 | | style='text-align:right'| 2755 | ||
| 296, 100, [http://genome-test. | | 296, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cioSav1&position=ps_146:263977-264668 ps_146:263977-264668] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cioSav1 plot cioSav1] | ||
|- | |- | ||
| | | 143 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cioSav2 cioSav2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,677: | Line 1,665: | ||
| style='text-align:right'| 402.5 | | style='text-align:right'| 402.5 | ||
| style='text-align:right'| 2394 | | style='text-align:right'| 2394 | ||
| style='text-align:right'| 200 | | style='text-align:right'| 200 | ||
| style='text-align:right'| 1668 | | style='text-align:right'| 1668 | ||
| 636, 10, [http://genome-test. | | 636, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cioSav2&position=reftig_72:2536022-2537303 reftig_72:2536022-2537303] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cioSav2 plot cioSav2] | ||
|- | |- | ||
| | | 144 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=colAng1 colAng1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000951035.1/ GCF_000951035.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000951035.1/ GCF_000951035.1] | ||
| AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 | | AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 | ||
Line 1,691: | Line 1,678: | ||
| style='text-align:right'| 77 | | style='text-align:right'| 77 | ||
| style='text-align:right'| 626146 | | style='text-align:right'| 626146 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 1472786 | | style='text-align:right'| 1472786 | ||
| 996, 50, [http://genome-test. | | 996, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=colAng1&position=NW_012119888v1:35718-37759 NW_012119888v1:35718-37759] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=colAng1 plot colAng1] | ||
|- | |- | ||
| | | 145 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=colLiv1 colLiv1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000337935.1/ GCF_000337935.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000337935.1/ GCF_000337935.1] | ||
| SOAPdenovo v. 2.0 | | SOAPdenovo v. 2.0 | ||
Line 1,705: | Line 1,691: | ||
| style='text-align:right'| 116 | | style='text-align:right'| 116 | ||
| style='text-align:right'| 3824 | | style='text-align:right'| 3824 | ||
| style='text-align:right'| 1290 | | style='text-align:right'| 1290 | ||
| style='text-align:right'| 32865 | | style='text-align:right'| 32865 | ||
| 33, 57, [http://genome-test. | | 33, 57, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=colLiv1&position=KB379196:2050-2172 KB379196:2050-2172] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=colLiv1 plot colLiv1] | ||
|- | |- | ||
| | | 146 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=colStr1 colStr1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690715.1/ GCF_000690715.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690715.1/ GCF_000690715.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,719: | Line 1,704: | ||
| style='text-align:right'| 161 | | style='text-align:right'| 161 | ||
| style='text-align:right'| 910 | | style='text-align:right'| 910 | ||
| style='text-align:right'| 308 | | style='text-align:right'| 308 | ||
| style='text-align:right'| 1203 | | style='text-align:right'| 1203 | ||
| 362, 113, [http://genome-test. | | 362, 113, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=colStr1&position=KK530485:3407-4243 KK530485:3407-4243] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=colStr1 plot colStr1] | ||
|- | |- | ||
| | | 147 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000260355.1/ GCF_000260355.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000260355.1/ GCF_000260355.1] | ||
| AllPaths v. 2012 | | AllPaths v. 2012 | ||
Line 1,733: | Line 1,717: | ||
| style='text-align:right'| 72 | | style='text-align:right'| 72 | ||
| style='text-align:right'| 108033 | | style='text-align:right'| 108033 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 233431 | | style='text-align:right'| 233431 | ||
| 924, 100, [http://genome-test. | | 924, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=conCri1&position=JH655880:49229854-49231801 JH655880:49229854-49231801] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=conCri1 plot conCri1] | ||
|- | |- | ||
| | | 148 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=corBra1 corBra1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691975.1/ GCF_000691975.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691975.1/ GCF_000691975.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,747: | Line 1,730: | ||
| style='text-align:right'| 90 | | style='text-align:right'| 90 | ||
| style='text-align:right'| 7520 | | style='text-align:right'| 7520 | ||
| style='text-align:right'| 1445 | | style='text-align:right'| 1445 | ||
| style='text-align:right'| 112176 | | style='text-align:right'| 112176 | ||
| 259, 28, [http://genome-test. | | 259, 28, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=corBra1&position=KK718436:193091-193636 KK718436:193091-193636] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=corBra1 plot corBra1] | ||
|- | |- | ||
| | | 149 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=corCor1 corCor1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000738735.1/ GCF_000738735.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000738735.1/ GCF_000738735.1] | ||
| AllPaths v. Allpaths-LG version 41687 | | AllPaths v. Allpaths-LG version 41687 | ||
Line 1,761: | Line 1,743: | ||
| style='text-align:right'| 81 | | style='text-align:right'| 81 | ||
| style='text-align:right'| 2189 | | style='text-align:right'| 2189 | ||
| style='text-align:right'| 1027 | | style='text-align:right'| 1027 | ||
| style='text-align:right'| 27602 | | style='text-align:right'| 27602 | ||
| 81, 1, [http://genome-test. | | 81, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=corCor1&position=KL997637:955359-955521 KL997637:955359-955521] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=corCor1 plot corCor1] | ||
|- | |- | ||
| | | 150 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cotJap1 cotJap1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000511605.1/ GCA_000511605.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000511605.1/ GCA_000511605.1] | ||
| Soapdenovo v. 1.0.5b; bwa v. 0.5.9; SSPACE v. 1.2 | | Soapdenovo v. 1.0.5b; bwa v. 0.5.9; SSPACE v. 1.2 | ||
Line 1,775: | Line 1,756: | ||
| style='text-align:right'| 33 | | style='text-align:right'| 33 | ||
| style='text-align:right'| 38101 | | style='text-align:right'| 38101 | ||
| style='text-align:right'| 68 | | style='text-align:right'| 68 | ||
| style='text-align:right'| 67651 | | style='text-align:right'| 67651 | ||
| 214, 1, [http://genome-test. | | 214, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cotJap1&position=DF262918:84572-85000 DF262918:84572-85000] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cotJap1 plot cotJap1] | ||
|- | |||
| 151 | |||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cotJap2 cotJap2] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001577835.1/ GCF_001577835.1] | |||
| ALLPATHS-LG v. 4.7.0 | |||
| style='text-align:right'| 628 | |||
| style='text-align:right'| 81 | |||
| style='text-align:right'| 49843 | |||
| style='text-align:right'| 1 | |||
| style='text-align:right'| 166844 | |||
| 808, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cotJap2&position=chr2:125266985-125268601 chr2:125266985-125268601] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cotJap2 plot cotJap2] | |||
|- | |- | ||
| | | 152 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000419365.1/ GCF_000419365.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000419365.1/ GCF_000419365.1] | ||
| SOAPdenovo v. 2.2 | | SOAPdenovo v. 2.2 | ||
Line 1,789: | Line 1,782: | ||
| style='text-align:right'| 217 | | style='text-align:right'| 217 | ||
| style='text-align:right'| 196516 | | style='text-align:right'| 196516 | ||
| style='text-align:right'| 1481.5 | | style='text-align:right'| 1481.5 | ||
| style='text-align:right'| 1359815 | | style='text-align:right'| 1359815 | ||
| 422, 10, [http://genome-test. | | 422, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=criGri1&position=KE379019:554914-555767 KE379019:554914-555767] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=criGri1 plot criGri1] | ||
|- | |- | ||
| | | 153 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV1 criGriChoV1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000223135.1/ GCF_000223135.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000223135.1/ GCF_000223135.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 1,803: | Line 1,795: | ||
| style='text-align:right'| 162 | | style='text-align:right'| 162 | ||
| style='text-align:right'| 53736 | | style='text-align:right'| 53736 | ||
| style='text-align:right'| 1526 | | style='text-align:right'| 1526 | ||
| style='text-align:right'| 472877 | | style='text-align:right'| 472877 | ||
| 369, 10, [http://genome-test. | | 369, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV1&position=NW_003615838v1:158557-159304 NW_003615838v1:158557-159304] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=criGriChoV1 plot criGriChoV1] | ||
|- | |||
| 154 | |||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV2 criGriChoV2] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 9581 | |||
| style='text-align:right'| 199 | |||
| style='text-align:right'| 1595358 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 961598 | |||
| 293, 30, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV2&position=LT883673v1:24540519-24541134 LT883673v1:24540519-24541134] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=criGriChoV2 plot criGriChoV2] | |||
|- | |- | ||
| | | 155 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cucCan1 cucCan1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000709325.1/ GCF_000709325.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000709325.1/ GCF_000709325.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 1,817: | Line 1,821: | ||
| style='text-align:right'| 242 | | style='text-align:right'| 242 | ||
| style='text-align:right'| 41656 | | style='text-align:right'| 41656 | ||
| style='text-align:right'| 972 | | style='text-align:right'| 972 | ||
| style='text-align:right'| 203191 | | style='text-align:right'| 203191 | ||
| 961, 69, [http://genome-test. | | 961, 69, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cucCan1&position=KL448150:311854-313844 KL448150:311854-313844] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cucCan1 plot cucCan1] | ||
|- | |- | ||
| | | 156 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cynSem1 cynSem1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000523025.1/ GCF_000523025.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000523025.1/ GCF_000523025.1] | ||
| SOAPdenovo v. April-2011 | | SOAPdenovo v. April-2011 | ||
Line 1,831: | Line 1,834: | ||
| style='text-align:right'| 311.5 | | style='text-align:right'| 311.5 | ||
| style='text-align:right'| 27891 | | style='text-align:right'| 27891 | ||
| style='text-align:right'| 935.5 | | style='text-align:right'| 935.5 | ||
| style='text-align:right'| 165198 | | style='text-align:right'| 165198 | ||
| 568, 38, [http://genome-test. | | 568, 38, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cynSem1&position=chr11:13981930-13983103 chr11:13981930-13983103] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cynSem1 plot cynSem1] | ||
|- | |- | ||
| | | 157 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cypVar1 cypVar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000732505.1/ GCA_000732505.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000732505.1/ GCA_000732505.1] | ||
| AllPaths v. May 2014 | | AllPaths v. May 2014 | ||
Line 1,845: | Line 1,847: | ||
| style='text-align:right'| 89 | | style='text-align:right'| 89 | ||
| style='text-align:right'| 423504 | | style='text-align:right'| 423504 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 2210432 | | style='text-align:right'| 2210432 | ||
| 1000, 1, [http://genome-test. | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=cypVar1&position=KL653732:89449-91449 KL653732:89449-91449] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=cypVar1 plot cypVar1] | ||
|- | |- | ||
| | | 158 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer1 danRer1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,859: | Line 1,860: | ||
| style='text-align:right'| 57 | | style='text-align:right'| 57 | ||
| style='text-align:right'| 186413 | | style='text-align:right'| 186413 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 322061 | | style='text-align:right'| 322061 | ||
| 1000, 10, [http://genome-test. | | 1000, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer1&position=chr25:16217228-16219237 chr25:16217228-16219237] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer1 plot danRer1] | ||
|- | |- | ||
| | | 159 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.5/ GCF_000002035.5] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.5/ GCF_000002035.5] | ||
| tbd | | tbd | ||
Line 1,873: | Line 1,873: | ||
| style='text-align:right'| 174 | | style='text-align:right'| 174 | ||
| style='text-align:right'| 105525 | | style='text-align:right'| 105525 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 17550 | | style='text-align:right'| 17550 | ||
| 484, 10, [http://genome-test. | | 484, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer10&position=chr5:1032421-1033398 chr5:1032421-1033398] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer10 plot danRer10] | ||
|- | |||
| 160 | |||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer11 danRer11] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.6/ GCF_000002035.6] | |||
| tbd | |||
| style='text-align:right'| 127 | |||
| style='text-align:right'| 124 | |||
| style='text-align:right'| 25120 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 12650 | |||
| 42, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer11&position=chr16:27147800-27147884 chr16:27147800-27147884] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer11 plot danRer11] | |||
|- | |- | ||
| | | 161 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer2 danRer2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,887: | Line 1,899: | ||
| style='text-align:right'| 58 | | style='text-align:right'| 58 | ||
| style='text-align:right'| 191859 | | style='text-align:right'| 191859 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 223764 | | style='text-align:right'| 223764 | ||
| 1000, 10, [http://genome-test. | | 1000, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer2&position=chr10:26174984-26176993 chr10:26174984-26176993] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer2 plot danRer2] | ||
|- | |- | ||
| | | 162 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer3 danRer3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,901: | Line 1,912: | ||
| style='text-align:right'| 58 | | style='text-align:right'| 58 | ||
| style='text-align:right'| 88143 | | style='text-align:right'| 88143 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 121196 | | style='text-align:right'| 121196 | ||
| 776, 10, [http://genome-test. | | 776, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer3&position=chrUn:112388525-112390086 chrUn:112388525-112390086] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer3 plot danRer3] | ||
|- | |- | ||
| | | 163 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer4 danRer4] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,915: | Line 1,925: | ||
| style='text-align:right'| 65.5 | | style='text-align:right'| 65.5 | ||
| style='text-align:right'| 121967 | | style='text-align:right'| 121967 | ||
| style='text-align:right'| 14 | | style='text-align:right'| 14 | ||
| style='text-align:right'| 135012 | | style='text-align:right'| 135012 | ||
| 705, 11, [http://genome-test. | | 705, 11, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer4&position=chr25:30060270-30061690 chr25:30060270-30061690] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer4 plot danRer4] | ||
|- | |- | ||
| | | 164 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer5 danRer5] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,929: | Line 1,938: | ||
| style='text-align:right'| 170 | | style='text-align:right'| 170 | ||
| style='text-align:right'| 288298 | | style='text-align:right'| 288298 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 155702 | | style='text-align:right'| 155702 | ||
| 73, 1, [http://genome-test. | | 73, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer5&position=chr21:35548773-35548919 chr21:35548773-35548919] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer5 plot danRer5] | ||
|- | |- | ||
| | | 165 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer6 danRer6] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,943: | Line 1,951: | ||
| style='text-align:right'| 133 | | style='text-align:right'| 133 | ||
| style='text-align:right'| 225674 | | style='text-align:right'| 225674 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 142101 | | style='text-align:right'| 142101 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer6&position=Zv8_scaffold431:54613-56712 Zv8_scaffold431:54613-56712] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer6 plot danRer6] | ||
|- | |- | ||
| | | 166 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.4/ GCF_000002035.4] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.4/ GCF_000002035.4] | ||
| tbd | | tbd | ||
Line 1,957: | Line 1,964: | ||
| style='text-align:right'| 164 | | style='text-align:right'| 164 | ||
| style='text-align:right'| 217595 | | style='text-align:right'| 217595 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 124500 | | style='text-align:right'| 124500 | ||
| 900, 100, [http://genome-test. | | 900, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=chr22:2241720-2243619 chr22:2241720-2243619] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=danRer7 plot danRer7] | ||
|- | |- | ||
| | | 167 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dasNov1 dasNov1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,971: | Line 1,977: | ||
| style='text-align:right'| 123 | | style='text-align:right'| 123 | ||
| style='text-align:right'| 12971 | | style='text-align:right'| 12971 | ||
| style='text-align:right'| 111 | | style='text-align:right'| 111 | ||
| style='text-align:right'| 31368 | | style='text-align:right'| 31368 | ||
| 681, 100, [http://genome-test. | | 681, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dasNov1&position=scaffold_3005:3743-5204 scaffold_3005:3743-5204] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dasNov1 plot dasNov1] | ||
|- | |- | ||
| | | 168 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 1,985: | Line 1,990: | ||
| style='text-align:right'| 136 | | style='text-align:right'| 136 | ||
| style='text-align:right'| 25865 | | style='text-align:right'| 25865 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 58752 | | style='text-align:right'| 58752 | ||
| 836, 100, [http://genome-test. | | 836, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dasNov2&position=scaffold_3394:70496-72267 scaffold_3394:70496-72267] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dasNov2 plot dasNov2] | ||
|- | |- | ||
| | | 169 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000208655.1/ GCF_000208655.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000208655.1/ GCF_000208655.1] | ||
| Celera Assembler v. 6.0; Atlas-Link; Atlas-Gap-Fill | | Celera Assembler v. 6.0; Atlas-Link; Atlas-Gap-Fill | ||
Line 1,999: | Line 2,003: | ||
| style='text-align:right'| 46 | | style='text-align:right'| 46 | ||
| style='text-align:right'| 16270 | | style='text-align:right'| 16270 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 94236 | | style='text-align:right'| 94236 | ||
| 677, 50, [http://genome-test. | | 677, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dasNov3&position=JH564516:24848-26251 JH564516:24848-26251] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dasNov3 plot dasNov3] | ||
|- | |- | ||
| | | 170 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dicLab1 dicLab1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000689215.1/ GCA_000689215.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000689215.1/ GCA_000689215.1] | ||
| tbd | | tbd | ||
Line 2,013: | Line 2,016: | ||
| style='text-align:right'| 423 | | style='text-align:right'| 423 | ||
| style='text-align:right'| 116519 | | style='text-align:right'| 116519 | ||
| style='text-align:right'| 203 | | style='text-align:right'| 203 | ||
| style='text-align:right'| 134149 | | style='text-align:right'| 134149 | ||
| 994, 20, [http://genome-test. | | 994, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dicLab1&position=HG916850:2956140-2958147 HG916850:2956140-2958147] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dicLab1 plot dicLab1] | ||
|- | |- | ||
| | | 171 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000151885.1/ GCA_000151885.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000151885.1/ GCA_000151885.1] | ||
| tbd | | tbd | ||
Line 2,027: | Line 2,029: | ||
| style='text-align:right'| 46 | | style='text-align:right'| 46 | ||
| style='text-align:right'| 46012 | | style='text-align:right'| 46012 | ||
| style='text-align:right'| 379 | | style='text-align:right'| 379 | ||
| style='text-align:right'| 102683 | | style='text-align:right'| 102683 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1&position=scaffold_2463:9467-11566 scaffold_2463:9467-11566] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dipOrd1 plot dipOrd1] | ||
|- | |||
| 172 | |||
| 2014 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dipOrd2 dipOrd2] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151885.1/ GCF_000151885.1] | |||
| AllPaths LG v. 41070; Atlas Link v. 2.0; Atlas GapFill v. 2.0 | |||
| style='text-align:right'| 3290 | |||
| style='text-align:right'| 64.5 | |||
| style='text-align:right'| 258868 | |||
| style='text-align:right'| 50 | |||
| style='text-align:right'| 821432 | |||
| 981, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dipOrd2&position=NW_012267268v1:6944272-6946283 NW_012267268v1:6944272-6946283] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dipOrd2 plot dipOrd2] | |||
|- | |- | ||
| | | 173 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,041: | Line 2,055: | ||
| style='text-align:right'| 175 | | style='text-align:right'| 175 | ||
| style='text-align:right'| 132528 | | style='text-align:right'| 132528 | ||
| style='text-align:right'| 2 | | style='text-align:right'| 2 | ||
| style='text-align:right'| 32073 | | style='text-align:right'| 32073 | ||
| 999, 1, [http://genome-test. | | 999, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dirImm1&position=nDi_2_2_scaf00035:47420-49418 nDi_2_2_scaf00035:47420-49418] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dirImm1 plot dirImm1] | ||
|- | |- | ||
| | | 174 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dm1 dm1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,055: | Line 2,068: | ||
| style='text-align:right'| 252 | | style='text-align:right'| 252 | ||
| style='text-align:right'| 2984 | | style='text-align:right'| 2984 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 1237 | | style='text-align:right'| 1237 | ||
| 604, 20, [http://genome-test. | | 604, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dm1&position=chrU:5250525-5251752 chrU:5250525-5251752] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dm1 plot dm1] | ||
|- | |- | ||
| | | 175 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dm2 dm2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,069: | Line 2,081: | ||
| style='text-align:right'| 362 | | style='text-align:right'| 362 | ||
| style='text-align:right'| 2818 | | style='text-align:right'| 2818 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 1217 | | style='text-align:right'| 1217 | ||
| 604, 20, [http://genome-test. | | 604, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dm2&position=chrU:5250525-5251752 chrU:5250525-5251752] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dm2 plot dm2] | ||
|- | |- | ||
| | | 176 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dm3 dm3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,083: | Line 2,094: | ||
| style='text-align:right'| 286 | | style='text-align:right'| 286 | ||
| style='text-align:right'| 4907 | | style='text-align:right'| 4907 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 423940 | | style='text-align:right'| 423940 | ||
| 276, 20, [http://genome-test. | | 276, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dm3&position=chrU:4943122-4943693 chrU:4943122-4943693] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dm3 plot dm3] | ||
|- | |- | ||
| | | 177 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dm6 dm6] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001215.4/ GCF_000001215.4] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001215.4/ GCF_000001215.4] | ||
| tbd | | tbd | ||
Line 2,097: | Line 2,107: | ||
| style='text-align:right'| 333 | | style='text-align:right'| 333 | ||
| style='text-align:right'| 4828 | | style='text-align:right'| 4828 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 1340 | | style='text-align:right'| 1340 | ||
| 276, 20, [http://genome-test. | | 276, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dm6&position=chrUn_DS483709v1:12934-13505 chrUn_DS483709v1:12934-13505] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dm6 plot dm6] | ||
|- | |- | ||
| | | 178 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dp2 dp2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,111: | Line 2,120: | ||
| style='text-align:right'| 64 | | style='text-align:right'| 64 | ||
| style='text-align:right'| 11633 | | style='text-align:right'| 11633 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 9049 | | style='text-align:right'| 9049 | ||
| 784, 10, [http://genome-test. | | 784, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dp2&position=Contig4969_Contig4496:202614-204191 Contig4969_Contig4496:202614-204191] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dp2 plot dp2] | ||
|- | |- | ||
| | | 179 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dp3 dp3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,125: | Line 2,133: | ||
| style='text-align:right'| 79.5 | | style='text-align:right'| 79.5 | ||
| style='text-align:right'| 17354 | | style='text-align:right'| 17354 | ||
| style='text-align:right'| 79.5 | | style='text-align:right'| 79.5 | ||
| style='text-align:right'| 14988 | | style='text-align:right'| 14988 | ||
| 485, 11, [http://genome-test. | | 485, 11, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dp3&position=chrU:7044759-7045739 chrU:7044759-7045739] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dp3 plot dp3] | ||
|- | |- | ||
| | | 180 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dp4 dp4] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,139: | Line 2,146: | ||
| style='text-align:right'| 81 | | style='text-align:right'| 81 | ||
| style='text-align:right'| 19720 | | style='text-align:right'| 19720 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 18528 | | style='text-align:right'| 18528 | ||
| 798, 50, [http://genome-test. | | 798, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=dp4&position=chrXL_group1e:8376310-8377955 chrXL_group1e:8376310-8377955] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=dp4 plot dp4] | ||
|- | |- | ||
| | | 181 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droAlb1 droAlb1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000298335.1/ GCA_000298335.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000298335.1/ GCA_000298335.1] | ||
| SOAPdenovo v. 1.04 | | SOAPdenovo v. 1.04 | ||
Line 2,153: | Line 2,159: | ||
| style='text-align:right'| 30 | | style='text-align:right'| 30 | ||
| style='text-align:right'| 131320 | | style='text-align:right'| 131320 | ||
| style='text-align:right'| 22 | | style='text-align:right'| 22 | ||
| style='text-align:right'| 152454 | | style='text-align:right'| 152454 | ||
| 76, 1, [http://genome-test. | | 76, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droAlb1&position=JH853217:889-1041 JH853217:889-1041] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droAlb1 plot droAlb1] | ||
|- | |- | ||
| | | 182 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droAna1 droAna1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,167: | Line 2,172: | ||
| style='text-align:right'| 252 | | style='text-align:right'| 252 | ||
| style='text-align:right'| 28853 | | style='text-align:right'| 28853 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 10300 | | style='text-align:right'| 10300 | ||
| 943, 100, [http://genome-test. | | 943, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droAna1&position=2448822:95133-97118 2448822:95133-97118] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droAna1 plot droAna1] | ||
|- | |- | ||
| | | 183 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droAna2 droAna2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,181: | Line 2,185: | ||
| style='text-align:right'| 160 | | style='text-align:right'| 160 | ||
| style='text-align:right'| 7905 | | style='text-align:right'| 7905 | ||
| style='text-align:right'| 701 | | style='text-align:right'| 701 | ||
| style='text-align:right'| 72786 | | style='text-align:right'| 72786 | ||
| 791, 25, [http://genome-test. | | 791, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droAna2&position=scaffold_13266:420335-421941 scaffold_13266:420335-421941] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droAna2 plot droAna2] | ||
|- | |- | ||
| | | 184 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005115.1/ GCF_000005115.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005115.1/ GCF_000005115.1] | ||
| tbd | | tbd | ||
Line 2,195: | Line 2,198: | ||
| style='text-align:right'| 143 | | style='text-align:right'| 143 | ||
| style='text-align:right'| 8663 | | style='text-align:right'| 8663 | ||
| style='text-align:right'| 671 | | style='text-align:right'| 671 | ||
| style='text-align:right'| 75001 | | style='text-align:right'| 75001 | ||
| 707, 25, [http://genome-test. | | 707, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droAna3&position=scaffold_13230:483470-484908 scaffold_13230:483470-484908] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droAna3 plot droAna3] | ||
|- | |- | ||
| | | 185 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droBia2 droBia2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000233415.2/ GCA_000233415.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000233415.2/ GCA_000233415.2] | ||
| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | ||
Line 2,209: | Line 2,211: | ||
| style='text-align:right'| 116.5 | | style='text-align:right'| 116.5 | ||
| style='text-align:right'| 2103 | | style='text-align:right'| 2103 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 294 | | style='text-align:right'| 294 | ||
| 447, 20, [http://genome-test. | | 447, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droBia2&position=KB462730:148150-149063 KB462730:148150-149063] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droBia2 plot droBia2] | ||
|- | |- | ||
| | | 186 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droBip2 droBip2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236285.2/ GCA_000236285.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236285.2/ GCA_000236285.2] | ||
| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0 | | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0 | ||
Line 2,223: | Line 2,224: | ||
| style='text-align:right'| 103.5 | | style='text-align:right'| 103.5 | ||
| style='text-align:right'| 3925 | | style='text-align:right'| 3925 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 520 | | style='text-align:right'| 520 | ||
| 409, 20, [http://genome-test. | | 409, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droBip2&position=KB464242:790791-791628 KB464242:790791-791628] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droBip2 plot droBip2] | ||
|- | |- | ||
| | | 187 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droEle2 droEle2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224195.2/ GCA_000224195.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224195.2/ GCA_000224195.2] | ||
| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | ||
Line 2,237: | Line 2,237: | ||
| style='text-align:right'| 205 | | style='text-align:right'| 205 | ||
| style='text-align:right'| 4879 | | style='text-align:right'| 4879 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 440 | | style='text-align:right'| 440 | ||
| 480, 20, [http://genome-test. | | 480, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droEle2&position=KB458480:1051747-1052726 KB458480:1051747-1052726] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droEle2 plot droEle2] | ||
|- | |- | ||
| | | 188 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droEre1 droEre1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,251: | Line 2,250: | ||
| style='text-align:right'| 86.5 | | style='text-align:right'| 86.5 | ||
| style='text-align:right'| 1545 | | style='text-align:right'| 1545 | ||
| style='text-align:right'| 731 | | style='text-align:right'| 731 | ||
| style='text-align:right'| 6855 | | style='text-align:right'| 6855 | ||
| 773, 25, [http://genome-test. | | 773, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droEre1&position=scaffold_4784:23686196-23687766 scaffold_4784:23686196-23687766] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droEre1 plot droEre1] | ||
|- | |- | ||
| | | 189 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droEre2 droEre2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005135.1/ GCF_000005135.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005135.1/ GCF_000005135.1] | ||
| tbd | | tbd | ||
Line 2,265: | Line 2,263: | ||
| style='text-align:right'| 221 | | style='text-align:right'| 221 | ||
| style='text-align:right'| 4384 | | style='text-align:right'| 4384 | ||
| style='text-align:right'| 239 | | style='text-align:right'| 239 | ||
| style='text-align:right'| 7433 | | style='text-align:right'| 7433 | ||
| 763, 25, [http://genome-test. | | 763, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droEre2&position=scaffold_4784:18133045-18134595 scaffold_4784:18133045-18134595] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droEre2 plot droEre2] | ||
|- | |- | ||
| | | 190 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droEug2 droEug2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236325.2/ GCA_000236325.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236325.2/ GCA_000236325.2] | ||
| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | ||
Line 2,279: | Line 2,276: | ||
| style='text-align:right'| 52 | | style='text-align:right'| 52 | ||
| style='text-align:right'| 1627 | | style='text-align:right'| 1627 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 237 | | style='text-align:right'| 237 | ||
| 72, 1, [http://genome-test. | | 72, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droEug2&position=AFPQ02002129:815-959 AFPQ02002129:815-959] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droEug2 plot droEug2] | ||
|- | |- | ||
| | | 191 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droFic2 droFic2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000220665.2/ GCA_000220665.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000220665.2/ GCA_000220665.2] | ||
| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | ||
Line 2,293: | Line 2,289: | ||
| style='text-align:right'| 352 | | style='text-align:right'| 352 | ||
| style='text-align:right'| 3277 | | style='text-align:right'| 3277 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 220 | | style='text-align:right'| 220 | ||
| 424, 20, [http://genome-test. | | 424, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droFic2&position=KB457328:1582-2449 KB457328:1582-2449] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droFic2 plot droFic2] | ||
|- | |- | ||
| | | 192 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droGri1 droGri1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,307: | Line 2,302: | ||
| style='text-align:right'| 76 | | style='text-align:right'| 76 | ||
| style='text-align:right'| 2908 | | style='text-align:right'| 2908 | ||
| style='text-align:right'| 444 | | style='text-align:right'| 444 | ||
| style='text-align:right'| 11143 | | style='text-align:right'| 11143 | ||
| 734, 312, [http://genome-test. | | 734, 312, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droGri1&position=scaffold_24659:1579-3358 scaffold_24659:1579-3358] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droGri1 plot droGri1] | ||
|- | |- | ||
| | | 193 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droGri2 droGri2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005155.2/ GCF_000005155.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005155.2/ GCF_000005155.2] | ||
| tbd | | tbd | ||
Line 2,321: | Line 2,315: | ||
| style='text-align:right'| 60.5 | | style='text-align:right'| 60.5 | ||
| style='text-align:right'| 5904 | | style='text-align:right'| 5904 | ||
| style='text-align:right'| 430.5 | | style='text-align:right'| 430.5 | ||
| style='text-align:right'| 52107 | | style='text-align:right'| 52107 | ||
| 774, 25, [http://genome-test. | | 774, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droGri2&position=scaffold_15245:16809148-16810720 scaffold_15245:16809148-16810720] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droGri2 plot droGri2] | ||
|- | |- | ||
| | | 194 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droKik2 droKik2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224215.2/ GCA_000224215.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224215.2/ GCA_000224215.2] | ||
| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | ||
Line 2,335: | Line 2,328: | ||
| style='text-align:right'| 102 | | style='text-align:right'| 102 | ||
| style='text-align:right'| 1812 | | style='text-align:right'| 1812 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 1721 | | style='text-align:right'| 1721 | ||
| 361, 20, [http://genome-test. | | 361, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droKik2&position=KB458730:24774-25515 KB458730:24774-25515] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droKik2 plot droKik2] | ||
|- | |- | ||
| | | 195 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droMir2 droMir2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000269505.2/ GCA_000269505.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000269505.2/ GCA_000269505.2] | ||
| Newbler v. 2.6 | | Newbler v. 2.6 | ||
Line 2,349: | Line 2,341: | ||
| style='text-align:right'| 72 | | style='text-align:right'| 72 | ||
| style='text-align:right'| 16465 | | style='text-align:right'| 16465 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 57520 | | style='text-align:right'| 57520 | ||
| 1000, 10, [http://genome-test. | | 1000, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droMir2&position=chr2:9770771-9772780 chr2:9770771-9772780] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droMir2 plot droMir2] | ||
|- | |- | ||
| | | 197 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droMoj2 droMoj2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,363: | Line 2,354: | ||
| style='text-align:right'| 219.5 | | style='text-align:right'| 219.5 | ||
| style='text-align:right'| 7748 | | style='text-align:right'| 7748 | ||
| style='text-align:right'| 366.5 | | style='text-align:right'| 366.5 | ||
| style='text-align:right'| 30847 | | style='text-align:right'| 30847 | ||
| 969, 25, [http://genome-test. | | 969, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droMoj2&position=scaffold_6496:4573125-4575087 scaffold_6496:4573125-4575087] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droMoj2 plot droMoj2] | ||
|- | |- | ||
| | | 198 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droMoj3 droMoj3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005175.2/ GCF_000005175.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005175.2/ GCF_000005175.2] | ||
| tbd | | tbd | ||
Line 2,377: | Line 2,367: | ||
| style='text-align:right'| 343 | | style='text-align:right'| 343 | ||
| style='text-align:right'| 6118 | | style='text-align:right'| 6118 | ||
| style='text-align:right'| 426 | | style='text-align:right'| 426 | ||
| style='text-align:right'| 29359 | | style='text-align:right'| 29359 | ||
| 859, 25, [http://genome-test. | | 859, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droMoj3&position=scaffold_6496:14181729-14183471 scaffold_6496:14181729-14183471] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droMoj3 plot droMoj3] | ||
|- | |- | ||
| | | 199 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005195.2/ GCF_000005195.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005195.2/ GCF_000005195.2] | ||
| tbd | | tbd | ||
Line 2,391: | Line 2,380: | ||
| style='text-align:right'| 402 | | style='text-align:right'| 402 | ||
| style='text-align:right'| 10502 | | style='text-align:right'| 10502 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 10914 | | style='text-align:right'| 10914 | ||
| 937, 100, [http://genome-test. | | 937, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droPer1&position=super_12:105769-107742 super_12:105769-107742] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droPer1 plot droPer1] | ||
|- | |- | ||
| | | 200 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droPse3 droPse3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001765.3/ GCF_000001765.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001765.3/ GCF_000001765.3] | ||
| PBJelly v. 12.8.2; Atlas genome assembly | | PBJelly v. 12.8.2; Atlas genome assembly | ||
Line 2,405: | Line 2,393: | ||
| style='text-align:right'| 51 | | style='text-align:right'| 51 | ||
| style='text-align:right'| 1309 | | style='text-align:right'| 1309 | ||
| style='text-align:right'| 86 | | style='text-align:right'| 86 | ||
| style='text-align:right'| 3307 | | style='text-align:right'| 3307 | ||
| 718, 50, [http://genome-test. | | 718, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droPse3&position=chr3:13529933-13531418 chr3:13529933-13531418] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droPse3 plot droPse3] | ||
|- | |- | ||
| | | 201 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droRho2 droRho2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236305.2/ GCA_000236305.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236305.2/ GCA_000236305.2] | ||
| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | ||
Line 2,419: | Line 2,406: | ||
| style='text-align:right'| 167 | | style='text-align:right'| 167 | ||
| style='text-align:right'| 7228 | | style='text-align:right'| 7228 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 1286 | | style='text-align:right'| 1286 | ||
| 454, 20, [http://genome-test. | | 454, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droRho2&position=KB451407:7018-7945 KB451407:7018-7945] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droRho2 plot droRho2] | ||
|- | |- | ||
| | | 202 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droSec1 droSec1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000005215.1/ GCA_000005215.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000005215.1/ GCA_000005215.1] | ||
| tbd | | tbd | ||
Line 2,433: | Line 2,419: | ||
| style='text-align:right'| 399 | | style='text-align:right'| 399 | ||
| style='text-align:right'| 6822 | | style='text-align:right'| 6822 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 5318 | | style='text-align:right'| 5318 | ||
| 765, 100, [http://genome-test. | | 765, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droSec1&position=super_59:77146-78775 super_59:77146-78775] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droSec1 plot droSec1] | ||
|- | |- | ||
| | | 203 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droSim1 droSim1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,447: | Line 2,432: | ||
| style='text-align:right'| 106 | | style='text-align:right'| 106 | ||
| style='text-align:right'| 23001 | | style='text-align:right'| 23001 | ||
| style='text-align:right'| 298 | | style='text-align:right'| 298 | ||
| style='text-align:right'| 40703 | | style='text-align:right'| 40703 | ||
| 801, 10, [http://genome-test. | | 801, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droSim1&position=chr2L:4623692-4625303 chr2L:4623692-4625303] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droSim1 plot droSim1] | ||
|- | |- | ||
| | | 204 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droSim2 droSim2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000754195.2/ GCF_000754195.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000754195.2/ GCF_000754195.2] | ||
| Velvet v. 1.1.04 | | Velvet v. 1.1.04 | ||
Line 2,461: | Line 2,445: | ||
| style='text-align:right'| 58 | | style='text-align:right'| 58 | ||
| style='text-align:right'| 5999 | | style='text-align:right'| 5999 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 1818 | | style='text-align:right'| 1818 | ||
| 359, 8, [http://genome-test. | | 359, 8, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droSim2&position=chr2R:7425888-7426613 chr2R:7425888-7426613] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droSim2 plot droSim2] | ||
|- | |- | ||
| | | 205 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droSuz1 droSuz1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000472105.1/ GCA_000472105.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000472105.1/ GCA_000472105.1] | ||
| SOAPdenovo v. 2 | | SOAPdenovo v. 2 | ||
Line 2,475: | Line 2,458: | ||
| style='text-align:right'| 185 | | style='text-align:right'| 185 | ||
| style='text-align:right'| 16489 | | style='text-align:right'| 16489 | ||
| style='text-align:right'| 1565 | | style='text-align:right'| 1565 | ||
| style='text-align:right'| 196054 | | style='text-align:right'| 196054 | ||
| 364, 76, [http://genome-test. | | 364, 76, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droSuz1&position=KI420423:11753-12556 KI420423:11753-12556] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droSuz1 plot droSuz1] | ||
|- | |- | ||
| | | 206 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droTak2 droTak2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224235.2/ GCA_000224235.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224235.2/ GCA_000224235.2] | ||
| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | ||
Line 2,489: | Line 2,471: | ||
| style='text-align:right'| 102 | | style='text-align:right'| 102 | ||
| style='text-align:right'| 2070 | | style='text-align:right'| 2070 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 260 | | style='text-align:right'| 260 | ||
| 472, 20, [http://genome-test. | | 472, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droTak2&position=KB461286:709634-710597 KB461286:709634-710597] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droTak2 plot droTak2] | ||
|- | |- | ||
| | | 207 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droVir1 droVir1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,503: | Line 2,484: | ||
| style='text-align:right'| 328.5 | | style='text-align:right'| 328.5 | ||
| style='text-align:right'| 15839 | | style='text-align:right'| 15839 | ||
| style='text-align:right'| 25 | | style='text-align:right'| 25 | ||
| style='text-align:right'| 16648 | | style='text-align:right'| 16648 | ||
| 698, 25, [http://genome-test. | | 698, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droVir1&position=scaffold_10:2740496-2741916 scaffold_10:2740496-2741916] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droVir1 plot droVir1] | ||
|- | |- | ||
| | | 208 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droVir2 droVir2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,517: | Line 2,497: | ||
| style='text-align:right'| 232 | | style='text-align:right'| 232 | ||
| style='text-align:right'| 3421 | | style='text-align:right'| 3421 | ||
| style='text-align:right'| 1415 | | style='text-align:right'| 1415 | ||
| style='text-align:right'| 46365 | | style='text-align:right'| 46365 | ||
| 503, 25, [http://genome-test. | | 503, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droVir2&position=scaffold_13324:149342-150372 scaffold_13324:149342-150372] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droVir2 plot droVir2] | ||
|- | |- | ||
| | | 209 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005245.1/ GCF_000005245.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005245.1/ GCF_000005245.1] | ||
| tbd | | tbd | ||
Line 2,531: | Line 2,510: | ||
| style='text-align:right'| 341 | | style='text-align:right'| 341 | ||
| style='text-align:right'| 4206 | | style='text-align:right'| 4206 | ||
| style='text-align:right'| 1536.5 | | style='text-align:right'| 1536.5 | ||
| style='text-align:right'| 45200 | | style='text-align:right'| 45200 | ||
| 423, 25, [http://genome-test. | | 423, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droVir3&position=scaffold_13324:149231-150101 scaffold_13324:149231-150101] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droVir3 plot droVir3] | ||
|- | |- | ||
| | | 210 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droWil1 droWil1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005925.1/ GCF_000005925.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005925.1/ GCF_000005925.1] | ||
| tbd | | tbd | ||
Line 2,545: | Line 2,523: | ||
| style='text-align:right'| 248 | | style='text-align:right'| 248 | ||
| style='text-align:right'| 8712 | | style='text-align:right'| 8712 | ||
| style='text-align:right'| 1330 | | style='text-align:right'| 1330 | ||
| style='text-align:right'| 51159 | | style='text-align:right'| 51159 | ||
| 759, 50, [http://genome-test. | | 759, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droWil1&position=scaffold_181150:697726-699293 scaffold_181150:697726-699293] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droWil1 plot droWil1] | ||
|- | |- | ||
| | | 211 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droWil2 droWil2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005925.1/ GCF_000005925.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005925.1/ GCF_000005925.1] | ||
| tbd | | tbd | ||
Line 2,559: | Line 2,536: | ||
| style='text-align:right'| 248 | | style='text-align:right'| 248 | ||
| style='text-align:right'| 8712 | | style='text-align:right'| 8712 | ||
| style='text-align:right'| 1330 | | style='text-align:right'| 1330 | ||
| style='text-align:right'| 51159 | | style='text-align:right'| 51159 | ||
| 759, 50, [http://genome-test. | | 759, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droWil2&position=CH964291:697726-699293 CH964291:697726-699293] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droWil2 plot droWil2] | ||
|- | |- | ||
| | | 212 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droYak1 droYak1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,573: | Line 2,549: | ||
| style='text-align:right'| 340 | | style='text-align:right'| 340 | ||
| style='text-align:right'| 25549 | | style='text-align:right'| 25549 | ||
| style='text-align:right'| 250 | | style='text-align:right'| 250 | ||
| style='text-align:right'| 24358 | | style='text-align:right'| 24358 | ||
| 955, 50, [http://genome-test. | | 955, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droYak1&position=chrU:40768288-40770247 chrU:40768288-40770247] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droYak1 plot droYak1] | ||
|- | |- | ||
| | | 213 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droYak2 droYak2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,587: | Line 2,562: | ||
| style='text-align:right'| 170 | | style='text-align:right'| 170 | ||
| style='text-align:right'| 26922 | | style='text-align:right'| 26922 | ||
| style='text-align:right'| 54 | | style='text-align:right'| 54 | ||
| style='text-align:right'| 37713 | | style='text-align:right'| 37713 | ||
| 684, 10, [http://genome-test. | | 684, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droYak2&position=chr2L:22155365-22156742 chr2L:22155365-22156742] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droYak2 plot droYak2] | ||
|- | |- | ||
| | | 214 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droYak3 droYak3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005975.2/ GCF_000005975.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005975.2/ GCF_000005975.2] | ||
| tbd | | tbd | ||
Line 2,601: | Line 2,575: | ||
| style='text-align:right'| 143 | | style='text-align:right'| 143 | ||
| style='text-align:right'| 20479 | | style='text-align:right'| 20479 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 23713 | | style='text-align:right'| 23713 | ||
| 684, 10, [http://genome-test. | | 684, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droYak3&position=chr2L:22155365-22156742 chr2L:22155365-22156742] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=droYak3 plot droYak3] | ||
|- | |- | ||
| | | 217 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,615: | Line 2,588: | ||
| style='text-align:right'| 83 | | style='text-align:right'| 83 | ||
| style='text-align:right'| 17114 | | style='text-align:right'| 17114 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 22024 | | style='text-align:right'| 22024 | ||
| 805, 100, [http://genome-test. | | 805, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=echTel1&position=scaffold_272928:13200-14909 scaffold_272928:13200-14909] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=echTel1 plot echTel1] | ||
|- | |- | ||
| | | 218 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000313985.1/ GCF_000313985.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000313985.1/ GCF_000313985.1] | ||
| ALLPATHS v. R37599 | | ALLPATHS v. R37599 | ||
Line 2,629: | Line 2,601: | ||
| style='text-align:right'| 93 | | style='text-align:right'| 93 | ||
| style='text-align:right'| 620444 | | style='text-align:right'| 620444 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 656358 | | style='text-align:right'| 656358 | ||
| 998, 100, [http://genome-test. | | 998, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=echTel2&position=JH980317:1376657-1378752 JH980317:1376657-1378752] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=echTel2 plot echTel2] | ||
|- | |- | ||
| | | 219 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=egrGar1 egrGar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687185.1/ GCF_000687185.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687185.1/ GCF_000687185.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 2,643: | Line 2,614: | ||
| style='text-align:right'| 213.5 | | style='text-align:right'| 213.5 | ||
| style='text-align:right'| 33121 | | style='text-align:right'| 33121 | ||
| style='text-align:right'| 1093.5 | | style='text-align:right'| 1093.5 | ||
| style='text-align:right'| 229589 | | style='text-align:right'| 229589 | ||
| 998, 134, [http://genome-test. | | 998, 134, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=egrGar1&position=KK502338:445846-447975 KK502338:445846-447975] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=egrGar1 plot egrGar1] | ||
|- | |- | ||
| | | 220 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eidHel1 eidHel1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000465285.1/ GCA_000465285.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000465285.1/ GCA_000465285.1] | ||
| CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | ||
Line 2,657: | Line 2,627: | ||
| style='text-align:right'| 45 | | style='text-align:right'| 45 | ||
| style='text-align:right'| 1294 | | style='text-align:right'| 1294 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 186 | | style='text-align:right'| 186 | ||
| 68, 1, [http://genome-test. | | 68, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eidHel1&position=KE769079:2720-2856 KE769079:2720-2856] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=eidHel1 plot eidHel1] | ||
|- | |- | ||
| | | 221 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000299155.1/ GCF_000299155.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000299155.1/ GCF_000299155.1] | ||
| allpaths v. R42301 HAPLOIDIFY=True | | allpaths v. R42301 HAPLOIDIFY=True | ||
Line 2,671: | Line 2,640: | ||
| style='text-align:right'| 71 | | style='text-align:right'| 71 | ||
| style='text-align:right'| 141553 | | style='text-align:right'| 141553 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 311199 | | style='text-align:right'| 311199 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1&position=JH947463:2106240-2108339 JH947463:2106240-2108339] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=eleEdw1 plot eleEdw1] | ||
|- | |- | ||
| | | 222 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000308155.1/ GCF_000308155.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000308155.1/ GCF_000308155.1] | ||
| ALLPATHS v. R40371 | | ALLPATHS v. R40371 | ||
Line 2,685: | Line 2,653: | ||
| style='text-align:right'| 75 | | style='text-align:right'| 75 | ||
| style='text-align:right'| 188916 | | style='text-align:right'| 188916 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 378407 | | style='text-align:right'| 378407 | ||
| 988, 100, [http://genome-test. | | 988, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eptFus1&position=JH977647:11513546-11515621 JH977647:11513546-11515621] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=eptFus1 plot eptFus1] | ||
|- | |- | ||
| | | 223 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=equCab1 equCab1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,699: | Line 2,666: | ||
| style='text-align:right'| 457 | | style='text-align:right'| 457 | ||
| style='text-align:right'| 5982 | | style='text-align:right'| 5982 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 6200 | | style='text-align:right'| 6200 | ||
| 715, 100, [http://genome-test. | | 715, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=equCab1&position=chr2:10720193-10721722 chr2:10720193-10721722] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=equCab1 plot equCab1] | ||
|- | |- | ||
| | | 224 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,713: | Line 2,679: | ||
| style='text-align:right'| 160.5 | | style='text-align:right'| 160.5 | ||
| style='text-align:right'| 610 | | style='text-align:right'| 610 | ||
| style='text-align:right'| 1909 | | style='text-align:right'| 1909 | ||
| style='text-align:right'| 18507 | | style='text-align:right'| 18507 | ||
| 258, 295, [http://genome-test. | | 258, 295, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=equCab2&position=chr22:17653073-17653883 chr22:17653073-17653883] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=equCab2 plot equCab2] | ||
|- | |- | ||
| | | 225 | ||
| 2018 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=equCab3 equCab3] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_002863925.1/ GCF_002863925.1] | |||
| Celera Assembler v. 2017; HiRise v. 2017 | |||
| style='text-align:right'| 41 | |||
| style='text-align:right'| 666 | |||
| style='text-align:right'| 24283 | |||
| style='text-align:right'| 1000 | |||
| style='text-align:right'| 38458 | |||
| 949, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=equCab3&position=chr10:36118300-36120217 chr10:36118300-36120217] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=equCab3 plot equCab3] | |||
|- | |||
| 226 | |||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=equPrz1 equPrz1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000696695.1/ GCA_000696695.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000696695.1/ GCA_000696695.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 2,727: | Line 2,705: | ||
| style='text-align:right'| 49 | | style='text-align:right'| 49 | ||
| style='text-align:right'| 5163 | | style='text-align:right'| 5163 | ||
| style='text-align:right'| 49 | | style='text-align:right'| 49 | ||
| style='text-align:right'| 12408 | | style='text-align:right'| 12408 | ||
| 78, 11, [http://genome-test. | | 78, 11, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=equPrz1&position=KK955445:38997-39163 KK955445:38997-39163] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=equPrz1 plot equPrz1] | ||
|- | |- | ||
| | | 227 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,741: | Line 2,718: | ||
| style='text-align:right'| 435 | | style='text-align:right'| 435 | ||
| style='text-align:right'| 146738 | | style='text-align:right'| 146738 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 209198 | | style='text-align:right'| 209198 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eriEur1&position=scaffold_366352:52823-54922 scaffold_366352:52823-54922] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=eriEur1 plot eriEur1] | ||
|- | |- | ||
| | | 228 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000296755.1/ GCF_000296755.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000296755.1/ GCF_000296755.1] | ||
| allpaths v. R41008 | | allpaths v. R41008 | ||
Line 2,755: | Line 2,731: | ||
| style='text-align:right'| 70 | | style='text-align:right'| 70 | ||
| style='text-align:right'| 265454 | | style='text-align:right'| 265454 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 1205265 | | style='text-align:right'| 1205265 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eriEur2&position=JH835375:3514396-3516495 JH835375:3514396-3516495] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=eriEur2 plot eriEur2] | ||
|- | |- | ||
| | | 229 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1 esoLuc1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000721915.1/ GCA_000721915.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000721915.1/ GCA_000721915.1] | ||
| AllPaths v. 43500 | | AllPaths v. 43500 | ||
Line 2,769: | Line 2,744: | ||
| style='text-align:right'| 81 | | style='text-align:right'| 81 | ||
| style='text-align:right'| 734131 | | style='text-align:right'| 734131 | ||
| style='text-align:right'| 15 | | style='text-align:right'| 15 | ||
| style='text-align:right'| 1227519 | | style='text-align:right'| 1227519 | ||
| 950, 10, [http://genome-test. | | 950, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1&position=LG19:14032217-14034126 LG19:14032217-14034126] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=esoLuc1 plot esoLuc1] | ||
|- | |||
| 231 | |||
| 2015 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eulFla1 eulFla1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 29206 | |||
| style='text-align:right'| 139 | |||
| style='text-align:right'| 4756877 | |||
| style='text-align:right'| 1 | |||
| style='text-align:right'| 60241 | |||
| 986, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eulFla1&position=LGHW01004502v1:47323-49295 LGHW01004502v1:47323-49295] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=eulFla1 plot eulFla1] | |||
|- | |||
| 232 | |||
| 2015 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eulMac1 eulMac1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 41489 | |||
| style='text-align:right'| 62 | |||
| style='text-align:right'| 3147719 | |||
| style='text-align:right'| 53 | |||
| style='text-align:right'| 2639442 | |||
| 393, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eulMac1&position=LGHX01000676v1:768695-769481 LGHX01000676v1:768695-769481] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=eulMac1 plot eulMac1] | |||
|- | |- | ||
| | | 233 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eurHel1 eurHel1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690775.1/ GCF_000690775.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690775.1/ GCF_000690775.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 2,783: | Line 2,783: | ||
| style='text-align:right'| 89.5 | | style='text-align:right'| 89.5 | ||
| style='text-align:right'| 179 | | style='text-align:right'| 179 | ||
| style='text-align:right'| 436 | | style='text-align:right'| 436 | ||
| style='text-align:right'| 872 | | style='text-align:right'| 872 | ||
| 113, 451, [http://genome-test. | | 113, 451, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eurHel1&position=KK569808:53808-54484 KK569808:53808-54484] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=eurHel1 plot eurHel1] | ||
|- | |- | ||
| | | 235 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000337975.1/ GCF_000337975.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000337975.1/ GCF_000337975.1] | ||
| SOAPdenovo v. 1.4 | | SOAPdenovo v. 1.4 | ||
Line 2,797: | Line 2,796: | ||
| style='text-align:right'| 206 | | style='text-align:right'| 206 | ||
| style='text-align:right'| 7614 | | style='text-align:right'| 7614 | ||
| style='text-align:right'| 685 | | style='text-align:right'| 685 | ||
| style='text-align:right'| 35918 | | style='text-align:right'| 35918 | ||
| 51, 10, [http://genome-test. | | 51, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=falChe1&position=KB397780:7020361-7020472 KB397780:7020361-7020472] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=falChe1 plot falChe1] | ||
|- | |- | ||
| | | 236 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000337955.1/ GCF_000337955.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000337955.1/ GCF_000337955.1] | ||
| SOAPdenovo v. 1.4 | | SOAPdenovo v. 1.4 | ||
Line 2,811: | Line 2,809: | ||
| style='text-align:right'| 48.5 | | style='text-align:right'| 48.5 | ||
| style='text-align:right'| 530 | | style='text-align:right'| 530 | ||
| style='text-align:right'| 631.5 | | style='text-align:right'| 631.5 | ||
| style='text-align:right'| 4836 | | style='text-align:right'| 4836 | ||
| 36, 10, [http://genome-test. | | 36, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=falPer1&position=KB391040:3398436-3398517 KB391040:3398436-3398517] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=falPer1 plot falPer1] | ||
|- | |- | ||
| | | 237 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| felCat1 | | style='text-align:center;'| felCat1 | ||
Line 2,825: | Line 2,822: | ||
| style='text-align:right'| 353 | | style='text-align:right'| 353 | ||
| style='text-align:right'| 504058 | | style='text-align:right'| 504058 | ||
| style='text-align:right'| 874 | | style='text-align:right'| 874 | ||
| style='text-align:right'| 2708782 | | style='text-align:right'| 2708782 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat1&position=scaffold_217423:45453-47552 scaffold_217423:45453-47552] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=felCat1 plot felCat1] | ||
|- | |- | ||
| | | 238 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat3 felCat3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,839: | Line 2,835: | ||
| style='text-align:right'| 353 | | style='text-align:right'| 353 | ||
| style='text-align:right'| 504058 | | style='text-align:right'| 504058 | ||
| style='text-align:right'| 874 | | style='text-align:right'| 874 | ||
| style='text-align:right'| 2708782 | | style='text-align:right'| 2708782 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat3&position=scaffold_217423:45453-47552 scaffold_217423:45453-47552] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=felCat3 plot felCat3] | ||
|- | |- | ||
| | | 239 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000003115.1/ GCA_000003115.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000003115.1/ GCA_000003115.1] | ||
| tbd | | tbd | ||
Line 2,853: | Line 2,848: | ||
| style='text-align:right'| 503 | | style='text-align:right'| 503 | ||
| style='text-align:right'| 4582767 | | style='text-align:right'| 4582767 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 9398414 | | style='text-align:right'| 9398414 | ||
| 1000, 10, [http://genome-test. | | 1000, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat4&position=chrA2:8725380-8727389 chrA2:8725380-8727389] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=felCat4 plot felCat4] | ||
|- | |- | ||
| | | 240 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181335.1/ GCF_000181335.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181335.1/ GCF_000181335.1] | ||
| Celera Assembler v. 6.1 | | Celera Assembler v. 6.1 | ||
Line 2,867: | Line 2,861: | ||
| style='text-align:right'| 72 | | style='text-align:right'| 72 | ||
| style='text-align:right'| 6437 | | style='text-align:right'| 6437 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 100569 | | style='text-align:right'| 100569 | ||
| 488, 20, [http://genome-test. | | 488, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat5&position=chrB2:22462351-22463346 chrB2:22462351-22463346] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=felCat5 plot felCat5] | ||
|- | |- | ||
| | | 241 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181335.2/ GCF_000181335.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181335.2/ GCF_000181335.2] | ||
| CABOG v. 6.2; MaSuRCA assembler v. 8.0; GAA v. 1.0 | | CABOG v. 6.2; MaSuRCA assembler v. 8.0; GAA v. 1.0 | ||
Line 2,881: | Line 2,874: | ||
| style='text-align:right'| 55 | | style='text-align:right'| 55 | ||
| style='text-align:right'| 50300 | | style='text-align:right'| 50300 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 89447 | | style='text-align:right'| 89447 | ||
| 895, 14, [http://genome-test. | | 895, 14, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat8&position=chrB3:27250577-27252380 chrB3:27250577-27252380] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=felCat8 plot felCat8] | ||
|- | |- | ||
| | | 243 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ficAlb1 ficAlb1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000247815.1/ GCF_000247815.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000247815.1/ GCF_000247815.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 2,895: | Line 2,887: | ||
| style='text-align:right'| 77 | | style='text-align:right'| 77 | ||
| style='text-align:right'| 75592 | | style='text-align:right'| 75592 | ||
| style='text-align:right'| 40.5 | | style='text-align:right'| 40.5 | ||
| style='text-align:right'| 206854 | | style='text-align:right'| 206854 | ||
| 982, 1, [http://genome-test. | | 982, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ficAlb1&position=chr7:28154426-28156390 chr7:28154426-28156390] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ficAlb1 plot ficAlb1] | ||
|- | |- | ||
| | | 244 | ||
| 2013 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ficAlb2 ficAlb2] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000247815.1/ GCF_000247815.1] | |||
| SOAPdenovo v. 1.05 | |||
| style='text-align:right'| 632 | |||
| style='text-align:right'| 77 | |||
| style='text-align:right'| 75592 | |||
| style='text-align:right'| 40.5 | |||
| style='text-align:right'| 206854 | |||
| 982, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ficAlb2&position=chr7:28154426-28156390 chr7:28154426-28156390] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ficAlb2 plot ficAlb2] | |||
|- | |||
| 245 | |||
| 2002 | | 2002 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fr1 fr1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,909: | Line 2,913: | ||
| style='text-align:right'| 155.5 | | style='text-align:right'| 155.5 | ||
| style='text-align:right'| 19306 | | style='text-align:right'| 19306 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 16684 | | style='text-align:right'| 16684 | ||
| 71, 1, [http://genome-test. | | 71, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fr1&position=chrUn:149577204-149577346 chrUn:149577204-149577346] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=fr1 plot fr1] | ||
|- | |- | ||
| | | 246 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fr2 fr2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,923: | Line 2,926: | ||
| style='text-align:right'| 313 | | style='text-align:right'| 313 | ||
| style='text-align:right'| 1682 | | style='text-align:right'| 1682 | ||
| style='text-align:right'| 512 | | style='text-align:right'| 512 | ||
| style='text-align:right'| 2231 | | style='text-align:right'| 2231 | ||
| 47, 1, [http://genome-test. | | 47, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fr2&position=chrUn:336404518-336404612 chrUn:336404518-336404612] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=fr2 plot fr2] | ||
|- | |- | ||
| | | 247 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000180615.1/ GCF_000180615.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000180615.1/ GCF_000180615.1] | ||
| tbd | | tbd | ||
Line 2,937: | Line 2,939: | ||
| style='text-align:right'| 229 | | style='text-align:right'| 229 | ||
| style='text-align:right'| 1827 | | style='text-align:right'| 1827 | ||
| style='text-align:right'| 286 | | style='text-align:right'| 286 | ||
| style='text-align:right'| 2291 | | style='text-align:right'| 2291 | ||
| 47, 1, [http://genome-test. | | 47, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fr3&position=HE592038:5063-5157 HE592038:5063-5157] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=fr3 plot fr3] | ||
|- | |- | ||
| | | 248 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fukDam1 fukDam1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000743615.1/ GCF_000743615.1] | |||
| SOAPdenovo v. 1.06 | |||
| style='text-align:right'| 793 | |||
| style='text-align:right'| 203 | |||
| style='text-align:right'| 238200 | |||
| style='text-align:right'| 519 | |||
| style='text-align:right'| 931836 | |||
| 991, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fukDam1&position=NW_011045963v1:25160-27151 NW_011045963v1:25160-27151] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=fukDam1 plot fukDam1] | |||
|- | |||
| 249 | |||
| 2014 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fulGla1 fulGla1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690835.1/ GCF_000690835.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690835.1/ GCF_000690835.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 2,951: | Line 2,965: | ||
| style='text-align:right'| 336.5 | | style='text-align:right'| 336.5 | ||
| style='text-align:right'| 2583 | | style='text-align:right'| 2583 | ||
| style='text-align:right'| 103.5 | | style='text-align:right'| 103.5 | ||
| style='text-align:right'| 1637 | | style='text-align:right'| 1637 | ||
| 450, 20, [http://genome-test. | | 450, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=fulGla1&position=KK597768:8602-9521 KK597768:8602-9521] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=fulGla1 plot fulGla1] | ||
|- | |- | ||
| | | 250 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000231765.1/ GCA_000231765.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000231765.1/ GCA_000231765.1] | ||
| tbd | | tbd | ||
Line 2,965: | Line 2,978: | ||
| style='text-align:right'| 53 | | style='text-align:right'| 53 | ||
| style='text-align:right'| 11363 | | style='text-align:right'| 11363 | ||
| style='text-align:right'| 270 | | style='text-align:right'| 270 | ||
| style='text-align:right'| 70748 | | style='text-align:right'| 70748 | ||
| 51, 1, [http://genome-test. | | 51, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gadMor1&position=CAEA01526699:46-148 CAEA01526699:46-148] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=gadMor1 plot gadMor1] | ||
|- | |- | ||
| | | 251 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal2 galGal2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,979: | Line 2,991: | ||
| style='text-align:right'| 40 | | style='text-align:right'| 40 | ||
| style='text-align:right'| 12930 | | style='text-align:right'| 12930 | ||
| style='text-align:right'| 124 | | style='text-align:right'| 124 | ||
| style='text-align:right'| 17674 | | style='text-align:right'| 17674 | ||
| 778, 21, [http://genome-test. | | 778, 21, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal2&position=chr3:68417113-68418689 chr3:68417113-68418689] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=galGal2 plot galGal2] | ||
|- | |- | ||
| | | 252 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal3 galGal3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 2,993: | Line 3,004: | ||
| style='text-align:right'| 37 | | style='text-align:right'| 37 | ||
| style='text-align:right'| 34199 | | style='text-align:right'| 34199 | ||
| style='text-align:right'| 500 | | style='text-align:right'| 500 | ||
| style='text-align:right'| 325853 | | style='text-align:right'| 325853 | ||
| 479, 10, [http://genome-test. | | 479, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal3&position=chrUn_random:55035794-55036761 chrUn_random:55035794-55036761] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=galGal3 plot galGal3] | ||
|- | |- | ||
| | | 253 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.3/ GCF_000002315.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.3/ GCF_000002315.3] | ||
| Celera Assembler v. 5.4 | | Celera Assembler v. 5.4 | ||
Line 3,007: | Line 3,017: | ||
| style='text-align:right'| 401 | | style='text-align:right'| 401 | ||
| style='text-align:right'| 22946 | | style='text-align:right'| 22946 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 31537 | | style='text-align:right'| 31537 | ||
| 805, 100, [http://genome-test. | | 805, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal4&position=chr19:3903221-3904930 chr19:3903221-3904930] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=galGal4 plot galGal4] | ||
|- | |- | ||
| | | 254 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal5 galGal5] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.4/ GCF_000002315.4] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.4/ GCF_000002315.4] | ||
| MHAP/PBcR v. 8.2beta | | MHAP/PBcR v. 8.2beta | ||
Line 3,021: | Line 3,030: | ||
| style='text-align:right'| 33 | | style='text-align:right'| 33 | ||
| style='text-align:right'| 33 | | style='text-align:right'| 33 | ||
| style='text-align:right'| 795 | | style='text-align:right'| 795 | ||
| style='text-align:right'| 795 | | style='text-align:right'| 795 | ||
| 33, 795, [http://genome-test. | | 33, 795, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal5&position=chrUn_NT_465606v1:9086-9946 chrUn_NT_465606v1:9086-9946] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=galGal5 plot galGal5] | ||
|- | |- | ||
| | | 256 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galVar1 galVar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000696425.1/ GCF_000696425.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000696425.1/ GCF_000696425.1] | ||
| SOAPdenovo2 v. April 2014 | | SOAPdenovo2 v. April 2014 | ||
Line 3,035: | Line 3,043: | ||
| style='text-align:right'| 61 | | style='text-align:right'| 61 | ||
| style='text-align:right'| 5626241 | | style='text-align:right'| 5626241 | ||
| style='text-align:right'| 419 | | style='text-align:right'| 419 | ||
| style='text-align:right'| 24866346 | | style='text-align:right'| 24866346 | ||
| 997, 1, [http://genome-test. | | 997, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galVar1&position=NW_007727116v1:311725-313719 NW_007727116v1:311725-313719] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=galVar1 plot galVar1] | ||
|- | |- | ||
| | | 257 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,049: | Line 3,056: | ||
| style='text-align:right'| 46.5 | | style='text-align:right'| 46.5 | ||
| style='text-align:right'| 1970 | | style='text-align:right'| 1970 | ||
| style='text-align:right'| 117.5 | | style='text-align:right'| 117.5 | ||
| style='text-align:right'| 2520 | | style='text-align:right'| 2520 | ||
| 841, 100, [http://genome-test. | | 841, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1&position=chrUn:38727446-38729227 chrUn:38727446-38729227] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=gasAcu1 plot gasAcu1] | ||
|- | |- | ||
| | | 259 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gavGan0 gavGan0] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,063: | Line 3,069: | ||
| style='text-align:right'| 134 | | style='text-align:right'| 134 | ||
| style='text-align:right'| 5187944 | | style='text-align:right'| 5187944 | ||
| style='text-align:right'| 5000 | | style='text-align:right'| 5000 | ||
| style='text-align:right'| 145799649 | | style='text-align:right'| 145799649 | ||
| 915, 10, [http://genome-test. | | 915, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gavGan0&position=scaffold24725:12789-14628 scaffold24725:12789-14628] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=gavGan0 plot gavGan0] | ||
|- | |- | ||
| | | 260 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gavSte1 gavSte1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690875.1/ GCF_000690875.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690875.1/ GCF_000690875.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 3,077: | Line 3,082: | ||
| style='text-align:right'| 164 | | style='text-align:right'| 164 | ||
| style='text-align:right'| 848 | | style='text-align:right'| 848 | ||
| style='text-align:right'| 318 | | style='text-align:right'| 318 | ||
| style='text-align:right'| 2312 | | style='text-align:right'| 2312 | ||
| 269, 245, [http://genome-test. | | 269, 245, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gavSte1&position=KK640233:828-1610 KK640233:828-1610] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=gavSte1 plot gavSte1] | ||
|- | |- | ||
| | | 261 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000277835.1/ GCF_000277835.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000277835.1/ GCF_000277835.1] | ||
| SOAPdenovo v. 2.01 | | SOAPdenovo v. 2.01 | ||
Line 3,091: | Line 3,095: | ||
| style='text-align:right'| 105.5 | | style='text-align:right'| 105.5 | ||
| style='text-align:right'| 4877 | | style='text-align:right'| 4877 | ||
| style='text-align:right'| 945.5 | | style='text-align:right'| 945.5 | ||
| style='text-align:right'| 51025 | | style='text-align:right'| 51025 | ||
| 617, 11, [http://genome-test. | | 617, 11, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=geoFor1&position=JH739922:1318693-1319937 JH739922:1318693-1319937] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=geoFor1 plot geoFor1] | ||
|- | |- | ||
| | | 263 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gorGor2 gorGor2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,105: | Line 3,108: | ||
| style='text-align:right'| 247 | | style='text-align:right'| 247 | ||
| style='text-align:right'| 2365617 | | style='text-align:right'| 2365617 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 499615 | | style='text-align:right'| 499615 | ||
| 1000, 10, [http://genome-test. | | 1000, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gorGor2&position=chr10_101645027_418909:206049-208058 chr10_101645027_418909:206049-208058] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=gorGor2 plot gorGor2] | ||
|- | |- | ||
| | | 264 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151905.1/ GCF_000151905.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151905.1/ GCF_000151905.1] | ||
| tbd | | tbd | ||
Line 3,119: | Line 3,121: | ||
| style='text-align:right'| 246 | | style='text-align:right'| 246 | ||
| style='text-align:right'| 2475426 | | style='text-align:right'| 2475426 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 533805 | | style='text-align:right'| 533805 | ||
| 1000, 10, [http://genome-test. | | 1000, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gorGor3&position=chr10:101539188-101541197 chr10:101539188-101541197] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=gorGor3 plot gorGor3] | ||
|- | |- | ||
| | | 265 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gorGor4 gorGor4] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000151905.3/ GCA_000151905.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000151905.3/ GCA_000151905.3] | ||
| tbd | | tbd | ||
Line 3,133: | Line 3,134: | ||
| style='text-align:right'| 94 | | style='text-align:right'| 94 | ||
| style='text-align:right'| 1514940 | | style='text-align:right'| 1514940 | ||
| style='text-align:right'| 25 | | style='text-align:right'| 25 | ||
| style='text-align:right'| 982883 | | style='text-align:right'| 982883 | ||
| 246, 1, [http://genome-test. | | 246, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gorGor4&position=chr9:24397320-24397812 chr9:24397320-24397812] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=gorGor4 plot gorGor4] | ||
|- | |- | ||
| | | 267 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=haeCon1 haeCon1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,147: | Line 3,147: | ||
| style='text-align:right'| 39 | | style='text-align:right'| 39 | ||
| style='text-align:right'| 1031 | | style='text-align:right'| 1031 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 1745 | | style='text-align:right'| 1745 | ||
| 58, 10, [http://genome-test. | | 58, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=haeCon1&position=Hcon_Contig0056815:13389-13514 Hcon_Contig0056815:13389-13514] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=haeCon1 plot haeCon1] | ||
|- | |- | ||
| | | 268 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,161: | Line 3,160: | ||
| style='text-align:right'| 149 | | style='text-align:right'| 149 | ||
| style='text-align:right'| 831727 | | style='text-align:right'| 831727 | ||
| style='text-align:right'| 55 | | style='text-align:right'| 55 | ||
| style='text-align:right'| 351011 | | style='text-align:right'| 351011 | ||
| 700, 1, [http://genome-test. | | 700, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=haeCon2&position=scaffold_63:260903-262303 scaffold_63:260903-262303] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=haeCon2 plot haeCon2] | ||
|- | |- | ||
| | | 269 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=halAlb1 halAlb1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691405.1/ GCF_000691405.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691405.1/ GCF_000691405.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 3,175: | Line 3,173: | ||
| style='text-align:right'| 126 | | style='text-align:right'| 126 | ||
| style='text-align:right'| 1936 | | style='text-align:right'| 1936 | ||
| style='text-align:right'| 370 | | style='text-align:right'| 370 | ||
| style='text-align:right'| 3807 | | style='text-align:right'| 3807 | ||
| 466, 102, [http://genome-test. | | 466, 102, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=halAlb1&position=KK641449:26277-27310 KK641449:26277-27310] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=halAlb1 plot halAlb1] | ||
|- | |- | ||
| | | 270 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=halLeu1 halLeu1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000737465.1/ GCF_000737465.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000737465.1/ GCF_000737465.1] | ||
| SOAPdenovo2 v. May 2014 | | SOAPdenovo2 v. May 2014 | ||
Line 3,189: | Line 3,186: | ||
| style='text-align:right'| 280 | | style='text-align:right'| 280 | ||
| style='text-align:right'| 4342 | | style='text-align:right'| 4342 | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 1676 | | style='text-align:right'| 1676 | ||
| 194, 10, [http://genome-test. | | 194, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=halLeu1&position=KL869356:8708537-8708934 KL869356:8708537-8708934] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=halLeu1 plot halLeu1] | ||
|- | |- | ||
| | | 271 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239415.1/ GCF_000239415.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239415.1/ GCF_000239415.1] | ||
| ALLPATHS-LG v. R35951 | | ALLPATHS-LG v. R35951 | ||
Line 3,203: | Line 3,199: | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 135908 | | style='text-align:right'| 135908 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 374038 | | style='text-align:right'| 374038 | ||
| 975, 20, [http://genome-test. | | 975, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hapBur1&position=JH425754:7557-9526 JH425754:7557-9526] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=hapBur1 plot hapBur1] | ||
|- | |- | ||
| | | 273 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000223415.1/ GCA_000223415.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000223415.1/ GCA_000223415.1] | ||
| Celera assembler v. 6.0 | | Celera assembler v. 6.0 | ||
Line 3,217: | Line 3,212: | ||
| style='text-align:right'| 228 | | style='text-align:right'| 228 | ||
| style='text-align:right'| 1282 | | style='text-align:right'| 1282 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 60 | | style='text-align:right'| 60 | ||
| 1000, 20, [http://genome-test. | | 1000, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hetBac1&position=GL996479v1:885362-887381 GL996479v1:885362-887381] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=hetBac1 plot hetBac1] | ||
|- | |- | ||
| | | 274 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,231: | Line 3,225: | ||
| style='text-align:right'| 313 | | style='text-align:right'| 313 | ||
| style='text-align:right'| 285174 | | style='text-align:right'| 285174 | ||
| style='text-align:right'| 1994 | | style='text-align:right'| 1994 | ||
| style='text-align:right'| 2914751 | | style='text-align:right'| 2914751 | ||
| 785, 43, [http://genome-test. | | 785, 43, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hetGla1&position=JH165660:4306-5918 JH165660:4306-5918] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=hetGla1 plot hetGla1] | ||
|- | |- | ||
| | | 275 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000247695.1/ GCF_000247695.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000247695.1/ GCF_000247695.1] | ||
| AllPaths v. R39605 | | AllPaths v. R39605 | ||
Line 3,245: | Line 3,238: | ||
| style='text-align:right'| 70 | | style='text-align:right'| 70 | ||
| style='text-align:right'| 44604 | | style='text-align:right'| 44604 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 201552 | | style='text-align:right'| 201552 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hetGla2&position=JH602085:17402968-17405067 JH602085:17402968-17405067] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=hetGla2 plot hetGla2] | ||
|- | |- | ||
| | | 276 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,259: | Line 3,251: | ||
| style='text-align:right'| 200 | | style='text-align:right'| 200 | ||
| style='text-align:right'| 200 | | style='text-align:right'| 200 | ||
| style='text-align:right'| 3000000 | | style='text-align:right'| 3000000 | ||
| style='text-align:right'| 3000000 | | style='text-align:right'| 3000000 | ||
| 200, 3000000, [http://genome-test. | | 200, 3000000, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chrY:10104354-13104753 chrY:10104354-13104753] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=hg19 plot hg19] | ||
|- | |- | ||
| | | 277 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/ GCF_000001405.26] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/ GCF_000001405.26] | ||
| tbd | | tbd | ||
Line 3,273: | Line 3,264: | ||
| style='text-align:right'| 78 | | style='text-align:right'| 78 | ||
| style='text-align:right'| 974 | | style='text-align:right'| 974 | ||
| style='text-align:right'| 440 | | style='text-align:right'| 440 | ||
| style='text-align:right'| 56689 | | style='text-align:right'| 56689 | ||
| 125, 20, [http://genome-test. | | 125, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrUn_KI270442v1:175618-175887 chrUn_KI270442v1:175618-175887] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=hg38 plot hg38] | ||
|- | |- | ||
| | | 281 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000280705.1/ GCF_000280705.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000280705.1/ GCF_000280705.1] | ||
| ALLPATHS v. R41689 HAPLOIDIFY=True | | ALLPATHS v. R41689 HAPLOIDIFY=True | ||
Line 3,287: | Line 3,277: | ||
| style='text-align:right'| 63 | | style='text-align:right'| 63 | ||
| style='text-align:right'| 196366 | | style='text-align:right'| 196366 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 569918 | | style='text-align:right'| 569918 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=jacJac1&position=JH725440:52488719-52490818 JH725440:52488719-52490818] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=jacJac1 plot jacJac1] | ||
|- | |- | ||
| | | 282 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000225785.1/ GCF_000225785.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000225785.1/ GCF_000225785.1] | ||
| AllPaths v. R36819 | | AllPaths v. R36819 | ||
Line 3,301: | Line 3,290: | ||
| style='text-align:right'| 77 | | style='text-align:right'| 77 | ||
| style='text-align:right'| 159059 | | style='text-align:right'| 159059 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 504858 | | style='text-align:right'| 504858 | ||
| 955, 100, [http://genome-test. | | 955, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=latCha1&position=JH127253:476850-478859 JH127253:476850-478859] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=latCha1 plot latCha1] | ||
|- | |- | ||
| | | 284 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lepDis1 lepDis1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691785.1/ GCF_000691785.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691785.1/ GCF_000691785.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 3,315: | Line 3,303: | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 229 | | style='text-align:right'| 229 | ||
| style='text-align:right'| 229 | | style='text-align:right'| 229 | ||
| 50, 229, [http://genome-test. | | 50, 229, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lepDis1&position=KK681583:9399-9727 KK681583:9399-9727] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=lepDis1 plot lepDis1] | ||
|- | |- | ||
| | | 285 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000242695.1/ GCF_000242695.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000242695.1/ GCF_000242695.1] | ||
| AllPaths v. R38293 | | AllPaths v. R38293 | ||
Line 3,329: | Line 3,316: | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 232474 | | style='text-align:right'| 232474 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 466733 | | style='text-align:right'| 466733 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1&position=chrLG4:37780111-37782210 chrLG4:37780111-37782210] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=lepOcu1 plot lepOcu1] | ||
|- | |- | ||
| | | 286 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000349705.1/ GCF_000349705.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000349705.1/ GCF_000349705.1] | ||
| allpaths v. R41856 HAPLOIDIFY=True | | allpaths v. R41856 HAPLOIDIFY=True | ||
Line 3,343: | Line 3,329: | ||
| style='text-align:right'| 63 | | style='text-align:right'| 63 | ||
| style='text-align:right'| 135843 | | style='text-align:right'| 135843 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 1218867 | | style='text-align:right'| 1218867 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lepWed1&position=KB715312:1023296-1025395 KB715312:1023296-1025395] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=lepWed1 plot lepWed1] | ||
|- | |- | ||
| | | 287 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=letCam1 letCam1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000466285.1/ GCA_000466285.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000466285.1/ GCA_000466285.1] | ||
| Newbler v. 2.7 | | Newbler v. 2.7 | ||
Line 3,357: | Line 3,342: | ||
| style='text-align:right'| 69 | | style='text-align:right'| 69 | ||
| style='text-align:right'| 123952 | | style='text-align:right'| 123952 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 739039 | | style='text-align:right'| 739039 | ||
| 280, 39, [http://genome-test. | | 280, 39, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=letCam1&position=KE994354:70338-70936 KE994354:70338-70936] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=letCam1 plot letCam1] | ||
|- | |- | ||
| | | 288 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| linHum0 | | style='text-align:center;'| linHum0 | ||
Line 3,371: | Line 3,355: | ||
| style='text-align:right'| 48 | | style='text-align:right'| 48 | ||
| style='text-align:right'| 10176 | | style='text-align:right'| 10176 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 20986 | | style='text-align:right'| 20986 | ||
| 480, 100, [http://genome-test. | | 480, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=linHum0&position=NW_012159984:28893-29952 NW_012159984:28893-29952] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=linHum0 plot linHum0] | ||
|- | |- | ||
| | | 289 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lipVex1 lipVex1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000442215.1/ GCF_000442215.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000442215.1/ GCF_000442215.1] | ||
| SOAPdenovo v. 2.01 | | SOAPdenovo v. 2.01 | ||
Line 3,385: | Line 3,368: | ||
| style='text-align:right'| 92 | | style='text-align:right'| 92 | ||
| style='text-align:right'| 66483 | | style='text-align:right'| 66483 | ||
| style='text-align:right'| 985.5 | | style='text-align:right'| 985.5 | ||
| style='text-align:right'| 386576 | | style='text-align:right'| 386576 | ||
| 876, 10, [http://genome-test. | | 876, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lipVex1&position=KE557659:158624-160385 KE557659:158624-160385] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=lipVex1 plot lipVex1] | ||
|- | |- | ||
| | | 290 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000183805.3/ GCA_000183805.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000183805.3/ GCA_000183805.3] | ||
| Newbler v. 2.1-PreRelease-4/28/2009 | | Newbler v. 2.1-PreRelease-4/28/2009 | ||
Line 3,399: | Line 3,381: | ||
| style='text-align:right'| 382 | | style='text-align:right'| 382 | ||
| style='text-align:right'| 123384 | | style='text-align:right'| 123384 | ||
| style='text-align:right'| 215 | | style='text-align:right'| 215 | ||
| style='text-align:right'| 94547 | | style='text-align:right'| 94547 | ||
| 604, 20, [http://genome-test. | | 604, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1&position=JH712068v1:803529-804756 JH712068v1:803529-804756] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=loaLoa1 plot loaLoa1] | ||
|- | |- | ||
| | | 291 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=loxAfr1 loxAfr1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,413: | Line 3,394: | ||
| style='text-align:right'| 44 | | style='text-align:right'| 44 | ||
| style='text-align:right'| 11426 | | style='text-align:right'| 11426 | ||
| style='text-align:right'| 206 | | style='text-align:right'| 206 | ||
| style='text-align:right'| 80801 | | style='text-align:right'| 80801 | ||
| 687, 284, [http://genome-test. | | 687, 284, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=loxAfr1&position=scaffold_10531:71539-73196 scaffold_10531:71539-73196] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=loxAfr1 plot loxAfr1] | ||
|- | |- | ||
| | | 292 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=loxAfr2 loxAfr2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,427: | Line 3,407: | ||
| style='text-align:right'| 165.5 | | style='text-align:right'| 165.5 | ||
| style='text-align:right'| 20735 | | style='text-align:right'| 20735 | ||
| style='text-align:right'| 1078 | | style='text-align:right'| 1078 | ||
| style='text-align:right'| 180887 | | style='text-align:right'| 180887 | ||
| 989, 100, [http://genome-test. | | 989, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=loxAfr2&position=scaffold_3386:17920-19997 scaffold_3386:17920-19997] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=loxAfr2 plot loxAfr2] | ||
|- | |- | ||
| | | 293 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001905.1/ GCF_000001905.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001905.1/ GCF_000001905.1] | ||
| tbd | | tbd | ||
Line 3,441: | Line 3,420: | ||
| style='text-align:right'| 45 | | style='text-align:right'| 45 | ||
| style='text-align:right'| 1924 | | style='text-align:right'| 1924 | ||
| style='text-align:right'| 398 | | style='text-align:right'| 398 | ||
| style='text-align:right'| 9784 | | style='text-align:right'| 9784 | ||
| 731, 100, [http://genome-test. | | 731, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3&position=scaffold_211:333226-334787 scaffold_211:333226-334787] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=loxAfr3 plot loxAfr3] | ||
|- | |- | ||
| | | 294 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=macEug1 macEug1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,455: | Line 3,433: | ||
| style='text-align:right'| 57 | | style='text-align:right'| 57 | ||
| style='text-align:right'| 504656 | | style='text-align:right'| 504656 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 562759 | | style='text-align:right'| 562759 | ||
| 146, 1, [http://genome-test. | | 146, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=macEug1&position=Scaffold27901:25044-25336 Scaffold27901:25044-25336] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=macEug1 plot macEug1] | ||
|- | |- | ||
| | | 295 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000004035.1/ GCA_000004035.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000004035.1/ GCA_000004035.1] | ||
| tbd | | tbd | ||
Line 3,469: | Line 3,446: | ||
| style='text-align:right'| 55 | | style='text-align:right'| 55 | ||
| style='text-align:right'| 752361 | | style='text-align:right'| 752361 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 1102638 | | style='text-align:right'| 1102638 | ||
| 146, 1, [http://genome-test. | | 146, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=macEug2&position=GL058785:13153-13445 GL058785:13153-13445] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=macEug2 plot macEug2] | ||
|- | |- | ||
| | | 296 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000364345.1/ GCF_000364345.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000364345.1/ GCF_000364345.1] | ||
| SOAPdenovo v. 1.0.5, SRPRISM v. 2.4; ARGO v. 0.1 | | SOAPdenovo v. 1.0.5, SRPRISM v. 2.4; ARGO v. 0.1 | ||
Line 3,483: | Line 3,459: | ||
| style='text-align:right'| 106.5 | | style='text-align:right'| 106.5 | ||
| style='text-align:right'| 145024 | | style='text-align:right'| 145024 | ||
| style='text-align:right'| 204.5 | | style='text-align:right'| 204.5 | ||
| style='text-align:right'| 1039415 | | style='text-align:right'| 1039415 | ||
| 849, 10, [http://genome-test. | | 849, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=macFas5&position=chr14:81860376-81862083 chr14:81860376-81862083] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=macFas5 plot macFas5] | ||
|- | |- | ||
| | | 297 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=macNem1 macNem1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000956065.1/ GCF_000956065.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000956065.1/ GCF_000956065.1] | ||
| AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2; PBJelly2 v. 14.9.9 | | AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2; PBJelly2 v. 14.9.9 | ||
Line 3,497: | Line 3,472: | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 237662 | | style='text-align:right'| 237662 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 834836 | | style='text-align:right'| 834836 | ||
| 982, 25, [http://genome-test. | | 982, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=macNem1&position=NW_012016132v1:18826350-18828338 NW_012016132v1:18826350-18828338] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=macNem1 plot macNem1] | ||
|- | |- | ||
| | | 298 | ||
| 2015 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=manLeu1 manLeu1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000951045.1/ GCF_000951045.1] | |||
| AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 | |||
| style='text-align:right'| 6092 | |||
| style='text-align:right'| 95 | |||
| style='text-align:right'| 1723434 | |||
| style='text-align:right'| 50 | |||
| style='text-align:right'| 1354856 | |||
| 1000, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=manLeu1&position=NW_012101473v1:89787-91836 NW_012101473v1:89787-91836] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=manLeu1 plot manLeu1] | |||
|- | |||
| 299 | |||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=manPen1 manPen1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000738955.1/ GCA_000738955.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000738955.1/ GCA_000738955.1] | ||
| SOAPdenovo v. May 2014 | | SOAPdenovo v. May 2014 | ||
Line 3,511: | Line 3,498: | ||
| style='text-align:right'| 101 | | style='text-align:right'| 101 | ||
| style='text-align:right'| 5536376 | | style='text-align:right'| 5536376 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 13090743 | | style='text-align:right'| 13090743 | ||
| 1000, 1, [http://genome-test. | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=manPen1&position=KN006700:349054-351054 KN006700:349054-351054] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=manPen1 plot manPen1] | ||
|- | |- | ||
| | | 300 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=manVit1 manVit1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000692015.1/ GCF_000692015.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000692015.1/ GCF_000692015.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 3,525: | Line 3,511: | ||
| style='text-align:right'| 231 | | style='text-align:right'| 231 | ||
| style='text-align:right'| 8844 | | style='text-align:right'| 8844 | ||
| style='text-align:right'| 1303 | | style='text-align:right'| 1303 | ||
| style='text-align:right'| 65245 | | style='text-align:right'| 65245 | ||
| 701, 296, [http://genome-test. | | 701, 296, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=manVit1&position=KK732740:655429-657126 KK732740:655429-657126] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=manVit1 plot manVit1] | ||
|- | |- | ||
| | | 302 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000238955.1/ GCF_000238955.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000238955.1/ GCF_000238955.1] | ||
| AllPaths v. R37043 | | AllPaths v. R37043 | ||
Line 3,539: | Line 3,524: | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 241336 | | style='text-align:right'| 241336 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 682313 | | style='text-align:right'| 682313 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1&position=JH720538:3252564-3254663 JH720538:3252564-3254663] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mayZeb1 plot mayZeb1] | ||
|- | |- | ||
| | | 303 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=megLyr1 megLyr1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000465345.1/ GCA_000465345.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000465345.1/ GCA_000465345.1] | ||
| CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | ||
Line 3,553: | Line 3,537: | ||
| style='text-align:right'| 38 | | style='text-align:right'| 38 | ||
| style='text-align:right'| 1716 | | style='text-align:right'| 1716 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 185 | | style='text-align:right'| 185 | ||
| 83, 1, [http://genome-test. | | 83, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=megLyr1&position=KI087181:1999-2165 KI087181:1999-2165] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=megLyr1 plot megLyr1] | ||
|- | |- | ||
| | | 304 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,567: | Line 3,550: | ||
| style='text-align:right'| 127 | | style='text-align:right'| 127 | ||
| style='text-align:right'| 136229 | | style='text-align:right'| 136229 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 661041 | | style='text-align:right'| 661041 | ||
| 169, 1, [http://genome-test. | | 169, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melGal1&position=chr3:54352580-54352918 chr3:54352580-54352918] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=melGal1 plot melGal1] | ||
|- | |- | ||
| | | 305 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melGal5 melGal5] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000146605.2/ GCF_000146605.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000146605.2/ GCF_000146605.2] | ||
| MaSuRCA v. 1.9.2 | | MaSuRCA v. 1.9.2 | ||
Line 3,581: | Line 3,563: | ||
| style='text-align:right'| 181 | | style='text-align:right'| 181 | ||
| style='text-align:right'| 17431 | | style='text-align:right'| 17431 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 76065 | | style='text-align:right'| 76065 | ||
| 724, 100, [http://genome-test. | | 724, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melGal5&position=chrZ:7873702-7875249 chrZ:7873702-7875249] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=melGal5 plot melGal5] | ||
|- | |- | ||
| | | 308 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,595: | Line 3,576: | ||
| style='text-align:right'| 77 | | style='text-align:right'| 77 | ||
| style='text-align:right'| 211 | | style='text-align:right'| 211 | ||
| style='text-align:right'| 201 | | style='text-align:right'| 201 | ||
| style='text-align:right'| 513 | | style='text-align:right'| 513 | ||
| 98, 201, [http://genome-test. | | 98, 201, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melInc2&position=MiV1ctg3:286050-286446 MiV1ctg3:286050-286446] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=melInc2 plot melInc2] | ||
|- | |- | ||
| | | 309 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000238935.1/ GCF_000238935.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000238935.1/ GCF_000238935.1] | ||
| Celera v. 6.1 | | Celera v. 6.1 | ||
Line 3,609: | Line 3,589: | ||
| style='text-align:right'| 89 | | style='text-align:right'| 89 | ||
| style='text-align:right'| 5925 | | style='text-align:right'| 5925 | ||
| style='text-align:right'| 41 | | style='text-align:right'| 41 | ||
| style='text-align:right'| 36796 | | style='text-align:right'| 36796 | ||
| 334, 20, [http://genome-test. | | 334, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melUnd1&position=JH556232:114057-114744 JH556232:114057-114744] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=melUnd1 plot melUnd1] | ||
|- | |- | ||
| | | 310 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=merNub1 merNub1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691845.1/ GCF_000691845.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691845.1/ GCF_000691845.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 3,623: | Line 3,602: | ||
| style='text-align:right'| 154.5 | | style='text-align:right'| 154.5 | ||
| style='text-align:right'| 309 | | style='text-align:right'| 309 | ||
| style='text-align:right'| 361 | | style='text-align:right'| 361 | ||
| style='text-align:right'| 722 | | style='text-align:right'| 722 | ||
| 245, 311, [http://genome-test. | | 245, 311, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=merNub1&position=KK701714:10568-11368 KK701714:10568-11368] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=merNub1 plot merNub1] | ||
|- | |- | ||
| | | 311 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000349665.1/ GCF_000349665.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000349665.1/ GCF_000349665.1] | ||
| allpaths v. R44683 | | allpaths v. R44683 | ||
Line 3,637: | Line 3,615: | ||
| style='text-align:right'| 71 | | style='text-align:right'| 71 | ||
| style='text-align:right'| 248381 | | style='text-align:right'| 248381 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 755166 | | style='text-align:right'| 755166 | ||
| 212, 100, [http://genome-test. | | 212, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mesAur1&position=KB708269:3930600-3931123 KB708269:3930600-3931123] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mesAur1 plot mesAur1] | ||
|- | |- | ||
| | | 312 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mesUni1 mesUni1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000695765.1/ GCF_000695765.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000695765.1/ GCF_000695765.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 3,651: | Line 3,628: | ||
| style='text-align:right'| 347 | | style='text-align:right'| 347 | ||
| style='text-align:right'| 1434 | | style='text-align:right'| 1434 | ||
| style='text-align:right'| 124.5 | | style='text-align:right'| 124.5 | ||
| style='text-align:right'| 451 | | style='text-align:right'| 451 | ||
| 332, 23, [http://genome-test. | | 332, 23, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mesUni1&position=KK817080:7082-7768 KK817080:7082-7768] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mesUni1 plot mesUni1] | ||
|- | |- | ||
| | | 313 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| micMur0 | | style='text-align:center;'| micMur0 | ||
Line 3,665: | Line 3,641: | ||
| style='text-align:right'| 256 | | style='text-align:right'| 256 | ||
| style='text-align:right'| 90483 | | style='text-align:right'| 90483 | ||
| style='text-align:right'| 780 | | style='text-align:right'| 780 | ||
| style='text-align:right'| 749299 | | style='text-align:right'| 749299 | ||
| 997, 100, [http://genome-test. | | 997, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micMur0&position=GeneScaffold_4747:166512-168605 GeneScaffold_4747:166512-168605] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=micMur0 plot micMur0] | ||
|- | |- | ||
| | | 314 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000165445.1/ GCA_000165445.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000165445.1/ GCA_000165445.1] | ||
| tbd | | tbd | ||
Line 3,679: | Line 3,654: | ||
| style='text-align:right'| 124.5 | | style='text-align:right'| 124.5 | ||
| style='text-align:right'| 33320 | | style='text-align:right'| 33320 | ||
| style='text-align:right'| 952.5 | | style='text-align:right'| 952.5 | ||
| style='text-align:right'| 207469 | | style='text-align:right'| 207469 | ||
| 969, 100, [http://genome-test. | | 969, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micMur1&position=scaffold_5185:107104-109141 scaffold_5185:107104-109141] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=micMur1 plot micMur1] | ||
|- | |- | ||
| | | 315 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micMur2 micMur2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000165445.1/ GCF_000165445.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000165445.1/ GCF_000165445.1] | ||
| AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9 | | AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9 | ||
Line 3,693: | Line 3,667: | ||
| style='text-align:right'| 90 | | style='text-align:right'| 90 | ||
| style='text-align:right'| 85250 | | style='text-align:right'| 85250 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 267164 | | style='text-align:right'| 267164 | ||
| 999, 25, [http://genome-test. | | 999, 25, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micMur2&position=KQ057470v1:2292330-2294352 KQ057470v1:2292330-2294352] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=micMur2 plot micMur2] | ||
|- | |- | ||
| | | 316 | ||
| 2017 | | 2017 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micMur3 micMur3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000165445.2/ GCF_000165445.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000165445.2/ GCF_000165445.2] | ||
| AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9; Lachesis v. shendurelab-LACHESIS-2151de9; BioNano IrysSolve v. 2.1 | | AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9; Lachesis v. shendurelab-LACHESIS-2151de9; BioNano IrysSolve v. 2.1 | ||
Line 3,707: | Line 3,680: | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 73918 | | style='text-align:right'| 73918 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 262987 | | style='text-align:right'| 262987 | ||
| 898, 10, [http://genome-test. | | 898, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micMur3&position=chr2:108635511-108637316 chr2:108635511-108637316] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=micMur3 plot micMur3] | ||
|- | |- | ||
| | | 317 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000317375.1/ GCF_000317375.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000317375.1/ GCF_000317375.1] | ||
| allpaths v. R41985 HAPLOIDIFY=True SPRS_WRITE_SEPS=True | | allpaths v. R41985 HAPLOIDIFY=True SPRS_WRITE_SEPS=True | ||
Line 3,721: | Line 3,693: | ||
| style='text-align:right'| 65 | | style='text-align:right'| 65 | ||
| style='text-align:right'| 483435 | | style='text-align:right'| 483435 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 1507707 | | style='text-align:right'| 1507707 | ||
| 993, 100, [http://genome-test. | | 993, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=micOch1&position=chr6:54381083-54383168 chr6:54381083-54383168] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=micOch1 plot micOch1] | ||
|- | |- | ||
| | | 318 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,735: | Line 3,706: | ||
| style='text-align:right'| 390.5 | | style='text-align:right'| 390.5 | ||
| style='text-align:right'| 781 | | style='text-align:right'| 781 | ||
| style='text-align:right'| 25879.5 | | style='text-align:right'| 25879.5 | ||
| style='text-align:right'| 51759 | | style='text-align:right'| 51759 | ||
| 477, 1759, [http://genome-test. | | 477, 1759, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm10&position=chrX_GL456233_random:239940-242652 chrX_GL456233_random:239940-242652] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mm10 plot mm10] | ||
|- | |- | ||
| | | 319 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| mm5 | | style='text-align:center;'| mm5 | ||
Line 3,749: | Line 3,719: | ||
| style='text-align:right'| 48.5 | | style='text-align:right'| 48.5 | ||
| style='text-align:right'| 30180 | | style='text-align:right'| 30180 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 76884 | | style='text-align:right'| 76884 | ||
| 921, 100, [http://genome-test. | | 921, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm5&position=chr6:132460596-132462537 chr6:132460596-132462537] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mm5 plot mm5] | ||
|- | |- | ||
| | | 320 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm6 mm6] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,763: | Line 3,732: | ||
| style='text-align:right'| 48 | | style='text-align:right'| 48 | ||
| style='text-align:right'| 17647 | | style='text-align:right'| 17647 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 48212 | | style='text-align:right'| 48212 | ||
| 768, 100, [http://genome-test. | | 768, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm6&position=chr14:100566071-100567706 chr14:100566071-100567706] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mm6 plot mm6] | ||
|- | |- | ||
| | | 321 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm7 mm7] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,777: | Line 3,745: | ||
| style='text-align:right'| 48 | | style='text-align:right'| 48 | ||
| style='text-align:right'| 5475 | | style='text-align:right'| 5475 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 64491 | | style='text-align:right'| 64491 | ||
| 451, 100, [http://genome-test. | | 451, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm7&position=chr15:68974498-68975499 chr15:68974498-68975499] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mm7 plot mm7] | ||
|- | |- | ||
| | | 322 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm8 mm8] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,791: | Line 3,758: | ||
| style='text-align:right'| 161 | | style='text-align:right'| 161 | ||
| style='text-align:right'| 1257 | | style='text-align:right'| 1257 | ||
| style='text-align:right'| 162.5 | | style='text-align:right'| 162.5 | ||
| style='text-align:right'| 50878 | | style='text-align:right'| 50878 | ||
| 520, 353, [http://genome-test. | | 520, 353, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr14:87009574-87010966 chr14:87009574-87010966] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mm8 plot mm8] | ||
|- | |- | ||
| | | 323 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm9 mm9] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,805: | Line 3,771: | ||
| style='text-align:right'| 390.5 | | style='text-align:right'| 390.5 | ||
| style='text-align:right'| 781 | | style='text-align:right'| 781 | ||
| style='text-align:right'| 25879.5 | | style='text-align:right'| 25879.5 | ||
| style='text-align:right'| 51759 | | style='text-align:right'| 51759 | ||
| 477, 1759, [http://genome-test. | | 477, 1759, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chrX_random:239940-242652 chrX_random:239940-242652] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=mm9 plot mm9] | ||
|- | |- | ||
| | | 324 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=monDom1 monDom1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,819: | Line 3,784: | ||
| style='text-align:right'| 53.5 | | style='text-align:right'| 53.5 | ||
| style='text-align:right'| 1891 | | style='text-align:right'| 1891 | ||
| style='text-align:right'| 127 | | style='text-align:right'| 127 | ||
| style='text-align:right'| 11341 | | style='text-align:right'| 11341 | ||
| 696, 100, [http://genome-test. | | 696, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=monDom1&position=scaffold_14754:178069-179560 scaffold_14754:178069-179560] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=monDom1 plot monDom1] | ||
|- | |- | ||
| | | 325 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=monDom2 monDom2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,833: | Line 3,797: | ||
| style='text-align:right'| 428 | | style='text-align:right'| 428 | ||
| style='text-align:right'| 2012 | | style='text-align:right'| 2012 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 520 | | style='text-align:right'| 520 | ||
| 870, 100, [http://genome-test. | | 870, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=monDom2&position=scaffold_38:23849795-23851634 scaffold_38:23849795-23851634] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=monDom2 plot monDom2] | ||
|- | |- | ||
| | | 326 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=monDom4 monDom4] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,847: | Line 3,810: | ||
| style='text-align:right'| 183 | | style='text-align:right'| 183 | ||
| style='text-align:right'| 3070 | | style='text-align:right'| 3070 | ||
| style='text-align:right'| 1000 | | style='text-align:right'| 1000 | ||
| style='text-align:right'| 21732 | | style='text-align:right'| 21732 | ||
| 870, 1, [http://genome-test. | | 870, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=monDom4&position=chr1:400420041-400421781 chr1:400420041-400421781] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=monDom4 plot monDom4] | ||
|- | |- | ||
| | | 327 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,861: | Line 3,823: | ||
| style='text-align:right'| 183 | | style='text-align:right'| 183 | ||
| style='text-align:right'| 3070 | | style='text-align:right'| 3070 | ||
| style='text-align:right'| 1000 | | style='text-align:right'| 1000 | ||
| style='text-align:right'| 21732 | | style='text-align:right'| 21732 | ||
| 870, 1, [http://genome-test. | | 870, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=monDom5&position=chr1:424248968-424250708 chr1:424248968-424250708] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=monDom5 plot monDom5] | ||
|- | |- | ||
| | | 328 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000371365.1/ GCF_000371365.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000371365.1/ GCF_000371365.1] | ||
| AllPathsLG v. September 2012 | | AllPathsLG v. September 2012 | ||
Line 3,875: | Line 3,836: | ||
| style='text-align:right'| 85 | | style='text-align:right'| 85 | ||
| style='text-align:right'| 165577 | | style='text-align:right'| 165577 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 473996 | | style='text-align:right'| 473996 | ||
| 1000, 1, [http://genome-test. | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=musDom2&position=KB855954:134298-136298 KB855954:134298-136298] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=musDom2 plot musDom2] | ||
|- | |- | ||
| | | 329 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1/ GCA_000215625.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1/ GCA_000215625.1] | ||
| ALLPATHS-LG v. R36167 | | ALLPATHS-LG v. R36167 | ||
Line 3,889: | Line 3,849: | ||
| style='text-align:right'| 84 | | style='text-align:right'| 84 | ||
| style='text-align:right'| 107706 | | style='text-align:right'| 107706 | ||
| style='text-align:right'| 44 | | style='text-align:right'| 44 | ||
| style='text-align:right'| 286510 | | style='text-align:right'| 286510 | ||
| 1000, 20, [http://genome-test. | | 1000, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=musFur1&position=GL897138:9717-11736 GL897138:9717-11736] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=musFur1 plot musFur1] | ||
|- | |- | ||
| | | 330 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=myoBra1 myoBra1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000412655.1/ GCF_000412655.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000412655.1/ GCF_000412655.1] | ||
| SOAP de novo v. 2.04 | | SOAP de novo v. 2.04 | ||
Line 3,903: | Line 3,862: | ||
| style='text-align:right'| 119 | | style='text-align:right'| 119 | ||
| style='text-align:right'| 85889 | | style='text-align:right'| 85889 | ||
| style='text-align:right'| 1109 | | style='text-align:right'| 1109 | ||
| style='text-align:right'| 766318 | | style='text-align:right'| 766318 | ||
| 1000, 31, [http://genome-test. | | 1000, 31, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=myoBra1&position=KE163605:2655193-2657223 KE163605:2655193-2657223] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=myoBra1 plot myoBra1] | ||
|- | |- | ||
| | | 331 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000327345.1/ GCF_000327345.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000327345.1/ GCF_000327345.1] | ||
| SOAPdenovo v. 1.06 | | SOAPdenovo v. 1.06 | ||
Line 3,917: | Line 3,875: | ||
| style='text-align:right'| 151 | | style='text-align:right'| 151 | ||
| style='text-align:right'| 56967 | | style='text-align:right'| 56967 | ||
| style='text-align:right'| 1283 | | style='text-align:right'| 1283 | ||
| style='text-align:right'| 942238 | | style='text-align:right'| 942238 | ||
| 502, 19, [http://genome-test. | | 502, 19, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=myoDav1&position=KB106370:3092722-3093744 KB106370:3092722-3093744] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=myoDav1 plot myoDav1] | ||
|- | |- | ||
| | | 332 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1 myoLuc1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 3,931: | Line 3,888: | ||
| style='text-align:right'| 47 | | style='text-align:right'| 47 | ||
| style='text-align:right'| 6392 | | style='text-align:right'| 6392 | ||
| style='text-align:right'| 1551 | | style='text-align:right'| 1551 | ||
| style='text-align:right'| 125787 | | style='text-align:right'| 125787 | ||
| 388, 100, [http://genome-test. | | 388, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1&position=scaffold_150441:136761-137636 scaffold_150441:136761-137636] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=myoLuc1 plot myoLuc1] | ||
|- | |- | ||
| | | 333 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000147115.1/ GCF_000147115.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000147115.1/ GCF_000147115.1] | ||
| Arachne v. Dev. Jan 2010 | | Arachne v. Dev. Jan 2010 | ||
Line 3,945: | Line 3,901: | ||
| style='text-align:right'| 39 | | style='text-align:right'| 39 | ||
| style='text-align:right'| 357 | | style='text-align:right'| 357 | ||
| style='text-align:right'| 410 | | style='text-align:right'| 410 | ||
| style='text-align:right'| 3363 | | style='text-align:right'| 3363 | ||
| 75, 119, [http://genome-test. | | 75, 119, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2&position=GL429781:8032929-8033197 GL429781:8032929-8033197] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=myoLuc2 plot myoLuc2] | ||
|- | |- | ||
| | | 334 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nanGal1 nanGal1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000622305.1/ GCF_000622305.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000622305.1/ GCF_000622305.1] | ||
| SOAPdenovo v. 2.04.4 | | SOAPdenovo v. 2.04.4 | ||
Line 3,959: | Line 3,914: | ||
| style='text-align:right'| 126 | | style='text-align:right'| 126 | ||
| style='text-align:right'| 149781 | | style='text-align:right'| 149781 | ||
| style='text-align:right'| 902.5 | | style='text-align:right'| 902.5 | ||
| style='text-align:right'| 980462 | | style='text-align:right'| 980462 | ||
| 740, 12, [http://genome-test. | | 740, 12, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nanGal1&position=KL200152:4088120-4089611 KL200152:4088120-4089611] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=nanGal1 plot nanGal1] | ||
|- | |- | ||
| | | 335 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nanPar1 nanPar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000935625.1/ GCA_000935625.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000935625.1/ GCA_000935625.1] | ||
| SOAPdenovo v. 1.06 | | SOAPdenovo v. 1.06 | ||
Line 3,973: | Line 3,927: | ||
| style='text-align:right'| 194 | | style='text-align:right'| 194 | ||
| style='text-align:right'| 477991 | | style='text-align:right'| 477991 | ||
| style='text-align:right'| 974 | | style='text-align:right'| 974 | ||
| style='text-align:right'| 2590489 | | style='text-align:right'| 2590489 | ||
| 552, 12, [http://genome-test. | | 552, 12, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nanPar1&position=KN907832v1:31307-32422 KN907832v1:31307-32422] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=nanPar1 plot nanPar1] | ||
|- | |- | ||
| | | 336 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000772465.1/ GCA_000772465.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000772465.1/ GCA_000772465.1] | ||
| phredPhrap v. 1.080812 | | phredPhrap v. 1.080812 | ||
Line 3,987: | Line 3,940: | ||
| style='text-align:right'| 43 | | style='text-align:right'| 43 | ||
| style='text-align:right'| 93736 | | style='text-align:right'| 93736 | ||
| style='text-align:right'| 7 | | style='text-align:right'| 7 | ||
| style='text-align:right'| 126885 | | style='text-align:right'| 126885 | ||
| 117, 1, [http://genome-test. | | 117, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nasLar1&position=chr1:6190345-6190579 chr1:6190345-6190579] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=nasLar1 plot nasLar1] | ||
|- | |- | ||
| | | 337 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000507365.1/ GCF_000507365.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000507365.1/ GCF_000507365.1] | ||
| Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010 | | Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010 | ||
Line 4,001: | Line 3,953: | ||
| style='text-align:right'| 54 | | style='text-align:right'| 54 | ||
| style='text-align:right'| 28538 | | style='text-align:right'| 28538 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 92887 | | style='text-align:right'| 92887 | ||
| 366, 100, [http://genome-test. | | 366, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=necAme1&position=KI657476v1:37386-38217 KI657476v1:37386-38217] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=necAme1 plot necAme1] | ||
|- | |- | ||
| | | 338 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nemVec1 nemVec1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,015: | Line 3,966: | ||
| style='text-align:right'| 378 | | style='text-align:right'| 378 | ||
| style='text-align:right'| 10288 | | style='text-align:right'| 10288 | ||
| style='text-align:right'| 829 | | style='text-align:right'| 829 | ||
| style='text-align:right'| 17106 | | style='text-align:right'| 17106 | ||
| 769, 1, [http://genome-test. | | 769, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nemVec1&position=scaffold_3968:6459-7997 scaffold_3968:6459-7997] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=nemVec1 plot nemVec1] | ||
|- | |- | ||
| | | 339 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239395.1/ GCF_000239395.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239395.1/ GCF_000239395.1] | ||
| ALLPATHS-LG v. R36800 | | ALLPATHS-LG v. R36800 | ||
Line 4,029: | Line 3,979: | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 1321574 | | style='text-align:right'| 1321574 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 665865 | | style='text-align:right'| 665865 | ||
| 998, 20, [http://genome-test. | | 998, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=neoBri1&position=JH422308:3325010-3327025 JH422308:3325010-3327025] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=neoBri1 plot neoBri1] | ||
|- | |||
| 340 | |||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=neoSch1 neoSch1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_002201575.1/ GCF_002201575.1] | |||
| RefAligner v. 5122; Supernova v. 1.1 | |||
| style='text-align:right'| 882 | |||
| style='text-align:right'| 47 | |||
| style='text-align:right'| 69252 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 596284 | |||
| 888, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=neoSch1&position=NW_018726759v1:1-1876 NW_018726759v1:1-1876] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=neoSch1 plot neoSch1] | |||
|- | |- | ||
| | | 341 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nipNip1 nipNip1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708225.1/ GCF_000708225.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708225.1/ GCF_000708225.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,043: | Line 4,005: | ||
| style='text-align:right'| 154 | | style='text-align:right'| 154 | ||
| style='text-align:right'| 11937 | | style='text-align:right'| 11937 | ||
| style='text-align:right'| 1090 | | style='text-align:right'| 1090 | ||
| style='text-align:right'| 77358 | | style='text-align:right'| 77358 | ||
| 514, 15, [http://genome-test. | | 514, 15, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nipNip1&position=KL411148:2104426-2105468 KL411148:2104426-2105468] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=nipNip1 plot nipNip1] | ||
|- | |- | ||
| | | 342 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,057: | Line 4,018: | ||
| style='text-align:right'| 141 | | style='text-align:right'| 141 | ||
| style='text-align:right'| 220161 | | style='text-align:right'| 220161 | ||
| style='text-align:right'| 532 | | style='text-align:right'| 532 | ||
| style='text-align:right'| 1139352 | | style='text-align:right'| 1139352 | ||
| 999, 100, [http://genome-test. | | 999, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1&position=GL397299:16863535-16865632 GL397299:16863535-16865632] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=nomLeu1 plot nomLeu1] | ||
|- | |- | ||
| | | 343 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,071: | Line 4,031: | ||
| style='text-align:right'| 141 | | style='text-align:right'| 141 | ||
| style='text-align:right'| 220161 | | style='text-align:right'| 220161 | ||
| style='text-align:right'| 532 | | style='text-align:right'| 532 | ||
| style='text-align:right'| 1139352 | | style='text-align:right'| 1139352 | ||
| 999, 100, [http://genome-test. | | 999, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2&position=GL397299:16863535-16865632 GL397299:16863535-16865632] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=nomLeu2 plot nomLeu2] | ||
|- | |- | ||
| | | 344 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000146795.3/ GCA_000146795.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000146795.3/ GCA_000146795.3] | ||
| tbd | | tbd | ||
Line 4,085: | Line 4,044: | ||
| style='text-align:right'| 141 | | style='text-align:right'| 141 | ||
| style='text-align:right'| 220464 | | style='text-align:right'| 220464 | ||
| style='text-align:right'| 519 | | style='text-align:right'| 519 | ||
| style='text-align:right'| 1139552 | | style='text-align:right'| 1139552 | ||
| 999, 100, [http://genome-test. | | 999, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3&position=chr5:41669854-41671951 chr5:41669854-41671951] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=nomLeu3 plot nomLeu3] | ||
|- | |- | ||
| | | 345 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=notCor1 notCor1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000735185.1/ GCF_000735185.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000735185.1/ GCF_000735185.1] | ||
| Celera Assembler v. 7.0 | | Celera Assembler v. 7.0 | ||
Line 4,099: | Line 4,057: | ||
| style='text-align:right'| 91.5 | | style='text-align:right'| 91.5 | ||
| style='text-align:right'| 17942 | | style='text-align:right'| 17942 | ||
| style='text-align:right'| 51 | | style='text-align:right'| 51 | ||
| style='text-align:right'| 21717 | | style='text-align:right'| 21717 | ||
| 407, 1, [http://genome-test. | | 407, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=notCor1&position=KL665414:596304-597118 KL665414:596304-597118] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=notCor1 plot notCor1] | ||
|- | |- | ||
| | | 346 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| ochPri0 | | style='text-align:center;'| ochPri0 | ||
Line 4,113: | Line 4,070: | ||
| style='text-align:right'| 101 | | style='text-align:right'| 101 | ||
| style='text-align:right'| 138948 | | style='text-align:right'| 138948 | ||
| style='text-align:right'| 1065 | | style='text-align:right'| 1065 | ||
| style='text-align:right'| 1840608 | | style='text-align:right'| 1840608 | ||
| 994, 100, [http://genome-test. | | 994, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ochPri0&position=GeneScaffold_4726:276480-278567 GeneScaffold_4726:276480-278567] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ochPri0 plot ochPri0] | ||
|- | |- | ||
| | | 347 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000164825.1/ GCA_000164825.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000164825.1/ GCA_000164825.1] | ||
| tbd | | tbd | ||
Line 4,127: | Line 4,083: | ||
| style='text-align:right'| 55 | | style='text-align:right'| 55 | ||
| style='text-align:right'| 35317 | | style='text-align:right'| 35317 | ||
| style='text-align:right'| 1365 | | style='text-align:right'| 1365 | ||
| style='text-align:right'| 1110261 | | style='text-align:right'| 1110261 | ||
| 967, 100, [http://genome-test. | | 967, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ochPri2&position=scaffold_3914:61889-63922 scaffold_3914:61889-63922] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ochPri2 plot ochPri2] | ||
|- | |- | ||
| | | 348 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000292845.1/ GCF_000292845.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000292845.1/ GCF_000292845.1] | ||
| Allpaths v. R41206 | | Allpaths v. R41206 | ||
Line 4,141: | Line 4,096: | ||
| style='text-align:right'| 69 | | style='text-align:right'| 69 | ||
| style='text-align:right'| 148238 | | style='text-align:right'| 148238 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 499781 | | style='text-align:right'| 499781 | ||
| 890, 100, [http://genome-test. | | 890, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ochPri3&position=JH802177:1348834-1350713 JH802177:1348834-1350713] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ochPri3 plot ochPri3] | ||
|- | |- | ||
| | | 349 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000260255.1/ GCF_000260255.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000260255.1/ GCF_000260255.1] | ||
| allpaths v. R40507 LITTLE_HELPS_BIG=False | | allpaths v. R40507 LITTLE_HELPS_BIG=False | ||
Line 4,155: | Line 4,109: | ||
| style='text-align:right'| 68 | | style='text-align:right'| 68 | ||
| style='text-align:right'| 231489 | | style='text-align:right'| 231489 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 464548 | | style='text-align:right'| 464548 | ||
| 985, 100, [http://genome-test. | | 985, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=octDeg1&position=JH651571:12809669-12811738 JH651571:12809669-12811738] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=octDeg1 plot octDeg1] | ||
|- | |- | ||
| | | 350 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ GCA_000321225.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ GCA_000321225.1] | ||
| AllPaths v. 41070; Atlas-link v. 1.0; Atlas-gapfill v. 2.2 | | AllPaths v. 41070; Atlas-link v. 1.0; Atlas-gapfill v. 2.2 | ||
Line 4,169: | Line 4,122: | ||
| style='text-align:right'| 68 | | style='text-align:right'| 68 | ||
| style='text-align:right'| 180258 | | style='text-align:right'| 180258 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 263661 | | style='text-align:right'| 263661 | ||
| 970, 50, [http://genome-test. | | 970, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1&position=KB229427:1083192-1085181 KB229427:1083192-1085181] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=odoRosDiv1 plot odoRosDiv1] | ||
|- | |- | ||
| | | 351 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000499405.1/ GCA_000499405.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000499405.1/ GCA_000499405.1] | ||
| tbd | | tbd | ||
Line 4,183: | Line 4,135: | ||
| style='text-align:right'| 89.5 | | style='text-align:right'| 89.5 | ||
| style='text-align:right'| 2046 | | style='text-align:right'| 2046 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 18211 | | style='text-align:right'| 18211 | ||
| 739, 1, [http://genome-test. | | 739, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oncVol1&position=HG738137v1:12037947-12039425 HG738137v1:12037947-12039425] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oncVol1 plot oncVol1] | ||
|- | |- | ||
| | | 352 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1 opiHoa1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000692075.1/ GCF_000692075.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000692075.1/ GCF_000692075.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,197: | Line 4,148: | ||
| style='text-align:right'| 170.5 | | style='text-align:right'| 170.5 | ||
| style='text-align:right'| 23360 | | style='text-align:right'| 23360 | ||
| style='text-align:right'| 1723.5 | | style='text-align:right'| 1723.5 | ||
| style='text-align:right'| 216549 | | style='text-align:right'| 216549 | ||
| 855, 28, [http://genome-test. | | 855, 28, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1&position=KK733898:82987-84724 KK733898:82987-84724] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=opiHoa1 plot opiHoa1] | ||
|- | |- | ||
| | | 353 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000331955.2/ GCF_000331955.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000331955.2/ GCF_000331955.2] | ||
| AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2 | | AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2 | ||
Line 4,211: | Line 4,161: | ||
| style='text-align:right'| 66 | | style='text-align:right'| 66 | ||
| style='text-align:right'| 181922 | | style='text-align:right'| 181922 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 357696 | | style='text-align:right'| 357696 | ||
| 943, 50, [http://genome-test. | | 943, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1&position=NW_004438742v1:126518-128453 NW_004438742v1:126518-128453] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=orcOrc1 plot orcOrc1] | ||
|- | |- | ||
| | | 354 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,225: | Line 4,174: | ||
| style='text-align:right'| 93 | | style='text-align:right'| 93 | ||
| style='text-align:right'| 208888 | | style='text-align:right'| 208888 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 734264 | | style='text-align:right'| 734264 | ||
| 969, 20, [http://genome-test. | | 969, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oreNil1&position=GL831201:3474999-3476956 GL831201:3474999-3476956] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oreNil1 plot oreNil1] | ||
|- | |- | ||
| | | 356 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002275.2/ GCF_000002275.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002275.2/ GCF_000002275.2] | ||
| tbd | | tbd | ||
Line 4,239: | Line 4,187: | ||
| style='text-align:right'| 49 | | style='text-align:right'| 49 | ||
| style='text-align:right'| 70053 | | style='text-align:right'| 70053 | ||
| style='text-align:right'| 103 | | style='text-align:right'| 103 | ||
| style='text-align:right'| 148119 | | style='text-align:right'| 148119 | ||
| 718, 10, [http://genome-test. | | 718, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ornAna1&position=Contig3645:38619-40064 Contig3645:38619-40064] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ornAna1 plot ornAna1] | ||
|- | |- | ||
| | | 357 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 ornAna2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000002275.2/ GCA_000002275.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000002275.2/ GCA_000002275.2] | ||
| tbd | | tbd | ||
Line 4,253: | Line 4,200: | ||
| style='text-align:right'| 49 | | style='text-align:right'| 49 | ||
| style='text-align:right'| 70053 | | style='text-align:right'| 70053 | ||
| style='text-align:right'| 103 | | style='text-align:right'| 103 | ||
| style='text-align:right'| 148119 | | style='text-align:right'| 148119 | ||
| 718, 10, [http://genome-test. | | 718, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ornAna2&position=chrUn_DS182721v1:38619-40064 chrUn_DS182721v1:38619-40064] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ornAna2 plot ornAna2] | ||
|- | |- | ||
| | | 358 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000298275.1/ GCF_000298275.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000298275.1/ GCF_000298275.1] | ||
| allpaths v. R40776 LITTLE_HELPS_BIG=False | | allpaths v. R40776 LITTLE_HELPS_BIG=False | ||
Line 4,267: | Line 4,213: | ||
| style='text-align:right'| 65 | | style='text-align:right'| 65 | ||
| style='text-align:right'| 293465 | | style='text-align:right'| 293465 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 691489 | | style='text-align:right'| 691489 | ||
| 998, 100, [http://genome-test. | | 998, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1&position=JH863829:9451309-9453404 JH863829:9451309-9453404] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oryAfe1 plot oryAfe1] | ||
|- | |- | ||
| | | 359 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryCun1 oryCun1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,281: | Line 4,226: | ||
| style='text-align:right'| 278.5 | | style='text-align:right'| 278.5 | ||
| style='text-align:right'| 44566 | | style='text-align:right'| 44566 | ||
| style='text-align:right'| 462.5 | | style='text-align:right'| 462.5 | ||
| style='text-align:right'| 91832 | | style='text-align:right'| 91832 | ||
| 978, 100, [http://genome-test. | | 978, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryCun1&position=scaffold_172390:787-2842 scaffold_172390:787-2842] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oryCun1 plot oryCun1] | ||
|- | |- | ||
| | | 360 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000003625.3/ GCF_000003625.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000003625.3/ GCF_000003625.3] | ||
| tbd | | tbd | ||
Line 4,295: | Line 4,239: | ||
| style='text-align:right'| 44.5 | | style='text-align:right'| 44.5 | ||
| style='text-align:right'| 836 | | style='text-align:right'| 836 | ||
| style='text-align:right'| 446 | | style='text-align:right'| 446 | ||
| style='text-align:right'| 9055 | | style='text-align:right'| 9055 | ||
| 327, 185, [http://genome-test. | | 327, 185, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryCun2&position=chr13:6520795-6521633 chr13:6520795-6521633] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oryCun2 plot oryCun2] | ||
|- | |- | ||
| | | 361 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryLat1 oryLat1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,309: | Line 4,252: | ||
| style='text-align:right'| 144 | | style='text-align:right'| 144 | ||
| style='text-align:right'| 25310 | | style='text-align:right'| 25310 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 215389 | | style='text-align:right'| 215389 | ||
| 561, 10, [http://genome-test. | | 561, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryLat1&position=chrUn:20300712-20301843 chrUn:20300712-20301843] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oryLat1 plot oryLat1] | ||
|- | |- | ||
| | | 362 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,323: | Line 4,265: | ||
| style='text-align:right'| 144 | | style='text-align:right'| 144 | ||
| style='text-align:right'| 25310 | | style='text-align:right'| 25310 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 253399 | | style='text-align:right'| 253399 | ||
| 445, 10, [http://genome-test. | | 445, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oryLat2&position=ultracontig221:437957-438856 ultracontig221:437957-438856] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oryLat2 plot oryLat2] | ||
|- | |- | ||
| | | 364 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181295.1/ GCF_000181295.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181295.1/ GCF_000181295.1] | ||
| ALLPATHS-LG v. R35710 | | ALLPATHS-LG v. R35710 | ||
Line 4,337: | Line 4,278: | ||
| style='text-align:right'| 86 | | style='text-align:right'| 86 | ||
| style='text-align:right'| 332700 | | style='text-align:right'| 332700 | ||
| style='text-align:right'| 39 | | style='text-align:right'| 39 | ||
| style='text-align:right'| 663694 | | style='text-align:right'| 663694 | ||
| 985, 20, [http://genome-test. | | 985, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=otoGar3&position=GL873641:2218538-2220527 GL873641:2218538-2220527] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=otoGar3 plot otoGar3] | ||
|- | |- | ||
| | | 365 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000005525.1/ GCA_000005525.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000005525.1/ GCA_000005525.1] | ||
| tbd | | tbd | ||
Line 4,351: | Line 4,291: | ||
| style='text-align:right'| 53 | | style='text-align:right'| 53 | ||
| style='text-align:right'| 394316 | | style='text-align:right'| 394316 | ||
| style='text-align:right'| 37 | | style='text-align:right'| 37 | ||
| style='text-align:right'| 1966190 | | style='text-align:right'| 1966190 | ||
| 264, 1, [http://genome-test. | | 264, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oviAri1&position=chr15:8985870-8986398 chr15:8985870-8986398] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oviAri1 plot oviAri1] | ||
|- | |- | ||
| | | 366 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000298735.1/ GCF_000298735.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000298735.1/ GCF_000298735.1] | ||
| SOAPdenovo v. 1.03 | | SOAPdenovo v. 1.03 | ||
Line 4,365: | Line 4,304: | ||
| style='text-align:right'| 193 | | style='text-align:right'| 193 | ||
| style='text-align:right'| 51933 | | style='text-align:right'| 51933 | ||
| style='text-align:right'| 215 | | style='text-align:right'| 215 | ||
| style='text-align:right'| 178445 | | style='text-align:right'| 178445 | ||
| 46, 3, [http://genome-test. | | 46, 3, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oviAri3&position=chr3:3466521-3466615 chr3:3466521-3466615] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oviAri3 plot oviAri3] | ||
|- | |- | ||
| | | 367 | ||
| 2015 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oviAri4 oviAri4] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000298735.2/ GCF_000298735.2] | |||
| SOAPdenovo v. 1.03; PBJelly2 v. 14.9.9 | |||
| style='text-align:right'| 123 | |||
| style='text-align:right'| 285 | |||
| style='text-align:right'| 48608 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 99192 | |||
| 46, 3, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oviAri4&position=chr3:3435119-3435213 chr3:3435119-3435213] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oviAri4 plot oviAri4] | |||
|- | |||
| 368 | |||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oxyTri2 oxyTri2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,379: | Line 4,330: | ||
| style='text-align:right'| 37 | | style='text-align:right'| 37 | ||
| style='text-align:right'| 30028 | | style='text-align:right'| 30028 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 25856 | | style='text-align:right'| 25856 | ||
| 186, 1, [http://genome-test. | | 186, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oxyTri2&position=chrMACsb310:15510646-15511018 chrMACsb310:15510646-15511018] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=oxyTri2 plot oxyTri2] | ||
|- | |- | ||
| | | 369 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000400835.1/ GCF_000400835.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000400835.1/ GCF_000400835.1] | ||
| SOAPdenovo v. 2.1 | | SOAPdenovo v. 2.1 | ||
Line 4,393: | Line 4,343: | ||
| style='text-align:right'| 129 | | style='text-align:right'| 129 | ||
| style='text-align:right'| 65178 | | style='text-align:right'| 65178 | ||
| style='text-align:right'| 1092 | | style='text-align:right'| 1092 | ||
| style='text-align:right'| 702884 | | style='text-align:right'| 702884 | ||
| 628, 10, [http://genome-test. | | 628, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panHod1&position=KE118776:1218541-1219806 KE118776:1218541-1219806] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panHod1 plot panHod1] | ||
|- | |- | ||
| | | 370 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panPan1 panPan1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000258655.1/ GCF_000258655.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000258655.1/ GCF_000258655.1] | ||
| Celera Assembler v. 5.4.3 | | Celera Assembler v. 5.4.3 | ||
Line 4,407: | Line 4,356: | ||
| style='text-align:right'| 133 | | style='text-align:right'| 133 | ||
| style='text-align:right'| 11209 | | style='text-align:right'| 11209 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 22114 | | style='text-align:right'| 22114 | ||
| 33, 1, [http://genome-test. | | 33, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panPan1&position=JH650468:842203-842269 JH650468:842203-842269] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panPan1 plot panPan1] | ||
|- | |- | ||
| | | 371 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panPan2 panPan2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,421: | Line 4,369: | ||
| style='text-align:right'| 160 | | style='text-align:right'| 160 | ||
| style='text-align:right'| 13388 | | style='text-align:right'| 13388 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 1045522 | | style='text-align:right'| 1045522 | ||
| 35, 1, [http://genome-test. | | 35, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panPan2&position=chr4:127787143-127787213 chr4:127787143-127787213] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panPan2 plot panPan2] | ||
|- | |- | ||
| | | 372 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000341325.1/ GCA_000341325.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000341325.1/ GCA_000341325.1] | ||
| Velvet v. 1.2.07 | | Velvet v. 1.2.07 | ||
Line 4,435: | Line 4,382: | ||
| style='text-align:right'| 56 | | style='text-align:right'| 56 | ||
| style='text-align:right'| 6626 | | style='text-align:right'| 6626 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 3069 | | style='text-align:right'| 3069 | ||
| 62, 10, [http://genome-test. | | 62, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panRed1&position=KB454926:42673-42806 KB454926:42673-42806] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panRed1 plot panRed1] | ||
|- | |- | ||
| | | 373 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTig1 panTig1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000464555.1/ GCF_000464555.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000464555.1/ GCF_000464555.1] | ||
| SOAPdenovo v. 08-Jul-2011 | | SOAPdenovo v. 08-Jul-2011 | ||
Line 4,449: | Line 4,395: | ||
| style='text-align:right'| 111 | | style='text-align:right'| 111 | ||
| style='text-align:right'| 12591 | | style='text-align:right'| 12591 | ||
| style='text-align:right'| 700 | | style='text-align:right'| 700 | ||
| style='text-align:right'| 69429 | | style='text-align:right'| 69429 | ||
| 398, 9, [http://genome-test. | | 398, 9, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTig1&position=KE721804:6447970-6448774 KE721804:6447970-6448774] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panTig1 plot panTig1] | ||
|- | |- | ||
| | | 374 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro1 panTro1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,463: | Line 4,408: | ||
| style='text-align:right'| 388 | | style='text-align:right'| 388 | ||
| style='text-align:right'| 2244063 | | style='text-align:right'| 2244063 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 3504041 | | style='text-align:right'| 3504041 | ||
| 998, 100, [http://genome-test. | | 998, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro1&position=chr6:137473031-137475126 chr6:137473031-137475126] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panTro1 plot panTro1] | ||
|- | |- | ||
| | | 375 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro2 panTro2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,477: | Line 4,421: | ||
| style='text-align:right'| 52 | | style='text-align:right'| 52 | ||
| style='text-align:right'| 62006 | | style='text-align:right'| 62006 | ||
| style='text-align:right'| 240 | | style='text-align:right'| 240 | ||
| style='text-align:right'| 238273 | | style='text-align:right'| 238273 | ||
| 717, 10, [http://genome-test. | | 717, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro2&position=chr10_random:5205395-5206838 chr10_random:5205395-5206838] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panTro2 plot panTro2] | ||
|- | |- | ||
| | | 376 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro3 panTro3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,491: | Line 4,434: | ||
| style='text-align:right'| 54 | | style='text-align:right'| 54 | ||
| style='text-align:right'| 44241 | | style='text-align:right'| 44241 | ||
| style='text-align:right'| 238.5 | | style='text-align:right'| 238.5 | ||
| style='text-align:right'| 180280 | | style='text-align:right'| 180280 | ||
| 908, 10, [http://genome-test. | | 908, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro3&position=chr2B:124438762-124440587 chr2B:124438762-124440587] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panTro3 plot panTro3] | ||
|- | |- | ||
| | | 377 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001515.6/ GCF_000001515.6] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001515.6/ GCF_000001515.6] | ||
| tbd | | tbd | ||
Line 4,505: | Line 4,447: | ||
| style='text-align:right'| 54 | | style='text-align:right'| 54 | ||
| style='text-align:right'| 44241 | | style='text-align:right'| 44241 | ||
| style='text-align:right'| 238.5 | | style='text-align:right'| 238.5 | ||
| style='text-align:right'| 180280 | | style='text-align:right'| 180280 | ||
| 908, 10, [http://genome-test. | | 908, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro4&position=chr2B:124438762-124440587 chr2B:124438762-124440587] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panTro4 plot panTro4] | ||
|- | |- | ||
| | | 378 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro5 panTro5] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001515.7/ GCF_000001515.7] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001515.7/ GCF_000001515.7] | ||
| DiscoVar v. 51280; PBJelly v. 14.9.9 | | DiscoVar v. 51280; PBJelly v. 14.9.9 | ||
Line 4,519: | Line 4,460: | ||
| style='text-align:right'| 199 | | style='text-align:right'| 199 | ||
| style='text-align:right'| 537385 | | style='text-align:right'| 537385 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 3625772 | | style='text-align:right'| 3625772 | ||
| 199, 10, [http://genome-test. | | 199, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro5&position=chr12_NW_015974005v1_random:1130-1537 chr12_NW_015974005v1_random:1130-1537] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panTro5 plot panTro5] | ||
|- | |- | ||
| | | 379 | ||
| 2018 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro6 panTro6] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_002880755.1/ GCF_002880755.1] | |||
| tbd | |||
| style='text-align:right'| 5 | |||
| style='text-align:right'| 667 | |||
| style='text-align:right'| 3499 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 18496 | |||
| 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=panTro6&position=chr8:127452460-127454559 chr8:127452460-127454559] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=panTro6 plot panTro6] | |||
|- | |||
| 380 | |||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000264685.1/ GCF_000264685.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000264685.1/ GCF_000264685.1] | ||
| CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0 | | CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0 | ||
Line 4,533: | Line 4,486: | ||
| style='text-align:right'| 138 | | style='text-align:right'| 138 | ||
| style='text-align:right'| 144060 | | style='text-align:right'| 144060 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 96682 | | style='text-align:right'| 96682 | ||
| 46, 1, [http://genome-test. | | 46, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=papAnu2&position=chr4:20965571-20965663 chr4:20965571-20965663] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=papAnu2 plot papAnu2] | ||
|- | |- | ||
| | | 381 | ||
| 2008 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=papAnu3 papAnu3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000264685.2/ GCF_000264685.2] | ||
| tbd | | CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0 | ||
| style='text-align:right'| 22041 | | style='text-align:right'| 727 | ||
| style='text-align:right'| 56 | | style='text-align:right'| 138 | ||
| style='text-align:right'| 144060 | |||
| style='text-align:right'| 50 | |||
| style='text-align:right'| 96682 | |||
| 46, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=papAnu3&position=chr4:20965571-20965663 chr4:20965571-20965663] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=papAnu3 plot papAnu3] | |||
|- | |||
| 382 | |||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=papAnu4 papAnu4] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000264685.3/ GCF_000264685.3] | |||
| CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0; PBJelly2 v. 14.9.9; Pilon v. 1.18 | |||
| style='text-align:right'| 368 | |||
| style='text-align:right'| 238.5 | |||
| style='text-align:right'| 95783 | |||
| style='text-align:right'| 50 | |||
| style='text-align:right'| 84582 | |||
| 703, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=papAnu4&position=chrUn_NW_018824177v1:2651-4066 chrUn_NW_018824177v1:2651-4066] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=papAnu4 plot papAnu4] | |||
|- | |||
| 383 | |||
| 2008 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 22041 | |||
| style='text-align:right'| 56 | |||
| style='text-align:right'| 1338445 | | style='text-align:right'| 1338445 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 2303596 | | style='text-align:right'| 2303596 | ||
| 376, 50, [http://genome-test. | | 376, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=papHam1&position=scaffold4259:86690-87491 scaffold4259:86690-87491] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=papHam1 plot papHam1] | ||
|- | |- | ||
| | | 384 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pelCri1 pelCri1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687375.1/ GCF_000687375.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687375.1/ GCF_000687375.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,561: | Line 4,538: | ||
| style='text-align:right'| 72 | | style='text-align:right'| 72 | ||
| style='text-align:right'| 517 | | style='text-align:right'| 517 | ||
| style='text-align:right'| 186 | | style='text-align:right'| 186 | ||
| style='text-align:right'| 808 | | style='text-align:right'| 808 | ||
| 386, 173, [http://genome-test. | | 386, 173, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pelCri1&position=KK471910:16412-17356 KK471910:16412-17356] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=pelCri1 plot pelCri1] | ||
|- | |- | ||
| | | 385 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pelSin1 pelSin1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000230535.1/ GCF_000230535.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000230535.1/ GCF_000230535.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 4,575: | Line 4,551: | ||
| style='text-align:right'| 138 | | style='text-align:right'| 138 | ||
| style='text-align:right'| 35062 | | style='text-align:right'| 35062 | ||
| style='text-align:right'| 411.5 | | style='text-align:right'| 411.5 | ||
| style='text-align:right'| 167243 | | style='text-align:right'| 167243 | ||
| 398, 10, [http://genome-test. | | 398, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pelSin1&position=JH212629:287260-288065 JH212629:287260-288065] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=pelSin1 plot pelSin1] | ||
|- | |- | ||
| | | 386 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=perManBai1 perManBai1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000500345.1/ GCF_000500345.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000500345.1/ GCF_000500345.1] | ||
| Newbler v. 2.3 and 2.5; AllPaths v. 41070; ATLAS-gapfill v. 2.2; ATLAS-link v. 1.0 | | Newbler v. 2.3 and 2.5; AllPaths v. 41070; ATLAS-gapfill v. 2.2; ATLAS-link v. 1.0 | ||
Line 4,589: | Line 4,564: | ||
| style='text-align:right'| 80 | | style='text-align:right'| 80 | ||
| style='text-align:right'| 846184 | | style='text-align:right'| 846184 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 1552640 | | style='text-align:right'| 1552640 | ||
| 1000, 50, [http://genome-test. | | 1000, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=perManBai1&position=KI615759:2266069-2268118 KI615759:2266069-2268118] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=perManBai1 plot perManBai1] | ||
|- | |- | ||
| | | 387 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,603: | Line 4,577: | ||
| style='text-align:right'| 47 | | style='text-align:right'| 47 | ||
| style='text-align:right'| 48234 | | style='text-align:right'| 48234 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 42185 | | style='text-align:right'| 42185 | ||
| 746, 10, [http://genome-test. | | 746, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=petMar1&position=Contig3178:18125-19626 Contig3178:18125-19626] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=petMar1 plot petMar1] | ||
|- | |- | ||
| | | 388 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000148955.1/ GCA_000148955.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000148955.1/ GCA_000148955.1] | ||
| Arachne v. 3.2 | | Arachne v. 3.2 | ||
Line 4,617: | Line 4,590: | ||
| style='text-align:right'| 86 | | style='text-align:right'| 86 | ||
| style='text-align:right'| 5681 | | style='text-align:right'| 5681 | ||
| style='text-align:right'| 732 | | style='text-align:right'| 732 | ||
| style='text-align:right'| 39461 | | style='text-align:right'| 39461 | ||
| 617, 100, [http://genome-test. | | 617, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=petMar2&position=GL479790:15647-16980 GL479790:15647-16980] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=petMar2 plot petMar2] | ||
|- | |||
| 389 | |||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=petMar3 petMar3] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 40 | |||
| style='text-align:right'| 242.5 | |||
| style='text-align:right'| 11527 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 119063 | |||
| 718, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=petMar3&position=PIZI01000010v1:16691860-16693296 PIZI01000010v1:16691860-16693296] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=petMar3 plot petMar3] | |||
|- | |- | ||
| | | 390 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=phaCar1 phaCar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708925.1/ GCF_000708925.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708925.1/ GCF_000708925.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,631: | Line 4,616: | ||
| style='text-align:right'| 206 | | style='text-align:right'| 206 | ||
| style='text-align:right'| 412 | | style='text-align:right'| 412 | ||
| style='text-align:right'| 79 | | style='text-align:right'| 79 | ||
| style='text-align:right'| 158 | | style='text-align:right'| 158 | ||
| 261, 100, [http://genome-test. | | 261, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=phaCar1&position=KL416242:66648-67269 KL416242:66648-67269] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=phaCar1 plot phaCar1] | ||
|- | |- | ||
| | | 391 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=phaLep1 phaLep1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687285.1/ GCF_000687285.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687285.1/ GCF_000687285.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,645: | Line 4,629: | ||
| style='text-align:right'| 179 | | style='text-align:right'| 179 | ||
| style='text-align:right'| 2930 | | style='text-align:right'| 2930 | ||
| style='text-align:right'| 310 | | style='text-align:right'| 310 | ||
| style='text-align:right'| 4227 | | style='text-align:right'| 4227 | ||
| 343, 85, [http://genome-test. | | 343, 85, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=phaLep1&position=KK448216:3226-3996 KK448216:3226-3996] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=phaLep1 plot phaLep1] | ||
|- | |- | ||
| | | 392 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=phoRub1 phoRub1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000687265.1/ GCA_000687265.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000687265.1/ GCA_000687265.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,659: | Line 4,642: | ||
| style='text-align:right'| 288.5 | | style='text-align:right'| 288.5 | ||
| style='text-align:right'| 1016 | | style='text-align:right'| 1016 | ||
| style='text-align:right'| 195.5 | | style='text-align:right'| 195.5 | ||
| style='text-align:right'| 823 | | style='text-align:right'| 823 | ||
| 373, 83, [http://genome-test. | | 373, 83, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=phoRub1&position=KK425162:48893-49721 KK425162:48893-49721] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=phoRub1 plot phoRub1] | ||
|- | |- | ||
| | | 393 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=phyCat1 phyCat1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000472045.1/ GCF_000472045.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000472045.1/ GCF_000472045.1] | ||
| AllPaths-LG v. January 2013 | | AllPaths-LG v. January 2013 | ||
Line 4,673: | Line 4,655: | ||
| style='text-align:right'| 82.5 | | style='text-align:right'| 82.5 | ||
| style='text-align:right'| 86555 | | style='text-align:right'| 86555 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 130377 | | style='text-align:right'| 130377 | ||
| 1000, 1, [http://genome-test. | | 1000, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=phyCat1&position=KI402232:538054-540054 KI402232:538054-540054] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=phyCat1 plot phyCat1] | ||
|- | |- | ||
| | | 394 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=picPub1 picPub1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699005.1/ GCF_000699005.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699005.1/ GCF_000699005.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,687: | Line 4,668: | ||
| style='text-align:right'| 83 | | style='text-align:right'| 83 | ||
| style='text-align:right'| 12175 | | style='text-align:right'| 12175 | ||
| style='text-align:right'| 970 | | style='text-align:right'| 970 | ||
| style='text-align:right'| 106482 | | style='text-align:right'| 106482 | ||
| 111, 28, [http://genome-test. | | 111, 28, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=picPub1&position=KL217012:74310-74559 KL217012:74310-74559] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=picPub1 plot picPub1] | ||
|- | |- | ||
| | | 395 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=poeFor1 poeFor1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000485575.1/ GCF_000485575.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000485575.1/ GCF_000485575.1] | ||
| AllPaths-LG v. July 2013 | | AllPaths-LG v. July 2013 | ||
Line 4,701: | Line 4,681: | ||
| style='text-align:right'| 75 | | style='text-align:right'| 75 | ||
| style='text-align:right'| 84492 | | style='text-align:right'| 84492 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 328834 | | style='text-align:right'| 328834 | ||
| 972, 1, [http://genome-test. | | 972, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=poeFor1&position=KI520524:847-2791 KI520524:847-2791] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=poeFor1 plot poeFor1] | ||
|- | |- | ||
| | | 396 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=poeRet1 poeRet1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,715: | Line 4,694: | ||
| style='text-align:right'| 87 | | style='text-align:right'| 87 | ||
| style='text-align:right'| 157426 | | style='text-align:right'| 157426 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 421252 | | style='text-align:right'| 421252 | ||
| 988, 1, [http://genome-test. | | 988, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=poeRet1&position=chrLG12:26078504-26080480 chrLG12:26078504-26080480] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=poeRet1 plot poeRet1] | ||
|- | |- | ||
| | | 397 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| ponAbe1 | | style='text-align:center;'| ponAbe1 | ||
Line 4,729: | Line 4,707: | ||
| style='text-align:right'| 40 | | style='text-align:right'| 40 | ||
| style='text-align:right'| 90824 | | style='text-align:right'| 90824 | ||
| style='text-align:right'| 133.5 | | style='text-align:right'| 133.5 | ||
| style='text-align:right'| 275853 | | style='text-align:right'| 275853 | ||
| 662, 10, [http://genome-test. | | 662, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ponAbe1&position=Contig208:1185633-1186966 Contig208:1185633-1186966] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ponAbe1 plot ponAbe1] | ||
|- | |- | ||
| | | 398 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,743: | Line 4,720: | ||
| style='text-align:right'| 54 | | style='text-align:right'| 54 | ||
| style='text-align:right'| 444541 | | style='text-align:right'| 444541 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 829820 | | style='text-align:right'| 829820 | ||
| 769, 1, [http://genome-test. | | 769, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2&position=chr11:46659515-46661053 chr11:46659515-46661053] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ponAbe2 plot ponAbe2] | ||
|- | |- | ||
| | | 400 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,757: | Line 4,733: | ||
| style='text-align:right'| 121 | | style='text-align:right'| 121 | ||
| style='text-align:right'| 12100 | | style='text-align:right'| 12100 | ||
| style='text-align:right'| 1773 | | style='text-align:right'| 1773 | ||
| style='text-align:right'| 95166 | | style='text-align:right'| 95166 | ||
| 181, 38, [http://genome-test. | | 181, 38, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=priExs1&position=scaffold470:42605-43004 scaffold470:42605-43004] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=priExs1 plot priExs1] | ||
|- | |- | ||
| | | 401 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=priPac1 priPac1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,771: | Line 4,746: | ||
| style='text-align:right'| 49 | | style='text-align:right'| 49 | ||
| style='text-align:right'| 10688 | | style='text-align:right'| 10688 | ||
| style='text-align:right'| 209 | | style='text-align:right'| 209 | ||
| style='text-align:right'| 31254 | | style='text-align:right'| 31254 | ||
| 90, 1, [http://genome-test. | | 90, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=priPac1&position=chrUn:114913780-114913960 chrUn:114913780-114913960] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=priPac1 plot priPac1] | ||
|- | |- | ||
| | | 403 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,785: | Line 4,759: | ||
| style='text-align:right'| 49.5 | | style='text-align:right'| 49.5 | ||
| style='text-align:right'| 13153 | | style='text-align:right'| 13153 | ||
| style='text-align:right'| 274.5 | | style='text-align:right'| 274.5 | ||
| style='text-align:right'| 50322 | | style='text-align:right'| 50322 | ||
| 90, 1, [http://genome-test. | | 90, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=priPac3&position=Ppa_Contig2432:805-985 Ppa_Contig2432:805-985] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=priPac3 plot priPac3] | ||
|- | |- | ||
| | | 404 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000152225.1/ GCA_000152225.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000152225.1/ GCA_000152225.1] | ||
| Arachne v. before 2009 | | Arachne v. before 2009 | ||
Line 4,799: | Line 4,772: | ||
| style='text-align:right'| 38 | | style='text-align:right'| 38 | ||
| style='text-align:right'| 5205 | | style='text-align:right'| 5205 | ||
| style='text-align:right'| 534.5 | | style='text-align:right'| 534.5 | ||
| style='text-align:right'| 65619 | | style='text-align:right'| 65619 | ||
| 53, 100, [http://genome-test. | | 53, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=proCap1&position=scaffold_8867:32393-32598 scaffold_8867:32393-32598] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=proCap1 plot proCap1] | ||
|- | |- | ||
| | | 405 | ||
| 2015 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=proCoq1 proCoq1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000956105.1/ GCF_000956105.1] | |||
| AllPathsLG v. R43839; Atlas Link v. 1.0; Atlas Gapfill v. 2.2 | |||
| style='text-align:right'| 1491 | |||
| style='text-align:right'| 92 | |||
| style='text-align:right'| 191552 | |||
| style='text-align:right'| 50 | |||
| style='text-align:right'| 427249 | |||
| 970, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=proCoq1&position=NW_012149019v1:36737-38726 NW_012149019v1:36737-38726] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=proCoq1 plot proCoq1] | |||
|- | |||
| 406 | |||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000331425.1/ GCF_000331425.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000331425.1/ GCF_000331425.1] | ||
| SOAPdenovo v. 1.5 | | SOAPdenovo v. 1.5 | ||
Line 4,813: | Line 4,798: | ||
| style='text-align:right'| 142 | | style='text-align:right'| 142 | ||
| style='text-align:right'| 173055 | | style='text-align:right'| 173055 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 547111 | | style='text-align:right'| 547111 | ||
| 1000, 10, [http://genome-test. | | 1000, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pseHum1&position=KB221227:5459003-5461012 KB221227:5459003-5461012] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=pseHum1 plot pseHum1] | ||
|- | |- | ||
| | | 407 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ GCA_000325575.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ GCA_000325575.1] | ||
| SOAPdenovo v. 1.06 | | SOAPdenovo v. 1.06 | ||
Line 4,827: | Line 4,811: | ||
| style='text-align:right'| 127 | | style='text-align:right'| 127 | ||
| style='text-align:right'| 19728 | | style='text-align:right'| 19728 | ||
| style='text-align:right'| 1023 | | style='text-align:right'| 1023 | ||
| style='text-align:right'| 161616 | | style='text-align:right'| 161616 | ||
| 421, 16, [http://genome-test. | | 421, 16, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pteAle1&position=KB031157:14150143-14151000 KB031157:14150143-14151000] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=pteAle1 plot pteAle1] | ||
|- | |- | ||
| | | 408 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pteGut1 pteGut1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699245.1/ GCF_000699245.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699245.1/ GCF_000699245.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,841: | Line 4,824: | ||
| style='text-align:right'| 282 | | style='text-align:right'| 282 | ||
| style='text-align:right'| 282 | | style='text-align:right'| 282 | ||
| style='text-align:right'| 720 | | style='text-align:right'| 720 | ||
| style='text-align:right'| 720 | | style='text-align:right'| 720 | ||
| 282, 720, [http://genome-test. | | 282, 720, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pteGut1&position=KL237369:530-1813 KL237369:530-1813] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=pteGut1 plot pteGut1] | ||
|- | |- | ||
| | | 409 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ptePar1 ptePar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000465405.1/ GCA_000465405.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000465405.1/ GCA_000465405.1] | ||
| CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | ||
Line 4,855: | Line 4,837: | ||
| style='text-align:right'| 31 | | style='text-align:right'| 31 | ||
| style='text-align:right'| 102 | | style='text-align:right'| 102 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 3 | | style='text-align:right'| 3 | ||
| 40, 1, [http://genome-test. | | 40, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ptePar1&position=KE827285:1815-1895 KE827285:1815-1895] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ptePar1 plot ptePar1] | ||
|- | |- | ||
| | | 410 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000151845.1/ GCA_000151845.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000151845.1/ GCA_000151845.1] | ||
| tbd | | tbd | ||
Line 4,869: | Line 4,850: | ||
| style='text-align:right'| 43.5 | | style='text-align:right'| 43.5 | ||
| style='text-align:right'| 9173 | | style='text-align:right'| 9173 | ||
| style='text-align:right'| 301.5 | | style='text-align:right'| 301.5 | ||
| style='text-align:right'| 27212 | | style='text-align:right'| 27212 | ||
| 971, 100, [http://genome-test. | | 971, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pteVam1&position=scaffold_4327:120126-122167 scaffold_4327:120126-122167] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=pteVam1 plot pteVam1] | ||
|- | |- | ||
| | | 411 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239375.1/ GCF_000239375.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239375.1/ GCF_000239375.1] | ||
| ALLPATHS-LG v. R37016 | | ALLPATHS-LG v. R37016 | ||
Line 4,883: | Line 4,863: | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 242736 | | style='text-align:right'| 242736 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 332782 | | style='text-align:right'| 332782 | ||
| 992, 20, [http://genome-test. | | 992, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=punNye1&position=JH419321:67178-69181 JH419321:67178-69181] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=punNye1 plot punNye1] | ||
|- | |- | ||
| | | 412 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pygAde1 pygAde1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000699105.1/ GCA_000699105.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000699105.1/ GCA_000699105.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 4,897: | Line 4,876: | ||
| style='text-align:right'| 113 | | style='text-align:right'| 113 | ||
| style='text-align:right'| 7740 | | style='text-align:right'| 7740 | ||
| style='text-align:right'| 1160.5 | | style='text-align:right'| 1160.5 | ||
| style='text-align:right'| 93198 | | style='text-align:right'| 93198 | ||
| 78, 17, [http://genome-test. | | 78, 17, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pygAde1&position=KL224983:2418932-2419104 KL224983:2418932-2419104] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=pygAde1 plot pygAde1] | ||
|- | |- | ||
| | | 413 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1 pytBiv1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000186305.1/ GCF_000186305.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000186305.1/ GCF_000186305.1] | ||
| Soap deNovo v. March 2012 | | Soap deNovo v. March 2012 | ||
Line 4,911: | Line 4,889: | ||
| style='text-align:right'| 101 | | style='text-align:right'| 101 | ||
| style='text-align:right'| 2315791 | | style='text-align:right'| 2315791 | ||
| style='text-align:right'| 99 | | style='text-align:right'| 99 | ||
| style='text-align:right'| 2845128 | | style='text-align:right'| 2845128 | ||
| 649, 10, [http://genome-test. | | 649, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1&position=KE957835:3697-5004 KE957835:3697-5004] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=pytBiv1 plot pytBiv1] | ||
|- | |- | ||
| | | 418 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rheMac1 rheMac1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 4,925: | Line 4,902: | ||
| style='text-align:right'| 39 | | style='text-align:right'| 39 | ||
| style='text-align:right'| 116369 | | style='text-align:right'| 116369 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 214725 | | style='text-align:right'| 214725 | ||
| 205, 50, [http://genome-test. | | 205, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rheMac1&position=SCAFFOLD120616:17732-18191 SCAFFOLD120616:17732-18191] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rheMac1 plot rheMac1] | ||
|- | |- | ||
| | | 419 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000230795.1/ GCA_000230795.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000230795.1/ GCA_000230795.1] | ||
| SOAPdenovo v. 1.0 | | SOAPdenovo v. 1.0 | ||
Line 4,939: | Line 4,915: | ||
| style='text-align:right'| 192.5 | | style='text-align:right'| 192.5 | ||
| style='text-align:right'| 71777 | | style='text-align:right'| 71777 | ||
| style='text-align:right'| 1140.5 | | style='text-align:right'| 1140.5 | ||
| style='text-align:right'| 887215 | | style='text-align:right'| 887215 | ||
| 949, 27, [http://genome-test. | | 949, 27, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rheMac3&position=chr15:33329332-33331256 chr15:33329332-33331256] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rheMac3 plot rheMac3] | ||
|- | |- | ||
| | | 420 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rheMac8 rheMac8] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000772875.2/ GCF_000772875.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000772875.2/ GCF_000772875.2] | ||
| MaSuRCA v. 1.8.3; PBJelly2 v. 14.9.9 | | MaSuRCA v. 1.8.3; PBJelly2 v. 14.9.9 | ||
Line 4,953: | Line 4,928: | ||
| style='text-align:right'| 99.5 | | style='text-align:right'| 99.5 | ||
| style='text-align:right'| 20122 | | style='text-align:right'| 20122 | ||
| style='text-align:right'| 917 | | style='text-align:right'| 917 | ||
| style='text-align:right'| 437685 | | style='text-align:right'| 437685 | ||
| 823, 20, [http://genome-test. | | 823, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rheMac8&position=chr7:1436259-1437924 chr7:1436259-1437924] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rheMac8 plot rheMac8] | ||
|- | |- | ||
| | | 421 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1 rhiBie1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001698545.1/ GCF_001698545.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001698545.1/ GCF_001698545.1] | ||
| Newbler v. 71; Anytag v. 70; GOBOND v. 69; GapCloser v. 1.12 | | Newbler v. 71; Anytag v. 70; GOBOND v. 69; GapCloser v. 1.12 | ||
Line 4,967: | Line 4,941: | ||
| style='text-align:right'| 228 | | style='text-align:right'| 228 | ||
| style='text-align:right'| 1007049 | | style='text-align:right'| 1007049 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 2148972 | | style='text-align:right'| 2148972 | ||
| 965, 1, [http://genome-test. | | 965, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1&position=NW_016817388v1:689035-690965 NW_016817388v1:689035-690965] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rhiBie1 plot rhiBie1] | ||
|- | |- | ||
| | | 422 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rhiFer1 rhiFer1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000465495.1/ GCA_000465495.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000465495.1/ GCA_000465495.1] | ||
| CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | ||
Line 4,981: | Line 4,954: | ||
| style='text-align:right'| 42.5 | | style='text-align:right'| 42.5 | ||
| style='text-align:right'| 85 | | style='text-align:right'| 85 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 2 | | style='text-align:right'| 2 | ||
| 45, 1, [http://genome-test. | | 45, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rhiFer1&position=KI143993:8550-8640 KI143993:8550-8640] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rhiFer1 plot rhiFer1] | ||
|- | |- | ||
| | | 423 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1 rhiRox1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000769185.1/ GCF_000769185.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000769185.1/ GCF_000769185.1] | ||
| SOAPdenovo v. 2013.04 | | SOAPdenovo v. 2013.04 | ||
Line 4,995: | Line 4,967: | ||
| style='text-align:right'| 158 | | style='text-align:right'| 158 | ||
| style='text-align:right'| 50999 | | style='text-align:right'| 50999 | ||
| style='text-align:right'| 529 | | style='text-align:right'| 529 | ||
| style='text-align:right'| 184770 | | style='text-align:right'| 184770 | ||
| 584, 11, [http://genome-test. | | 584, 11, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1&position=KN296100v1:378785-379963 KN296100v1:378785-379963] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rhiRox1 plot rhiRox1] | ||
|- | |- | ||
| | | 424 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| ricCom1 | | style='text-align:center;'| ricCom1 | ||
Line 5,009: | Line 4,980: | ||
| style='text-align:right'| 332 | | style='text-align:right'| 332 | ||
| style='text-align:right'| 13808 | | style='text-align:right'| 13808 | ||
| style='text-align:right'| 738 | | style='text-align:right'| 738 | ||
| style='text-align:right'| 38675 | | style='text-align:right'| 38675 | ||
| 787, 3, [http://genome-test. | | 787, 3, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ricCom1&position=EQ973819:99412-100988 EQ973819:99412-100988] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ricCom1 plot ricCom1] | ||
|- | |- | ||
| | | 425 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rn3 rn3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,023: | Line 4,993: | ||
| style='text-align:right'| 143 | | style='text-align:right'| 143 | ||
| style='text-align:right'| 146802 | | style='text-align:right'| 146802 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 425043 | | style='text-align:right'| 425043 | ||
| 72, 1, [http://genome-test. | | 72, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rn3&position=chr4:1247786-1247930 chr4:1247786-1247930] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rn3 plot rn3] | ||
|- | |- | ||
| | | 426 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rn4 rn4] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,037: | Line 5,006: | ||
| style='text-align:right'| 141 | | style='text-align:right'| 141 | ||
| style='text-align:right'| 142452 | | style='text-align:right'| 142452 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 424693 | | style='text-align:right'| 424693 | ||
| 72, 1, [http://genome-test. | | 72, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rn4&position=chr4:1247786-1247930 chr4:1247786-1247930] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rn4 plot rn4] | ||
|- | |- | ||
| | | 427 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,051: | Line 5,019: | ||
| style='text-align:right'| 516 | | style='text-align:right'| 516 | ||
| style='text-align:right'| 32231 | | style='text-align:right'| 32231 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 28921 | | style='text-align:right'| 28921 | ||
| 712, 1, [http://genome-test. | | 712, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rn5&position=chr3:45275318-45276742 chr3:45275318-45276742] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rn5 plot rn5] | ||
|- | |- | ||
| | | 428 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rn6 rn6] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001895.5/ GCF_000001895.5] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001895.5/ GCF_000001895.5] | ||
| Atlas Assembly suite v. 2.0; CLCbio v. 1.0; Velvet v. 1.0; PBjelly v. 2.0 | | Atlas Assembly suite v. 2.0; CLCbio v. 1.0; Velvet v. 1.0; PBjelly v. 2.0 | ||
Line 5,065: | Line 5,032: | ||
| style='text-align:right'| 290 | | style='text-align:right'| 290 | ||
| style='text-align:right'| 280406 | | style='text-align:right'| 280406 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 1258566 | | style='text-align:right'| 1258566 | ||
| 712, 1, [http://genome-test. | | 712, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rn6&position=chr3:40184108-40185532 chr3:40184108-40185532] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=rn6 plot rn6] | ||
|- | |- | ||
| | | 433 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000235385.1/ GCA_000235385.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000235385.1/ GCA_000235385.1] | ||
| AllPaths v. R37830 | | AllPaths v. R37830 | ||
Line 5,079: | Line 5,045: | ||
| style='text-align:right'| 77 | | style='text-align:right'| 77 | ||
| style='text-align:right'| 139356 | | style='text-align:right'| 139356 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 303093 | | style='text-align:right'| 303093 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=saiBol1&position=JH378136:528784-530883 JH378136:528784-530883] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=saiBol1 plot saiBol1] | ||
|- | |- | ||
| | | 435 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000189315.1/ GCF_000189315.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000189315.1/ GCF_000189315.1] | ||
| Phusion2 v. 1.0 | | Phusion2 v. 1.0 | ||
Line 5,093: | Line 5,058: | ||
| style='text-align:right'| 220 | | style='text-align:right'| 220 | ||
| style='text-align:right'| 2993318 | | style='text-align:right'| 2993318 | ||
| style='text-align:right'| 158 | | style='text-align:right'| 158 | ||
| style='text-align:right'| 6574378 | | style='text-align:right'| 6574378 | ||
| 958, 10, [http://genome-test. | | 958, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sarHar1&position=chr1_GL834475_random:882665-884590 chr1_GL834475_random:882665-884590] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=sarHar1 plot sarHar1] | ||
|- | |- | ||
| | | 436 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sebNig1 sebNig1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000475235.1/ GCA_000475235.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000475235.1/ GCA_000475235.1] | ||
| tbd | | tbd | ||
Line 5,107: | Line 5,071: | ||
| style='text-align:right'| 55.5 | | style='text-align:right'| 55.5 | ||
| style='text-align:right'| 11782 | | style='text-align:right'| 11782 | ||
| style='text-align:right'| 54.5 | | style='text-align:right'| 54.5 | ||
| style='text-align:right'| 11235 | | style='text-align:right'| 11235 | ||
| 82, 2, [http://genome-test. | | 82, 2, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sebNig1&position=KI499294:4621-4786 KI499294:4621-4786] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=sebNig1 plot sebNig1] | ||
|- | |- | ||
| | | 437 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sebRub1 sebRub1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000475215.1/ GCA_000475215.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000475215.1/ GCA_000475215.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 5,121: | Line 5,084: | ||
| style='text-align:right'| 55 | | style='text-align:right'| 55 | ||
| style='text-align:right'| 9711 | | style='text-align:right'| 9711 | ||
| style='text-align:right'| 51 | | style='text-align:right'| 51 | ||
| style='text-align:right'| 8253 | | style='text-align:right'| 8253 | ||
| 142, 1, [http://genome-test. | | 142, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sebRub1&position=KI444651:3586-3870 KI444651:3586-3870] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=sebRub1 plot sebRub1] | ||
|- | |- | ||
| | | 438 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=serCan1 serCan1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000534875.1/ GCF_000534875.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000534875.1/ GCF_000534875.1] | ||
| tbd | | tbd | ||
Line 5,135: | Line 5,097: | ||
| style='text-align:right'| 97 | | style='text-align:right'| 97 | ||
| style='text-align:right'| 36640 | | style='text-align:right'| 36640 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 33876 | | style='text-align:right'| 33876 | ||
| 971, 1, [http://genome-test. | | 971, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=serCan1&position=HG009242:4536330-4538272 HG009242:4536330-4538272] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=serCan1 plot serCan1] | ||
|- | |- | ||
| | | 439 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,149: | Line 5,110: | ||
| style='text-align:right'| 330 | | style='text-align:right'| 330 | ||
| style='text-align:right'| 79670 | | style='text-align:right'| 79670 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 75086 | | style='text-align:right'| 75086 | ||
| 895, 100, [http://genome-test. | | 895, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sorAra1&position=scaffold_247593:25660-27549 scaffold_247593:25660-27549] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=sorAra1 plot sorAra1] | ||
|- | |- | ||
| | | 440 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181275.1/ GCF_000181275.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181275.1/ GCF_000181275.1] | ||
| Allpaths v. R41070 | | Allpaths v. R41070 | ||
Line 5,163: | Line 5,123: | ||
| style='text-align:right'| 75 | | style='text-align:right'| 75 | ||
| style='text-align:right'| 359891 | | style='text-align:right'| 359891 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 822102 | | style='text-align:right'| 822102 | ||
| 992, 100, [http://genome-test. | | 992, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sorAra2&position=JH798160:15867029-15869112 JH798160:15867029-15869112] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=sorAra2 plot sorAra2] | ||
|- | |- | ||
| | | 441 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=speTri1 speTri1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,177: | Line 5,136: | ||
| style='text-align:right'| 46 | | style='text-align:right'| 46 | ||
| style='text-align:right'| 12167 | | style='text-align:right'| 12167 | ||
| style='text-align:right'| 879 | | style='text-align:right'| 879 | ||
| style='text-align:right'| 197520 | | style='text-align:right'| 197520 | ||
| 835, 100, [http://genome-test. | | 835, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=speTri1&position=scaffold_1259:158788-160557 scaffold_1259:158788-160557] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=speTri1 plot speTri1] | ||
|- | |- | ||
| | | 442 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000236235.1/ GCF_000236235.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000236235.1/ GCF_000236235.1] | ||
| ALLPATHS v. R37591 | | ALLPATHS v. R37591 | ||
Line 5,191: | Line 5,149: | ||
| style='text-align:right'| 95 | | style='text-align:right'| 95 | ||
| style='text-align:right'| 353556 | | style='text-align:right'| 353556 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 565083 | | style='text-align:right'| 565083 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=speTri2&position=JH393486:3045059-3047158 JH393486:3045059-3047158] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=speTri2 plot speTri2] | ||
|- | |- | ||
| | | 444 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=stePar1 stePar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690725.1/ GCF_000690725.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690725.1/ GCF_000690725.1] | ||
| ALLPATHS-LG v. August 2013 | | ALLPATHS-LG v. August 2013 | ||
Line 5,205: | Line 5,162: | ||
| style='text-align:right'| 65 | | style='text-align:right'| 65 | ||
| style='text-align:right'| 47063 | | style='text-align:right'| 47063 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 120402 | | style='text-align:right'| 120402 | ||
| 952, 1, [http://genome-test. | | 952, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=stePar1&position=KK580894:321554-323458 KK580894:321554-323458] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=stePar1 plot stePar1] | ||
|- | |- | ||
| | | 445 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| strCam0 | | style='text-align:center;'| strCam0 | ||
Line 5,219: | Line 5,175: | ||
| style='text-align:right'| 243 | | style='text-align:right'| 243 | ||
| style='text-align:right'| 7267 | | style='text-align:right'| 7267 | ||
| style='text-align:right'| 836.5 | | style='text-align:right'| 836.5 | ||
| style='text-align:right'| 40260 | | style='text-align:right'| 40260 | ||
| 184, 13, [http://genome-test. | | 184, 13, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strCam0&position=superscaffold45:7169362-7169742 superscaffold45:7169362-7169742] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=strCam0 plot strCam0] | ||
|- | |- | ||
| | | 446 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strCam1 strCam1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000698965.1/ GCF_000698965.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000698965.1/ GCF_000698965.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 5,233: | Line 5,188: | ||
| style='text-align:right'| 246 | | style='text-align:right'| 246 | ||
| style='text-align:right'| 7125 | | style='text-align:right'| 7125 | ||
| style='text-align:right'| 759 | | style='text-align:right'| 759 | ||
| style='text-align:right'| 39346 | | style='text-align:right'| 39346 | ||
| 184, 13, [http://genome-test. | | 184, 13, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strCam1&position=KL206666:4120006-4120386 KL206666:4120006-4120386] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=strCam1 plot strCam1] | ||
|- | |- | ||
| | | 447 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strPur1 strPur1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,247: | Line 5,201: | ||
| style='text-align:right'| 153 | | style='text-align:right'| 153 | ||
| style='text-align:right'| 303896 | | style='text-align:right'| 303896 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 238579 | | style='text-align:right'| 238579 | ||
| 89, 1, [http://genome-test. | | 89, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strPur1&position=Scaffold16400:576-754 Scaffold16400:576-754] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=strPur1 plot strPur1] | ||
|- | |- | ||
| | | 448 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strPur2 strPur2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,261: | Line 5,214: | ||
| style='text-align:right'| 55 | | style='text-align:right'| 55 | ||
| style='text-align:right'| 25281 | | style='text-align:right'| 25281 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 79238 | | style='text-align:right'| 79238 | ||
| 35, 1, [http://genome-test. | | 35, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strPur2&position=Scaffold12735:108654-108724 Scaffold12735:108654-108724] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=strPur2 plot strPur2] | ||
|- | |- | ||
| | | 449 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strPur3 strPur3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,275: | Line 5,227: | ||
| style='text-align:right'| 56 | | style='text-align:right'| 56 | ||
| style='text-align:right'| 64991 | | style='text-align:right'| 64991 | ||
| style='text-align:right'| 96 | | style='text-align:right'| 96 | ||
| style='text-align:right'| 187408 | | style='text-align:right'| 187408 | ||
| 35, 1, [http://genome-test. | | 35, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strPur3&position=Scaffold740:110486-110556 Scaffold740:110486-110556] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=strPur3 plot strPur3] | ||
|- | |- | ||
| | | 450 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002235.3/ GCF_000002235.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002235.3/ GCF_000002235.3] | ||
| Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement | | Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement | ||
Line 5,289: | Line 5,240: | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 326953 | | style='text-align:right'| 326953 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 206009 | | style='text-align:right'| 206009 | ||
| 425, 3, [http://genome-test. | | 425, 3, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strPur4&position=Scaffold112:361603-362455 Scaffold112:361603-362455] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=strPur4 plot strPur4] | ||
|- | |- | ||
| | | 452 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001040885.1/ GCA_001040885.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001040885.1/ GCA_001040885.1] | ||
| tbd | | tbd | ||
Line 5,303: | Line 5,253: | ||
| style='text-align:right'| 54.5 | | style='text-align:right'| 54.5 | ||
| style='text-align:right'| 109 | | style='text-align:right'| 109 | ||
| style='text-align:right'| 6 | | style='text-align:right'| 6 | ||
| style='text-align:right'| 12 | | style='text-align:right'| 12 | ||
| 67, 1, [http://genome-test. | | 67, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strRat2&position=chrUn_LN609483v1:243-377 chrUn_LN609483v1:243-377] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=strRat2 plot strRat2] | ||
|- | |- | ||
| | | 454 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=susScr1 susScr1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,317: | Line 5,266: | ||
| style='text-align:right'| 43 | | style='text-align:right'| 43 | ||
| style='text-align:right'| 34151 | | style='text-align:right'| 34151 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 66500 | | style='text-align:right'| 66500 | ||
| 986, 100, [http://genome-test. | | 986, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=susScr1&position=chr2:139016697-139018768 chr2:139016697-139018768] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=susScr1 plot susScr1] | ||
|- | |||
| 455 | |||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=susScr11 susScr11] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000003025.6/ GCF_000003025.6] | |||
| Falcon v. OCT-2015 | |||
| style='text-align:right'| 2 | |||
| style='text-align:right'| 104.5 | |||
| style='text-align:right'| 209 | |||
| style='text-align:right'| 100 | |||
| style='text-align:right'| 200 | |||
| 110, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=susScr11&position=chrY:6779476-6779795 chrY:6779476-6779795] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=susScr11 plot susScr11] | |||
|- | |- | ||
| | | 456 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=susScr2 susScr2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,331: | Line 5,292: | ||
| style='text-align:right'| 43 | | style='text-align:right'| 43 | ||
| style='text-align:right'| 34151 | | style='text-align:right'| 34151 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 66500 | | style='text-align:right'| 66500 | ||
| 986, 100, [http://genome-test. | | 986, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=susScr2&position=chr2:139016697-139018768 chr2:139016697-139018768] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=susScr2 plot susScr2] | ||
|- | |- | ||
| | | 457 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| taeGut0 | | style='text-align:center;'| taeGut0 | ||
Line 5,345: | Line 5,305: | ||
| style='text-align:right'| 45 | | style='text-align:right'| 45 | ||
| style='text-align:right'| 20495 | | style='text-align:right'| 20495 | ||
| style='text-align:right'| 442 | | style='text-align:right'| 442 | ||
| style='text-align:right'| 116920 | | style='text-align:right'| 116920 | ||
| 624, 10, [http://genome-test. | | 624, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=taeGut0&position=Contig233:50949-52206 Contig233:50949-52206] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=taeGut0 plot taeGut0] | ||
|- | |- | ||
| | | 458 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,359: | Line 5,318: | ||
| style='text-align:right'| 45 | | style='text-align:right'| 45 | ||
| style='text-align:right'| 22373 | | style='text-align:right'| 22373 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 22300 | | style='text-align:right'| 22300 | ||
| 689, 100, [http://genome-test. | | 689, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=taeGut1&position=chr21_random:54357-55834 chr21_random:54357-55834] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=taeGut1 plot taeGut1] | ||
|- | |- | ||
| | | 459 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151805.1/ GCF_000151805.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151805.1/ GCF_000151805.1] | ||
| PCAP v. 2008 | | PCAP v. 2008 | ||
Line 5,373: | Line 5,331: | ||
| style='text-align:right'| 44 | | style='text-align:right'| 44 | ||
| style='text-align:right'| 21273 | | style='text-align:right'| 21273 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 21900 | | style='text-align:right'| 21900 | ||
| 624, 100, [http://genome-test. | | 624, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=taeGut2&position=chr27:56676-58023 chr27:56676-58023] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=taeGut2 plot taeGut2] | ||
|- | |- | ||
| | | 461 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ GCA_000400755.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ GCA_000400755.1] | ||
| HAPs v. 0.2.2 | | HAPs v. 0.2.2 | ||
Line 5,387: | Line 5,344: | ||
| style='text-align:right'| 241 | | style='text-align:right'| 241 | ||
| style='text-align:right'| 91817 | | style='text-align:right'| 91817 | ||
| style='text-align:right'| 788 | | style='text-align:right'| 788 | ||
| style='text-align:right'| 407496 | | style='text-align:right'| 407496 | ||
| 503, 1, [http://genome-test. | | 503, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=takFla1&position=KE121297:329-1335 KE121297:329-1335] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=takFla1 plot takFla1] | ||
|- | |- | ||
| | | 462 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tarIhg38 tarIhg38] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,401: | Line 5,357: | ||
| style='text-align:right'| 78 | | style='text-align:right'| 78 | ||
| style='text-align:right'| 974 | | style='text-align:right'| 974 | ||
| style='text-align:right'| 440 | | style='text-align:right'| 440 | ||
| style='text-align:right'| 56689 | | style='text-align:right'| 56689 | ||
| 125, 20, [http://genome-test. | | 125, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tarIhg38&position=chrUn_KI270442v1:175618-175887 chrUn_KI270442v1:175618-175887] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tarIhg38 plot tarIhg38] | ||
|- | |- | ||
| | | 463 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,415: | Line 5,370: | ||
| style='text-align:right'| 70 | | style='text-align:right'| 70 | ||
| style='text-align:right'| 45530 | | style='text-align:right'| 45530 | ||
| style='text-align:right'| 191 | | style='text-align:right'| 191 | ||
| style='text-align:right'| 102767 | | style='text-align:right'| 102767 | ||
| 892, 100, [http://genome-test. | | 892, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1&position=scaffold_111889:3660-5543 scaffold_111889:3660-5543] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tarSyr1 plot tarSyr1] | ||
|- | |- | ||
| | | 464 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000164805.1/ GCF_000164805.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000164805.1/ GCF_000164805.1] | ||
| Celera v. DEC-2012 | | Celera v. DEC-2012 | ||
Line 5,429: | Line 5,383: | ||
| style='text-align:right'| 56 | | style='text-align:right'| 56 | ||
| style='text-align:right'| 17645 | | style='text-align:right'| 17645 | ||
| style='text-align:right'| 20 | | style='text-align:right'| 20 | ||
| style='text-align:right'| 9572 | | style='text-align:right'| 9572 | ||
| 1000, 20, [http://genome-test. | | 1000, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2&position=KE939253v1:939796-941815 KE939253v1:939796-941815] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tarSyr2 plot tarSyr2] | ||
|- | |- | ||
| | | 465 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tauEry1 tauEry1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000709365.1/ GCF_000709365.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000709365.1/ GCF_000709365.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 5,443: | Line 5,396: | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 394 | | style='text-align:right'| 394 | ||
| style='text-align:right'| 394 | | style='text-align:right'| 394 | ||
| 50, 394, [http://genome-test. | | 50, 394, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tauEry1&position=KL466072:20829-21322 KL466072:20829-21322] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tauEry1 plot tauEry1] | ||
|- | |- | ||
| | | 466 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tetNig1 tetNig1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,457: | Line 5,409: | ||
| style='text-align:right'| 272.5 | | style='text-align:right'| 272.5 | ||
| style='text-align:right'| 21868 | | style='text-align:right'| 21868 | ||
| style='text-align:right'| 1000 | | style='text-align:right'| 1000 | ||
| style='text-align:right'| 53904 | | style='text-align:right'| 53904 | ||
| 336, 59, [http://genome-test. | | 336, 59, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tetNig1&position=chr5:807217-807947 chr5:807217-807947] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tetNig1 plot tetNig1] | ||
|- | |- | ||
| | | 467 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,471: | Line 5,422: | ||
| style='text-align:right'| 298 | | style='text-align:right'| 298 | ||
| style='text-align:right'| 25569 | | style='text-align:right'| 25569 | ||
| style='text-align:right'| 500 | | style='text-align:right'| 500 | ||
| style='text-align:right'| 32404 | | style='text-align:right'| 32404 | ||
| 336, 59, [http://genome-test. | | 336, 59, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tetNig2&position=chr5:799217-799947 chr5:799217-799947] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tetNig2 plot tetNig2] | ||
|- | |- | ||
| | | 468 | ||
| 2015 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=thaSir1 thaSir1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001077635.1/ GCF_001077635.1] | |||
| ALLPATHS-LG v. May 2015 | |||
| style='text-align:right'| 3234 | |||
| style='text-align:right'| 95 | |||
| style='text-align:right'| 407625 | |||
| style='text-align:right'| 666 | |||
| style='text-align:right'| 2420576 | |||
| 981, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=thaSir1&position=NW_013657934v1:351094-353056 NW_013657934v1:351094-353056] | |||
| [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=thaSir1 plot thaSir1] | |||
|- | |||
| 469 | |||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tinGut1 tinGut1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 5,485: | Line 5,448: | ||
| style='text-align:right'| 96 | | style='text-align:right'| 96 | ||
| style='text-align:right'| 3855 | | style='text-align:right'| 3855 | ||
| style='text-align:right'| 1086 | | style='text-align:right'| 1086 | ||
| style='text-align:right'| 21982 | | style='text-align:right'| 21982 | ||
| 519, 68, [http://genome-test. | | 519, 68, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tinGut1&position=KL400865:236113-237218 KL400865:236113-237218] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tinGut1 plot tinGut1] | ||
|- | |- | ||
| | | 470 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tinGut2 tinGut2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 5,499: | Line 5,461: | ||
| style='text-align:right'| 96 | | style='text-align:right'| 96 | ||
| style='text-align:right'| 3855 | | style='text-align:right'| 3855 | ||
| style='text-align:right'| 1086 | | style='text-align:right'| 1086 | ||
| style='text-align:right'| 21982 | | style='text-align:right'| 21982 | ||
| 519, 68, [http://genome-test. | | 519, 68, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tinGut2&position=KL895544:236113-237218 KL895544:236113-237218] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tinGut2 plot tinGut2] | ||
|- | |- | ||
| | | 471 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triCas1 triCas1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,513: | Line 5,474: | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 8201 | | style='text-align:right'| 8201 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 6900 | | style='text-align:right'| 6900 | ||
| 214, 50, [http://genome-test. | | 214, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triCas1&position=Contig5855_Contig1469:226794-227271 Contig5855_Contig1469:226794-227271] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=triCas1 plot triCas1] | ||
|- | |- | ||
| | | 472 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triCas2 triCas2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,527: | Line 5,487: | ||
| style='text-align:right'| 62 | | style='text-align:right'| 62 | ||
| style='text-align:right'| 5442 | | style='text-align:right'| 5442 | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 313244 | | style='text-align:right'| 313244 | ||
| 412, 50, [http://genome-test. | | 412, 50, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triCas2&position=chrUn_46:283716-284589 chrUn_46:283716-284589] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=triCas2 plot triCas2] | ||
|- | |- | ||
| | | 473 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000243295.1/ GCF_000243295.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000243295.1/ GCF_000243295.1] | ||
| AllPaths v. R38542 | | AllPaths v. R38542 | ||
Line 5,541: | Line 5,500: | ||
| style='text-align:right'| 75 | | style='text-align:right'| 75 | ||
| style='text-align:right'| 527972 | | style='text-align:right'| 527972 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 726640 | | style='text-align:right'| 726640 | ||
| 1000, 100, [http://genome-test. | | 1000, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triMan1&position=JH594622:8537918-8540017 JH594622:8537918-8540017] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=triMan1 plot triMan1] | ||
|- | |- | ||
| | | 474 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181795.1/ GCF_000181795.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181795.1/ GCF_000181795.1] | ||
| PCAP v. January 12, 2007 | | PCAP v. January 12, 2007 | ||
Line 5,555: | Line 5,513: | ||
| style='text-align:right'| 55 | | style='text-align:right'| 55 | ||
| style='text-align:right'| 806 | | style='text-align:right'| 806 | ||
| style='text-align:right'| 10 | | style='text-align:right'| 10 | ||
| style='text-align:right'| 230 | | style='text-align:right'| 230 | ||
| 705, 10, [http://genome-test. | | 705, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triSpi1&position=GL622790v1:172202-173621 GL622790v1:172202-173621] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=triSpi1 plot triSpi1] | ||
|- | |- | ||
| | | 475 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triSui1 triSui1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000701005.1/ GCA_000701005.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000701005.1/ GCA_000701005.1] | ||
| SOAPdenovo v. 2 | | SOAPdenovo v. 2 | ||
Line 5,569: | Line 5,526: | ||
| style='text-align:right'| 138 | | style='text-align:right'| 138 | ||
| style='text-align:right'| 7959 | | style='text-align:right'| 7959 | ||
| style='text-align:right'| 1449 | | style='text-align:right'| 1449 | ||
| style='text-align:right'| 82883 | | style='text-align:right'| 82883 | ||
| 120, 68, [http://genome-test. | | 120, 68, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=triSui1&position=KL363219v1:83933-84240 KL363219v1:83933-84240] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=triSui1 plot triSui1] | ||
|- | |- | ||
| | | 477 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000334495.1/ GCF_000334495.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000334495.1/ GCF_000334495.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 5,583: | Line 5,539: | ||
| style='text-align:right'| 220.5 | | style='text-align:right'| 220.5 | ||
| style='text-align:right'| 290632 | | style='text-align:right'| 290632 | ||
| style='text-align:right'| 987.5 | | style='text-align:right'| 987.5 | ||
| style='text-align:right'| 1823897 | | style='text-align:right'| 1823897 | ||
| 861, 16, [http://genome-test. | | 861, 16, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tupChi1&position=KB320907:3306581-3308318 KB320907:3306581-3308318] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tupChi1 plot tupChi1] | ||
|- | |- | ||
| | | 478 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,597: | Line 5,552: | ||
| style='text-align:right'| 41.5 | | style='text-align:right'| 41.5 | ||
| style='text-align:right'| 15556 | | style='text-align:right'| 15556 | ||
| style='text-align:right'| 388 | | style='text-align:right'| 388 | ||
| style='text-align:right'| 52461 | | style='text-align:right'| 52461 | ||
| 993, 100, [http://genome-test. | | 993, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=turTru1&position=scaffold_108458:6669-8754 scaffold_108458:6669-8754] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=turTru1 plot turTru1] | ||
|- | |- | ||
| | | 479 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151865.2/ GCF_000151865.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151865.2/ GCF_000151865.2] | ||
| Atlas, Atlas-Link, Atlas-GapFill v. June 2011 | | Atlas, Atlas-Link, Atlas-GapFill v. June 2011 | ||
Line 5,611: | Line 5,565: | ||
| style='text-align:right'| 70 | | style='text-align:right'| 70 | ||
| style='text-align:right'| 466776 | | style='text-align:right'| 466776 | ||
| style='text-align:right'| 188.5 | | style='text-align:right'| 188.5 | ||
| style='text-align:right'| 1979352 | | style='text-align:right'| 1979352 | ||
| 44, 1, [http://genome-test. | | 44, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=turTru2&position=JH496197:2095-2183 JH496197:2095-2183] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=turTru2 plot turTru2] | ||
|- | |- | ||
| | | 480 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1 tytAlb1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687205.1/ GCF_000687205.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687205.1/ GCF_000687205.1] | ||
| SOAPdenovo v. 1.6 | | SOAPdenovo v. 1.6 | ||
Line 5,625: | Line 5,578: | ||
| style='text-align:right'| 170 | | style='text-align:right'| 170 | ||
| style='text-align:right'| 340 | | style='text-align:right'| 340 | ||
| style='text-align:right'| 326 | | style='text-align:right'| 326 | ||
| style='text-align:right'| 652 | | style='text-align:right'| 652 | ||
| 289, 220, [http://genome-test. | | 289, 220, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1&position=KK379918:2163-2960 KK379918:2163-2960] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=tytAlb1 plot tytAlb1] | ||
|- | |- | ||
| | | 481 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ursMar1 ursMar1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687225.1/ GCF_000687225.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687225.1/ GCF_000687225.1] | ||
| SOAPdenovo v. 1.05 | | SOAPdenovo v. 1.05 | ||
Line 5,639: | Line 5,591: | ||
| style='text-align:right'| 41 | | style='text-align:right'| 41 | ||
| style='text-align:right'| 12130 | | style='text-align:right'| 12130 | ||
| style='text-align:right'| 3384 | | style='text-align:right'| 3384 | ||
| style='text-align:right'| 708704 | | style='text-align:right'| 708704 | ||
| 711, 49, [http://genome-test. | | 711, 49, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ursMar1&position=KK498595:3401141-3402611 KK498595:3401141-3402611] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=ursMar1 plot ursMar1] | ||
|- | |- | ||
| | | 482 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=venter1 venter1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,653: | Line 5,604: | ||
| style='text-align:right'| 411.5 | | style='text-align:right'| 411.5 | ||
| style='text-align:right'| 26995 | | style='text-align:right'| 26995 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 64592 | | style='text-align:right'| 64592 | ||
| 862, 20, [http://genome-test. | | 862, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=venter1&position=chr2:102870978-102872721 chr2:102870978-102872721] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=venter1 plot venter1] | ||
|- | |- | ||
| | | 483 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,667: | Line 5,617: | ||
| style='text-align:right'| 251 | | style='text-align:right'| 251 | ||
| style='text-align:right'| 71912 | | style='text-align:right'| 71912 | ||
| style='text-align:right'| 276 | | style='text-align:right'| 276 | ||
| style='text-align:right'| 310711 | | style='text-align:right'| 310711 | ||
| 993, 100, [http://genome-test. | | 993, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=vicPac1&position=scaffold_812:411693-413778 scaffold_812:411693-413778] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=vicPac1 plot vicPac1] | ||
|- | |- | ||
| | | 484 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000164845.1/ GCF_000164845.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000164845.1/ GCF_000164845.1] | ||
| Newbler v. May-2012 | | Newbler v. May-2012 | ||
Line 5,681: | Line 5,630: | ||
| style='text-align:right'| 69 | | style='text-align:right'| 69 | ||
| style='text-align:right'| 115488 | | style='text-align:right'| 115488 | ||
| style='text-align:right'| 369 | | style='text-align:right'| 369 | ||
| style='text-align:right'| 430947 | | style='text-align:right'| 430947 | ||
| 685, 20, [http://genome-test. | | 685, 20, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=vicPac2&position=KB632527:971889-973278 KB632527:971889-973278] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=vicPac2 plot vicPac2] | ||
|- | |- | ||
| | | 485 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| vicVic1 | | style='text-align:center;'| vicVic1 | ||
Line 5,695: | Line 5,643: | ||
| style='text-align:right'| 252.5 | | style='text-align:right'| 252.5 | ||
| style='text-align:right'| 71401 | | style='text-align:right'| 71401 | ||
| style='text-align:right'| 263 | | style='text-align:right'| 263 | ||
| style='text-align:right'| 309237 | | style='text-align:right'| 309237 | ||
| 993, 100, [http://genome-test. | | 993, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=vicVic1&position=scaffold_812:411693-413778 scaffold_812:411693-413778] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=vicVic1 plot vicVic1] | ||
|- | |- | ||
| | | 486 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenLae2 xenLae2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001663975.1/ GCF_001663975.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001663975.1/ GCF_001663975.1] | ||
| Meraculous v. May-2013 | | Meraculous v. May-2013 | ||
Line 5,709: | Line 5,656: | ||
| style='text-align:right'| 43 | | style='text-align:right'| 43 | ||
| style='text-align:right'| 112843 | | style='text-align:right'| 112843 | ||
| style='text-align:right'| 265 | | style='text-align:right'| 265 | ||
| style='text-align:right'| 1906995 | | style='text-align:right'| 1906995 | ||
| 50, 10, [http://genome-test. | | 50, 10, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenLae2&position=chr6S:105116072-105116181 chr6S:105116072-105116181] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=xenLae2 plot xenLae2] | ||
|- | |- | ||
| | | 487 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro1 xenTro1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,723: | Line 5,669: | ||
| style='text-align:right'| 177.5 | | style='text-align:right'| 177.5 | ||
| style='text-align:right'| 37717 | | style='text-align:right'| 37717 | ||
| style='text-align:right'| 889.5 | | style='text-align:right'| 889.5 | ||
| style='text-align:right'| 437093 | | style='text-align:right'| 437093 | ||
| 94, 1, [http://genome-test. | | 94, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro1&position=scaffold_26179:153-341 scaffold_26179:153-341] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=xenTro1 plot xenTro1] | ||
|- | |- | ||
| | | 488 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro2 xenTro2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,737: | Line 5,682: | ||
| style='text-align:right'| 229.5 | | style='text-align:right'| 229.5 | ||
| style='text-align:right'| 33928 | | style='text-align:right'| 33928 | ||
| style='text-align:right'| 806.5 | | style='text-align:right'| 806.5 | ||
| style='text-align:right'| 320973 | | style='text-align:right'| 320973 | ||
| 83, 1, [http://genome-test. | | 83, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro2&position=scaffold_13788:6263-6429 scaffold_13788:6263-6429] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=xenTro2 plot xenTro2] | ||
|- | |- | ||
| | | 489 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| tbd | | tbd | ||
Line 5,751: | Line 5,695: | ||
| style='text-align:right'| 229.5 | | style='text-align:right'| 229.5 | ||
| style='text-align:right'| 33928 | | style='text-align:right'| 33928 | ||
| style='text-align:right'| 806.5 | | style='text-align:right'| 806.5 | ||
| style='text-align:right'| 320973 | | style='text-align:right'| 320973 | ||
| 83, 1, [http://genome-test. | | 83, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro3&position=GL185958:6263-6429 GL185958:6263-6429] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=xenTro3 plot xenTro3] | ||
|- | |- | ||
| | | 490 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004195.2/ GCF_000004195.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004195.2/ GCF_000004195.2] | ||
| ARACHNE v. 20071016_modified | | ARACHNE v. 20071016_modified | ||
Line 5,765: | Line 5,708: | ||
| style='text-align:right'| 82.5 | | style='text-align:right'| 82.5 | ||
| style='text-align:right'| 16149 | | style='text-align:right'| 16149 | ||
| style='text-align:right'| 201 | | style='text-align:right'| 201 | ||
| style='text-align:right'| 69741 | | style='text-align:right'| 69741 | ||
| 775, 100, [http://genome-test. | | 775, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro7&position=KB022861:7377-9026 KB022861:7377-9026] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=xenTro7 plot xenTro7] | ||
|- | |- | ||
| | | 491 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro9 xenTro9] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004195.3/ GCF_000004195.3] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004195.3/ GCF_000004195.3] | ||
| Meraculous v. May-2013 | | Meraculous v. May-2013 | ||
Line 5,779: | Line 5,721: | ||
| style='text-align:right'| 105.5 | | style='text-align:right'| 105.5 | ||
| style='text-align:right'| 27368 | | style='text-align:right'| 27368 | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 99243 | | style='text-align:right'| 99243 | ||
| 775, 100, [http://genome-test. | | 775, 100, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xenTro9&position=chrUn_NW_016684502v1:7377-9026 chrUn_NW_016684502v1:7377-9026] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=xenTro9 plot xenTro9] | ||
|- | |- | ||
| | | 492 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xipMac1 xipMac1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000241075.1/ GCF_000241075.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000241075.1/ GCF_000241075.1] | ||
| PCAP v. 3/30/09; Newbler v. MapAsmResearch-02/17/2010 | | PCAP v. 3/30/09; Newbler v. MapAsmResearch-02/17/2010 | ||
Line 5,793: | Line 5,734: | ||
| style='text-align:right'| 50 | | style='text-align:right'| 50 | ||
| style='text-align:right'| 32896 | | style='text-align:right'| 32896 | ||
| style='text-align:right'| 131 | | style='text-align:right'| 131 | ||
| style='text-align:right'| 334271 | | style='text-align:right'| 334271 | ||
| 30, 1, [http://genome-test. | | 30, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=xipMac1&position=JH556915:15756-15816 JH556915:15756-15816] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=xipMac1 plot xipMac1] | ||
|- | |- | ||
| | | 494 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1 zonAlb1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000385455.1/ GCF_000385455.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000385455.1/ GCF_000385455.1] | ||
| Allpaths-LG v. Feb-2013 | | Allpaths-LG v. Feb-2013 | ||
Line 5,807: | Line 5,747: | ||
| style='text-align:right'| 79 | | style='text-align:right'| 79 | ||
| style='text-align:right'| 50834 | | style='text-align:right'| 50834 | ||
| style='text-align:right'| 1 | | style='text-align:right'| 1 | ||
| style='text-align:right'| 134738 | | style='text-align:right'| 134738 | ||
| 990, 1, [http://genome-test. | | 990, 1, [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1&position=KB913055:7474487-7476467 KB913055:7474487-7476467] | ||
| [http://hgwdev-hiram. | | [http://hgwdev-hiram.gi.ucsc.edu/cgi-bin/gapOverlap?db=zonAlb1 plot zonAlb1] | ||
|} | |} | ||
== assemblies with zero duplicate gap sequences == | == assemblies with zero duplicate gap sequences == | ||
{| border='1' style='border-collapse:collapse' class='wikitable sortable' | {| border='1' style='border-collapse:collapse' class='wikitable sortable' | ||
Line 5,828: | Line 5,764: | ||
| 001 | | 001 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=aciBauTYTH_1 aciBauTYTH_1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000302575.1/ GCF_000302575.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000302575.1/ GCF_000302575.1] | ||
| style='text-align:right;'| 4 | | style='text-align:right;'| 4 | ||
Line 5,835: | Line 5,771: | ||
| 002 | | 002 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=afrOth13 afrOth13] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 220 | | style='text-align:right;'| 220 | ||
Line 5,842: | Line 5,778: | ||
| 003 | | 003 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=apaVit1 apaVit1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000703405.1/ GCF_000703405.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000703405.1/ GCF_000703405.1] | ||
| style='text-align:right;'| 50921 | | style='text-align:right;'| 50921 | ||
Line 5,848: | Line 5,784: | ||
|- | |- | ||
| 004 | | 004 | ||
| 2018 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=astCal1 astCal1] | |||
| style='text-align:center;'| tbd | |||
| style='text-align:right;'| 395 | |||
| style='text-align:center;'| tbd | |||
|- | |||
| 005 | |||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=borEut13 borEut13] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 006 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=bunEbo1 bunEbo1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000889155.1/ GCF_000889155.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000889155.1/ GCF_000889155.1] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 007 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=caeJap3 caeJap3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 008 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=canFamPoodle1 canFamPoodle1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000181415.1/ GCA_000181415.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000181415.1/ GCA_000181415.1] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 009 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=canHg12 canHg12] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 010 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce10 ce10] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 011 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002985.6/ GCF_000002985.6] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002985.6/ GCF_000002985.6] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 012 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce2 ce2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 5 | | style='text-align:right;'| 5 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 013 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce3 ce3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 014 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce4 ce4] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 015 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce5 ce5] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 016 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce6 ce6] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 017 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce7 ce7] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 018 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce8 ce8] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 019 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ce9 ce9] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 020 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=droMoj1 droMoj1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 021 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eboVir1 eboVir1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 2 | | style='text-align:right;'| 2 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 022 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eboVir3 eboVir3] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 023 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=euaGli13 euaGli13] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 19510 | | style='text-align:right;'| 19510 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 024 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=eutHer13 eutHer13] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 304 | | style='text-align:right;'| 304 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 025 | ||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=felCat9 felCat9] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181335.3/ GCF_000181335.3] | |||
| style='text-align:right;'| 418 | |||
| style='text-align:center;'| WTDBG v. 1.2, Chromonomer v. 1.0.7 | |||
|- | |||
| 026 | |||
| 2018 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=galGal6 galGal6] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.5/ GCF_000002315.5] | |||
| style='text-align:right;'| 943 | |||
| style='text-align:center;'| FALCON-integrate v. 1.7.5 | |||
|- | |||
| 027 | |||
| 1880 | | 1880 | ||
| style='text-align:center;'| gasAsc0 | | style='text-align:center;'| gasAsc0 | ||
Line 5,994: | Line 5,951: | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 028 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gliRes13 gliRes13] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 39623 | | style='text-align:right;'| 39623 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 029 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=gorGor5 gorGor5] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 030 | ||
| 1993 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hbv1 hbv1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000861825.2/ GCF_000861825.2] | |||
| style='text-align:right;'| 0 | |||
| style='text-align:center;'| tbd | |||
|- | |||
| 031 | |||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=homIni14 homIni14] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 032 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| homNea0 | | style='text-align:center;'| homNea0 | ||
Line 6,022: | Line 5,986: | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 033 | ||
| 2002 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=hpv1 hpv1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000862685.1/ GCF_000862685.1] | |||
| style='text-align:right;'| 0 | |||
| style='text-align:center;'| tbd | |||
|- | |||
| 034 | |||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=lauRas13 lauRas13] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 31794 | | style='text-align:right;'| 31794 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 035 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=marVir1 marVir1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 036 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000172435.1/ GCA_000172435.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000172435.1/ GCA_000172435.1] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 037 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=melInc1 melInc1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180415.1/ GCA_000180415.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180415.1/ GCA_000180415.1] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 038 | ||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=oreNil3 oreNil3] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001858045.1/ GCF_001858045.1] | |||
| style='text-align:right;'| 424 | |||
| style='text-align:center;'| Canu v. 1.0; Chromonomer v. 1.05 | |||
|- | |||
| 039 | |||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=otoGar1 otoGar1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 040 | ||
| 2018 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=ponAbe3 ponAbe3] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_002880775.1/ GCF_002880775.1] | |||
| style='text-align:right;'| 553 | |||
| style='text-align:center;'| Falcon v. (git hash: 91e700c4) Nov 2015; BioNano Access Hybrid Scaffolds | |||
|- | |||
| 041 | |||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=priPac2 priPac2] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180635.1/ GCA_000180635.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180635.1/ GCA_000180635.1] | ||
| style='text-align:right;'| 59 | | style='text-align:right;'| 59 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 042 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=repBase0 repBase0] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 2137 | | style='text-align:right;'| 2137 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 043 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=repBase1 repBase1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 3623 | | style='text-align:right;'| 3623 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 044 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| repBase2 | | style='text-align:center;'| repBase2 | ||
Line 6,085: | Line 6,070: | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 045 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=resEbo1 resEbo1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000854085.1/ GCF_000854085.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000854085.1/ GCF_000854085.1] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 046 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1 rouAeg1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001466805.2/ GCF_001466805.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001466805.2/ GCF_001466805.2] | ||
| style='text-align:right;'| 638 | | style='text-align:right;'| 638 | ||
| style='text-align:center;'| SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0 | | style='text-align:center;'| SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0 | ||
|- | |- | ||
| | | 047 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sacCer1 sacCer1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 048 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sacCer2 sacCer2] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 049 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000146045.2/ GCF_000146045.2] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000146045.2/ GCF_000146045.2] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 050 | ||
| 1880 | | 1880 | ||
| style='text-align:center;'| salMan0 | | style='text-align:center;'| salMan0 | ||
Line 6,127: | Line 6,112: | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 051 | ||
| 2006 | |||
| style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=staAur1 staAur1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000013425.1/ GCF_000013425.1] | |||
| style='text-align:right;'| 1 | |||
| style='text-align:center;'| tbd | |||
|- | |||
| 052 | |||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=strRat1 strRat1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 3207 | | style='text-align:right;'| 3207 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 053 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=sudEbo1 sudEbo1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000855585.1/ GCF_000855585.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000855585.1/ GCF_000855585.1] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 054 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=taiEbo1 taiEbo1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000888475.1/ GCF_000888475.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000888475.1/ GCF_000888475.1] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 055 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1] | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|- | |- | ||
| | | 056 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test. | | style='text-align:center;'| [http://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?db=zaiEbo1 zaiEbo1] | ||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000848505.1/ GCF_000848505.1] | | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000848505.1/ GCF_000848505.1] | ||
| style='text-align:right;'| 0 | | style='text-align:right;'| 0 | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|} | |} |
Latest revision as of 19:01, 8 March 2019
methods
The measurements are taken from the gapOverlap.bed[.gz] file in /hive/data/genomes/<db>/bed/gapOverlap/gapOverlap.bed[.gz] The score column in the bed file (column 5) is the size of the duplicated sequence. The gap size between the duplicated sequence is calculated from: end - start + 2 * score
The size of the duplicated sequence is between 30 bases and 1000 bases, we are not checking for sizes outside that range.
The item total is the sum of the sizes of the duplicated sequences. Not both sides though, just one side. This indicates how much sequence is duplicated. Multiply this by 2 to see total amount of sequence involved in these repeats for both sides.
The gap total is the sum of the sizes of all the gaps involved.
table features
The table columns can be sorted, click on the up/down arrow icon in the column header. The 'year' is what we have in the dbDb table as indicated from the assembly information files for the date of the assembly. A few do not have dates (set to 1880), and do not have database genome browsers.
The example item is a worst case example, where the ratio of duplicate sequence size to gap size is the highest, i.e. smallest gap with largest dup size These ends were found by taking 1,000 bases on each side of any run of N's in the sequence, thus any gap, and aligned with the blat command:
blat -q=dna -minIdentity=95 -repMatch=10 upstream.fa downstream.fa
Filtering the PSL output for a perfect match, no mis-matches, and therefore of equal size matching sequence, where the alignment ends exactly at the end of the upstream sequence before the gap and begins exactly at the start of the downstream sequence after the gap.
gapOverlap table statistics
count | year | dbName | ncbiAsmId | assembly method | item
count |
item
median |
item
total |
gap
median |
gap
total |
example item
dup size, gap size, link |
scatter plot
dup size vs. gap size |
---|---|---|---|---|---|---|---|---|---|---|---|
001 | 2016 | CBA_J | GCA_001624475.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 24180 | 279.5 | 7933814 | 26 | 26736971 | 999, 1, chr16:100093490-100095488 | plot GCA_001624475.1_CBA_J_v1 |
002 | 2016 | PAHARI_EIJ | GCA_900095145.1 | tbd | 6365 | 69 | 479534 | 1 | 675789 | 1000, 1, chr7:107557946-107559946 | plot GCA_900095145.1_PAHARI_EIJ_v1 |
003 | 2016 | PWK_PhJ | GCA_001624775.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 246352 | 65 | 16823451 | 25 | 10585326 | 1000, 11, chrX:47500642-47502652 | plot GCA_001624775.1_PWK_PhJ_v1 |
004 | 2016 | SPRET_EiJ | GCA_001624865.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail genomics v. August-2015; Ragout v. 2.0b | 17567 | 516 | 8157541 | 100 | 12022683 | 1000, 1, chr10:66049175-66051175 | plot GCA_001624865.1_SPRET_EiJ_v1 |
005 | 2016 | NZO_HlLtJ | GCA_001624745.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 21209 | 448 | 8647582 | 25 | 14665906 | 1000, 1, chr10:29328015-29330015 | plot GCA_001624745.1_NZO_HlLtJ_v1 |
006 | 2016 | 129S1_SvImJ | GCA_001624185.1 | SGA v. 0.9.19; Ragout v. 2.0b | 20479 | 400 | 7813478 | 25 | 15456883 | 1000, 1, chr15:34994444-34996444 | plot GCA_001624185.1_129S1_SvImJ_v1 |
007 | 2016 | C57BL_6NJ | GCA_001632555.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 24698 | 97 | 6239791 | 25 | 14404336 | 992, 1, chr10:109927459-109929443 | plot GCA_001632555.1_C57BL_6NJ_v1 |
008 | 2016 | AKR_J | GCA_001624295.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 18106 | 335 | 6717178 | 25 | 14468858 | 1000, 1, chr16:53464467-53466467 | plot GCA_001624295.1_AKR_J_v1 |
009 | 2016 | C3H_HeJ | GCA_001632575.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 19436 | 307 | 6287513 | 26 | 12931709 | 1000, 1, chr1:52782023-52784023 | plot GCA_001632575.1_C3H_HeJ_v1 |
010 | 2016 | FVB_NJ | GCA_001624535.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 14811 | 355 | 4902432 | 11 | 8504942 | 1000, 1, chr17:22790916-22792916 | plot GCA_001624535.1_FVB_NJ_v1 |
011 | 2016 | WSB_EiJ | GCA_001624835.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 11455 | 236 | 3524308 | 25 | 10785288 | 994, 1, chrX:58921651-58923639 | plot GCA_001624835.1_WSB_EiJ_v1 |
012 | 2016 | A_J | GCA_001624215.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 38843 | 80 | 6428892 | 25 | 14025482 | 1000, 1, chr17:63064911-63066911 | plot GCA_001624215.1_A_J_v1 |
013 | 2016 | CAROLI_EIJ | GCA_900094665.1 | tbd | 6469 | 70 | 484857 | 1 | 599072 | 945, 1, chr1:145228793-145230683 | plot GCA_900094665.1_CAROLI_EIJ_v1 |
014 | 2016 | LP_J | GCA_001632615.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 18175 | 98 | 5185817 | 25 | 13674278 | 997, 1, chr12:42758762-42760756 | plot GCA_001632615.1_LP_J_v1 |
015 | 2016 | BALB_cJ | GCA_001632525.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 15793 | 363 | 5543975 | 25 | 10053337 | 999, 1, chr4:59636957-59638955 | plot GCA_001632525.1_BALB_cJ_v1 |
016 | 2016 | DBA_2J | GCA_001624505.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 13245 | 98 | 3606947 | 25 | 7251641 | 999, 1, chr10:47277903-47279901 | plot GCA_001624505.1_DBA_2J_v1 |
017 | 2016 | NOD_ShiLtJ | GCA_001624675.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 36838 | 172 | 10515906 | 26 | 25076950 | 1000, 1, chr15:69777938-69779938 | plot GCA_001624675.1_NOD_ShiLtJ_v1 |
018 | 2016 | CAST_EiJ | GCA_001624445.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail Genomics v. August-2015; Ragout v. 2.0b | 14714 | 324 | 5063290 | 100 | 10013826 | 1000, 1, chr12:100100159-100102159 | plot GCA_001624445.1_CAST_EiJ_v1 |
019 | 2013 | CHM1 | GCF_000306695.2 | SRPRISM v. 2.4.28-alpha; ARGO v. 0.1 | 85 | 86 | 10897 | 88 | 65164 | 319, 10, chr6:108876987-108877634 | plot CHM1 |
020 | 2018 | GRCm38B | tbd | tbd | 3 | 304 | 860 | 6000 | 57759 | 477, 1759, chrX_GPS_017319198v1_random:240297-243009 | plot GRCm38B |
021 | 2014 | acaChl1 | GCF_000695815.1 | SOAPdenovo v. 1.6 | 5 | 170 | 1250 | 188 | 2340 | 722, 188, KK833582:5976-7607 | plot acaChl1 |
024 | 2009 | ailMel1 | GCF_000004335.2 | tbd | 48 | 104 | 10594 | 1193 | 82504 | 75, 1, GL192694.1:348745-348895 | plot ailMel1 |
025 | 2012 | allMis1 | GCF_000281125.1 | Allpaths v. R41313; manual scaffolding | 1151 | 83 | 273934 | 1 | 74939 | 999, 1, JH739280:136433-138431 | plot allMis1 |
026 | 2013 | allSin1 | GCF_000455745.1 | SOAPdenovo v. 1.05 | 95 | 125 | 26114 | 2265 | 261774 | 69, 10, KE696011:2095494-2095641 | plot allSin1 |
027 | 2013 | amaVit1 | GCA_000332375.1 | Ray software v. 3 | 10099 | 81 | 1392334 | 172 | 2756641 | 492, 13, KB238901:2710-3706 | plot amaVit1 |
028 | 2013 | anaPla1 | GCF_000355885.1 | SOAPdenovo Release v. 1.03 | 31 | 251 | 10663 | 1660 | 94318 | 99, 1, KB742632:907264-907462 | plot anaPla1 |
029 | 2014 | ancCey1 | GCA_000688135.1 | Velvet v. 1.2.05; BGI GapCloser v. 1.12 (release_2011); HaploMerger v. 20111230; ERANGE v. 3.2 | 805 | 154 | 171926 | 1 | 85569 | 981, 1, JARK01000206v1:43215-45177 | plot ancCey1 |
030 | 2014 | angJap1 | GCA_000470695.1 | CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta | 4539 | 91 | 477038 | 1 | 610535 | 588, 1, KI304555:142639-143815 | plot angJap1 |
031 | 2007 | anoCar1 | tbd | tbd | 20 | 383.5 | 8167 | 537.5 | 23338 | 965, 100, scaffold_84:3853690-3855719 | plot anoCar1 |
032 | 2010 | anoCar2 | GCF_000090745.1 | Arachne v. 3.0.0 | 25 | 240 | 6694 | 258 | 26105 | 318, 100, chr4:54548520-54549255 | plot anoCar2 |
033 | 2003 | anoGam1 | tbd | tbd | 7 | 528 | 3139 | 1000 | 21041 | 1000, 384, chr2L:5019927-5022310 | plot anoGam1 |
034 | 2006 | anoGam3 | GCF_000005575.2 | tbd | 6 | 415 | 2611 | 1884.5 | 20042 | 1000, 384, chr2L:5538027-5540410 | plot anoGam3 |
035 | 2017 | aotNan1 | GCF_000952055.2 | PBJelly2 v. 14.9.9; AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 | 2334 | 182.5 | 863402 | 100 | 2688526 | 990, 10, NW_018504266v1:1888714-1890703 | plot aotNan1 |
036 | 2013 | apaSpi1 | GCA_000385615.1 | SOAPdenovo v. 1.0.5 | 607 | 61 | 34340 | 100 | 56961 | 86, 10, KB929338:2579176-2579357 | plot apaSpi1 |
038 | 2004 | apiMel1 | tbd | tbd | 216 | 50 | 12150 | 10 | 24454 | 64, 1, Group14.17:517485-517613 | plot apiMel1 |
039 | 2005 | apiMel2 | tbd | tbd | 133 | 50 | 7371 | 50 | 19757 | 168, 50, Group4:4855105-4855490 | plot apiMel2 |
040 | 2005 | apiMel3 | tbd | tbd | 199 | 62 | 16045 | 50 | 27354 | 198, 50, Group15:1672512-1672957 | plot apiMel3 |
041 | 2010 | apiMel4 | GCF_000002195.4 | Atlas assembly system v. before 2011 | 226 | 52.5 | 13378 | 50 | 24561 | 167, 50, Group14:1674117-1674500 | plot apiMel4 |
042 | 2008 | aplCal1 | tbd | tbd | 25 | 77 | 3383 | 100 | 16863 | 390, 100, scaffold_1802:24095-24974 | plot aplCal1 |
043 | 2014 | aptFor1 | GCF_000699145.1 | SOAPdenovo v. 1.6 | 109 | 147 | 26798 | 1575 | 323838 | 779, 98, KL225582:135043-136698 | plot aptFor1 |
044 | 2015 | aptMan1 | GCF_001039765.1 | tbd | 15742 | 124 | 4653010 | 1 | 3331011 | 1000, 1, NW_013987125v1:2508272-2510272 | plot aptMan1 |
045 | 2014 | aquChr1 | GCA_000696035.1 | ABySS v. 1.3.6 | 4592 | 43 | 201248 | 65 | 16118238 | 65, 1, KK850461:8872-9002 | plot aquChr1 |
046 | 2014 | aquChr2 | GCA_000766835.1 | AllPaths-LG v. August 2013 | 326 | 82.5 | 31349 | 1 | 143600 | 1000, 1, KN265664v1:16826772-16828772 | plot aquChr2 |
047 | 2013 | araMac1 | GCA_000400695.1 | CLC Genomics Workbench v. 4.9 | 120 | 48.5 | 7929 | 33 | 27135 | 241, 2, KE047968:4314-4797 | plot araMac1 |
048 | 1880 | araTha1 | GCF_000001735.3 | tbd | 1 | 289 | 289 | 60 | 60 | 289, 60, chr3:13855281-13855918 | plot araTha1 |
049 | 2012 | ascSuu1 | GCA_000298755.1 | SOAPdenovo v. 1.04 | 9 | 404 | 3688 | 555 | 6481 | 1000, 247, JH879107v1:69728-71974 | plot ascSuu1 |
051 | 2013 | astMex1 | GCF_000372685.1 | AllPathsLG v. Jan-2013 | 1385 | 78 | 137888 | 100 | 1964877 | 647, 1, KB872443:19678-20972 | plot astMex1 |
052 | 2013 | balAcu1 | GCF_000493695.1 | SOAPdenovo v. 16-Mar-2012 | 211 | 149 | 57860 | 821 | 371511 | 926, 15, KI537556:2252563-2254429 | plot balAcu1 |
053 | 2014 | balPav1 | GCA_000709895.1 | SOAPdenovo v. 1.6 | 5 | 270 | 1303 | 216 | 1098 | 391, 46, KL482982:8685-9512 | plot balPav1 |
054 | 2014 | bisBis1 | GCA_000754665.1 | MaSuRCA v. 2.1.0 | 8184 | 72 | 712109 | 100 | 947641 | 933, 100, KN265089v1:519297-521262 | plot bisBis1 |
056 | 2011 | bosMut1 | GCA_000298355.1 | SOAPdenovo v. 1.14 | 139 | 83 | 27917 | 1274 | 256420 | 71, 14, JH880933:479978-480133 | plot bosMut1 |
057 | 2004 | bosTau1 | tbd | tbd | 6550 | 40 | 289123 | 50 | 609155 | 200, 50, SCAFFOLD51732:9156-9605 | plot bosTau1 |
058 | 2005 | bosTau2 | tbd | tbd | 4361 | 105 | 564259 | 50 | 2525381 | 997, 50, scaffold4383:34413-36456 | plot bosTau2 |
059 | 2006 | bosTau3 | tbd | tbd | 411 | 51 | 38673 | 50 | 270212 | 1000, 50, chr10:68862764-68864813 | plot bosTau3 |
060 | 2007 | bosTau4 | tbd | tbd | 437 | 53 | 52814 | 50 | 376407 | 1000, 50, chr10:75537624-75539673 | plot bosTau4 |
061 | 2009 | bosTau5 | tbd | tbd | 435 | 53 | 51742 | 50 | 376650 | 1000, 50, chr10:75464684-75466733 | plot bosTau5 |
062 | 2009 | bosTau6 | GCF_000003055.5 | UMD Overlapper v. 2009; additional processing | 789 | 670 | 463109 | 100 | 87080 | 923, 1, chr22:31476636-31478482 | plot bosTau6 |
063 | 2011 | bosTau7 | tbd | tbd | 413 | 55 | 39706 | 50 | 141131 | 1000, 50, chr10:75201034-75203083 | plot bosTau7 |
064 | 2014 | bosTau8 | GCF_000003055.5 | UMD Overlapper v. 2009; additional processing | 789 | 670 | 463109 | 100 | 87080 | 923, 1, chr22:31476636-31478482 | plot bosTau8 |
065 | 2018 | bosTau9 | GCF_002263795.1 | Falcon v. FEB-2016 | 1 | 75 | 75 | 25 | 25 | 75, 25, chr13:11061714-11061888 | plot bosTau9 |
066 | 2009 | bosTauMd3 | tbd | tbd | 789 | 670 | 463109 | 100 | 87080 | 923, 1, chr22:31476636-31478482 | plot bosTauMd3 |
067 | 2006 | braFlo1 | tbd | tbd | 31 | 484 | 14260 | 417 | 12668 | 375, 1, chrUn:879323570-879324320 | plot braFlo1 |
068 | 2008 | braFlo2 | tbd | tbd | 22 | 439 | 8529 | 411 | 9064 | 36, 1, Bf_V2_248:1229532-1229604 | plot braFlo2 |
069 | 1880 | braRap1 | GCF_000309985.1 | SOAPdenovo v. 1.04 | 12 | 104 | 3193 | 2810 | 47557 | 587, 472, chrUn_JH977260:73788-75433 | plot braRap1 |
070 | 2007 | bruMal1 | tbd | tbd | 55 | 50 | 6093 | 1 | 18780 | 87, 1, Bmal_supercontig14387:293-467 | plot bruMal1 |
071 | 2014 | bruMal2 | tbd | tbd | 46 | 124.5 | 12221 | 431.5 | 63506 | 1000, 20, Bmal_v3_scaffold83:22898-24917 | plot bruMal2 |
072 | 2013 | bubBub1 | GCF_000471725.1 | MaSuRCA v. 1.8.3 | 2383 | 163 | 395268 | 100 | 251657 | 990, 100, KI418684:2409965-2412044 | plot bubBub1 |
073 | 2014 | bucRhi1 | GCF_000710305.1 | SOAPdenovo v. 1.6 | 31 | 114 | 5089 | 78 | 3263 | 327, 10, KL526600:8925-9588 | plot bucRhi1 |
075 | 2011 | burXyl1 | tbd | tbd | 65 | 601 | 33110 | 301 | 19553 | 977, 300, scaffold00460:102617-104870 | plot burXyl1 |
076 | 2010 | caeAng1 | GCA_000165025.1 | Velvet v. 0.7.56 | 414 | 41 | 16726 | 2 | 1802 | 46, 2, scafRNAPATH105:2285-2378 | plot caeAng1 |
077 | 2012 | caeAng2 | tbd | tbd | 461 | 46 | 19505 | 2 | 1495 | 46, 2, Cang_2012_03_13_00008:384957-385050 | plot caeAng2 |
078 | 2008 | caeJap1 | tbd | tbd | 135 | 58 | 10431 | 186 | 27893 | 687, 10, chrUn:37794313-37795696 | plot caeJap1 |
079 | 2009 | caeJap2 | tbd | tbd | 765 | 103 | 130030 | 1018 | 891958 | 707, 10, chrUn:150512438-150513861 | plot caeJap2 |
080 | 1880 | caeJap2a | tbd | tbd | 764 | 103 | 129273 | 1018 | 890958 | 707, 10, Cjap_Contig4853:3969-5392 | plot caeJap2a |
082 | 2010 | caeJap4 | GCA_000147155.1 | Celera assembler v. 6.0 | 16 | 98.5 | 3188 | 20 | 1468 | 1000, 20, Scaffold17129:65445-67464 | plot caeJap4 |
083 | 2007 | caePb1 | tbd | tbd | 115 | 44 | 9160 | 164 | 37674 | 476, 10, chrUn:52430125-52431086 | plot caePb1 |
084 | 2008 | caePb2 | tbd | tbd | 83 | 37 | 3814 | 222 | 63681 | 230, 10, chrUn:74484521-74484990 | plot caePb2 |
085 | 2010 | caePb3 | GCA_000143925.2 | PCAP v. 9/3/04 | 89 | 37 | 4915 | 222 | 74680 | 230, 10, Scfld02_75:384084-384553 | plot caePb3 |
086 | 2005 | caeRem1 | tbd | tbd | 58 | 96 | 10213 | 133.5 | 11238 | 678, 10, SuperCont3:723391-724756 | plot caeRem1 |
087 | 2006 | caeRem2 | tbd | tbd | 58 | 96 | 10213 | 133.5 | 11238 | 678, 10, chrUn:13919319-13920684 | plot caeRem2 |
088 | 2007 | caeRem3 | tbd | tbd | 46 | 50 | 5760 | 197.5 | 14178 | 460, 10, chrUn:27560772-27561701 | plot caeRem3 |
089 | 2007 | caeRem4 | GCF_000149515.1 | tbd | 46 | 50 | 5760 | 197.5 | 14178 | 460, 10, Crem_Contig253:25277-26206 | plot caeRem4 |
090 | 2010 | caeSp111 | GCA_000186765.1 | Celera assembler v. 6.0 | 4 | 194.5 | 760 | 20 | 80 | 333, 20, Scaffold629:32984714-32985399 | plot caeSp111 |
091 | 2012 | caeSp51 | tbd | tbd | 14 | 34 | 730 | 12.5 | 894 | 201, 3, Csp5_scaffold_09411:792-1196 | plot caeSp51 |
092 | 2010 | caeSp71 | tbd | tbd | 535 | 47 | 30250 | 213 | 312209 | 162, 20, Scaffold11:29462-29805 | plot caeSp71 |
093 | 2010 | caeSp91 | tbd | tbd | 26 | 217.5 | 7172 | 8745 | 180575 | 1000, 20, Scaffold7498:303469-305488 | plot caeSp91 |
094 | 2014 | calAnn1 | GCF_000699085.1 | SOAPdenovo v. 1.6 | 89 | 127 | 16337 | 1006 | 168943 | 440, 38, KL218155:301090-302007 | plot calAnn1 |
095 | 2007 | calJac1 | tbd | tbd | 1597 | 42 | 129367 | 182 | 377725 | 937, 10, Contig4771:110891-112774 | plot calJac1 |
096 | 2009 | calJac3 | GCF_000004665.1 | PCAP v. 2009 | 1516 | 43 | 116646 | 183.5 | 452860 | 807, 10, chr3:111956760-111958383 | plot calJac3 |
097 | 2013 | calMil1 | GCF_000165045.1 | Celera v. 6.1 | 31 | 123 | 8335 | 100 | 70257 | 1000, 100, KI635945:3331497-3333596 | plot calMil1 |
098 | 2011 | camFer1 | GCF_000311805.1 | SOAPdenovo v. V1.05 | 11 | 205 | 2059 | 129 | 2031 | 237, 2, KB018701:319294-319769 | plot camFer1 |
099 | 2004 | canFam1 | tbd | tbd | 12 | 153 | 2669 | 210.5 | 8118 | 104, 1, chr18:45376349-45376557 | plot canFam1 |
100 | 2005 | canFam2 | tbd | tbd | 32 | 199.5 | 8095 | 1 | 5245 | 746, 1, chrUn:76334072-76335564 | plot canFam2 |
101 | 2011 | canFam3 | GCF_000002285.3 | Arachne v. April 2010 | 34 | 175.5 | 8234 | 10 | 4545 | 746, 10, chrUn_JH374132:3424-4925 | plot canFam3 |
104 | 2014 | capCar1 | GCF_000700745.1 | SOAPdenovo v. 1.6 | 4 | 105 | 618 | 48 | 354 | 139, 26, KL359104:23556-23859 | plot capCar1 |
105 | 2012 | capHir1 | GCF_000317765.1 | SOAPdenovo v. 1.03 | 627 | 41 | 71810 | 100 | 546475 | 988, 16, chr16:40339512-40341503 | plot capHir1 |
106 | 2014 | carCri1 | GCF_000690535.1 | SOAPdenovo v. 1.6 | 4 | 161 | 644 | 210.5 | 878 | 52, 13, KK509558:67998-68114 | plot carCri1 |
107 | 2017 | casCan1 | GCF_001984765.1 | ABySS v. 1.9.0; Canu v. 1.2; Platanus v. 1.2.4 | 19 | 90 | 2464 | 100 | 1900 | 952, 100, NW_017870822v1:53223-55226 | plot casCan1 |
108 | 2014 | cavApe1 | tbd | tbd | 551 | 47 | 32236 | 24 | 184424 | 82, 1, AVPZ01000046v1:610580-610744 | plot cavApe1 |
109 | 2005 | cavPor2 | tbd | tbd | 393 | 427 | 164744 | 100 | 166667 | 986, 100, scaffold_291164:123135-125206 | plot cavPor2 |
110 | 2008 | cavPor3 | GCF_000151735.1 | unknown v. before 2008 | 3 | 145 | 552 | 100 | 961 | 313, 100, scaffold_799:9280-10005 | plot cavPor3 |
111 | 2002 | cb1 | tbd | tbd | 81 | 163 | 20408 | 145 | 39126 | 645, 10, chrUn:51532611-51533910 | plot cb1 |
112 | 2005 | cb2 | tbd | tbd | 86 | 153 | 21033 | 163.5 | 42461 | 645, 10, chrI:9244132-9245431 | plot cb2 |
113 | 2007 | cb3 | tbd | tbd | 80 | 148.5 | 19176 | 166.5 | 39580 | 645, 10, chrI:9355978-9357277 | plot cb3 |
114 | 2011 | cb4 | tbd | tbd | 86 | 153 | 20969 | 151.5 | 40114 | 645, 10, chrI:11247250-11248549 | plot cb4 |
125 | 2016 | cebCap1 | GCF_001604975.1 | AllPaths-LG v. October 2015 | 1519 | 64 | 128197 | 1 | 415272 | 1000, 1, NW_016107342v1:6176614-6178614 | plot cebCap1 |
126 | 2015 | cerAty1 | GCF_000955945.1 | AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9 | 433 | 92 | 41269 | 50 | 137883 | 865, 25, NW_012007258v1:11321204-11322958 | plot cerAty1 |
127 | 2012 | cerSim1 | GCF_000283155.1 | ALLPATHS v. R41370 | 1818 | 68 | 129697 | 100 | 270005 | 815, 100, JH767775:6384924-6386653 | plot cerSim1 |
128 | 2014 | chaVoc1 | GCF_000708025.1 | SOAPdenovo v. 1.6 | 47 | 200 | 13700 | 1514 | 133699 | 780, 257, KL409415:13594818-13596634 | plot chaVoc1 |
129 | 2014 | chaVoc2 | GCF_000708025.1 | SOAPdenovo v. 1.6 | 47 | 200 | 13700 | 1514 | 133699 | 780, 257, KL873469:13594818-13596634 | plot chaVoc2 |
130 | 2013 | cheMyd1 | GCF_000344595.1 | SOAPdenovo v. 1.05 | 129 | 204 | 37111 | 798 | 277853 | 314, 27, KB535131:1778822-1779476 | plot cheMyd1 |
131 | 2012 | chiLan1 | GCA_000276665.1 | ALLPATHS v. R40776 | 1183 | 70 | 101029 | 100 | 267937 | 996, 100, JH721987:2542897-2544988 | plot chiLan1 |
132 | 2013 | chlSab1 | tbd | tbd | 23634 | 81 | 2123928 | 10 | 396229 | 923, 1, chrX:117110178-117112024 | plot chlSab1 |
133 | 2014 | chlSab2 | GCF_000409795.2 | ALLPATHS and Newbler v. 13-Feb-2013 | 23631 | 81 | 2123656 | 10 | 396199 | 923, 1, chrX:117110178-117112024 | plot chlSab2 |
134 | 2014 | chlUnd1 | GCF_000695195.1 | SOAPdenovo v. 1.6 | 5 | 293 | 1223 | 129 | 617 | 310, 65, KK747264:28313-28997 | plot chlUnd1 |
135 | 2008 | choHof1 | GCA_000164785.1 | tbd | 104 | 54.5 | 14520 | 145.5 | 33892 | 986, 100, scaffold_56240:3133-5204 | plot choHof1 |
136 | 2012 | chrAsi1 | GCF_000296735.1 | allpaths v. R42316 HAPLOIDIFY=True | 3416 | 76 | 339291 | 100 | 720504 | 991, 100, JH823765:402000-404081 | plot chrAsi1 |
137 | 2011 | chrPic1 | tbd | tbd | 7555 | 79 | 738667 | 50 | 1230115 | 64, 1, JH584466:5301285-5301413 | plot chrPic1 |
138 | 2014 | chrPic2 | GCA_000241765.2 | Newbler v. 2.6 | 6315 | 77 | 629230 | 206 | 2593694 | 1000, 10, chrUn_KK083066v1:1300793-1302802 | plot chrPic2 |
139 | 2002 | ci1 | GCA_000183065.1 | tbd | 28 | 311.5 | 8955 | 50 | 11060 | 833, 50, Scaffold_7:289989-291704 | plot ci1 |
140 | 2005 | ci2 | tbd | tbd | 2 | 472.5 | 945 | 173 | 346 | 843, 296, scaffold_403:40134-42115 | plot ci2 |
141 | 2011 | ci3 | GCF_000224145.1 | tbd | 22 | 258.5 | 6455 | 50 | 9493 | 597, 50, chrUn_NW_004190451v1:5050-6293 | plot ci3 |
142 | 2003 | cioSav1 | tbd | tbd | 8 | 124 | 1554 | 100 | 2755 | 296, 100, ps_146:263977-264668 | plot cioSav1 |
143 | 2005 | cioSav2 | tbd | tbd | 6 | 402.5 | 2394 | 200 | 1668 | 636, 10, reftig_72:2536022-2537303 | plot cioSav2 |
144 | 2015 | colAng1 | GCF_000951035.1 | AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 | 5690 | 77 | 626146 | 50 | 1472786 | 996, 50, NW_012119888v1:35718-37759 | plot colAng1 |
145 | 2013 | colLiv1 | GCF_000337935.1 | SOAPdenovo v. 2.0 | 19 | 116 | 3824 | 1290 | 32865 | 33, 57, KB379196:2050-2172 | plot colLiv1 |
146 | 2014 | colStr1 | GCF_000690715.1 | SOAPdenovo v. 1.6 | 5 | 161 | 910 | 308 | 1203 | 362, 113, KK530485:3407-4243 | plot colStr1 |
147 | 2012 | conCri1 | GCF_000260355.1 | AllPaths v. 2012 | 1110 | 72 | 108033 | 100 | 233431 | 924, 100, JH655880:49229854-49231801 | plot conCri1 |
148 | 2014 | corBra1 | GCF_000691975.1 | SOAPdenovo v. 1.6 | 41 | 90 | 7520 | 1445 | 112176 | 259, 28, KK718436:193091-193636 | plot corBra1 |
149 | 2014 | corCor1 | GCF_000738735.1 | AllPaths v. Allpaths-LG version 41687 | 21 | 81 | 2189 | 1027 | 27602 | 81, 1, KL997637:955359-955521 | plot corCor1 |
150 | 2013 | cotJap1 | GCA_000511605.1 | Soapdenovo v. 1.0.5b; bwa v. 0.5.9; SSPACE v. 1.2 | 1122 | 33 | 38101 | 68 | 67651 | 214, 1, DF262918:84572-85000 | plot cotJap1 |
151 | 2016 | cotJap2 | GCF_001577835.1 | ALLPATHS-LG v. 4.7.0 | 628 | 81 | 49843 | 1 | 166844 | 808, 1, chr2:125266985-125268601 | plot cotJap2 |
152 | 2013 | criGri1 | GCF_000419365.1 | SOAPdenovo v. 2.2 | 588 | 217 | 196516 | 1481.5 | 1359815 | 422, 10, KE379019:554914-555767 | plot criGri1 |
153 | 2011 | criGriChoV1 | GCF_000223135.1 | SOAPdenovo v. 1.05 | 213 | 162 | 53736 | 1526 | 472877 | 369, 10, NW_003615838v1:158557-159304 | plot criGriChoV1 |
154 | 2017 | criGriChoV2 | tbd | tbd | 9581 | 199 | 1595358 | 100 | 961598 | 293, 30, LT883673v1:24540519-24541134 | plot criGriChoV2 |
155 | 2014 | cucCan1 | GCF_000709325.1 | SOAPdenovo v. 1.6 | 113 | 242 | 41656 | 972 | 203191 | 961, 69, KL448150:311854-313844 | plot cucCan1 |
156 | 2014 | cynSem1 | GCF_000523025.1 | SOAPdenovo v. April-2011 | 78 | 311.5 | 27891 | 935.5 | 165198 | 568, 38, chr11:13981930-13983103 | plot cynSem1 |
157 | 2014 | cypVar1 | GCA_000732505.1 | AllPaths v. May 2014 | 3240 | 89 | 423504 | 1 | 2210432 | 1000, 1, KL653732:89449-91449 | plot cypVar1 |
158 | 2003 | danRer1 | tbd | tbd | 1280 | 57 | 186413 | 10 | 322061 | 1000, 10, chr25:16217228-16219237 | plot danRer1 |
159 | 2014 | danRer10 | GCF_000002035.5 | tbd | 575 | 174 | 105525 | 10 | 17550 | 484, 10, chr5:1032421-1033398 | plot danRer10 |
160 | 2017 | danRer11 | GCF_000002035.6 | tbd | 127 | 124 | 25120 | 100 | 12650 | 42, 1, chr16:27147800-27147884 | plot danRer11 |
161 | 2004 | danRer2 | tbd | tbd | 1150 | 58 | 191859 | 10 | 223764 | 1000, 10, chr10:26174984-26176993 | plot danRer2 |
162 | 2005 | danRer3 | tbd | tbd | 819 | 58 | 88143 | 10 | 121196 | 776, 10, chrUn:112388525-112390086 | plot danRer3 |
163 | 2006 | danRer4 | tbd | tbd | 726 | 65.5 | 121967 | 14 | 135012 | 705, 11, chr25:30060270-30061690 | plot danRer4 |
164 | 2007 | danRer5 | tbd | tbd | 1559 | 170 | 288298 | 100 | 155702 | 73, 1, chr21:35548773-35548919 | plot danRer5 |
165 | 2008 | danRer6 | tbd | tbd | 1421 | 133 | 225674 | 100 | 142101 | 1000, 100, Zv8_scaffold431:54613-56712 | plot danRer6 |
166 | 2010 | danRer7 | GCF_000002035.4 | tbd | 1245 | 164 | 217595 | 100 | 124500 | 900, 100, chr22:2241720-2243619 | plot danRer7 |
167 | 2005 | dasNov1 | tbd | tbd | 55 | 123 | 12971 | 111 | 31368 | 681, 100, scaffold_3005:3743-5204 | plot dasNov1 |
168 | 2008 | dasNov2 | tbd | tbd | 109 | 136 | 25865 | 100 | 58752 | 836, 100, scaffold_3394:70496-72267 | plot dasNov2 |
169 | 2011 | dasNov3 | GCF_000208655.1 | Celera Assembler v. 6.0; Atlas-Link; Atlas-Gap-Fill | 239 | 46 | 16270 | 50 | 94236 | 677, 50, JH564516:24848-26251 | plot dasNov3 |
170 | 2014 | dicLab1 | GCA_000689215.1 | tbd | 275 | 423 | 116519 | 203 | 134149 | 994, 20, HG916850:2956140-2958147 | plot dicLab1 |
171 | 2008 | dipOrd1 | GCA_000151885.1 | tbd | 219 | 46 | 46012 | 379 | 102683 | 1000, 100, scaffold_2463:9467-11566 | plot dipOrd1 |
172 | 2014 | dipOrd2 | GCF_000151885.1 | AllPaths LG v. 41070; Atlas Link v. 2.0; Atlas GapFill v. 2.0 | 3290 | 64.5 | 258868 | 50 | 821432 | 981, 50, NW_012267268v1:6944272-6946283 | plot dipOrd2 |
173 | 2013 | dirImm1 | tbd | tbd | 505 | 175 | 132528 | 2 | 32073 | 999, 1, nDi_2_2_scaf00035:47420-49418 | plot dirImm1 |
174 | 2003 | dm1 | tbd | tbd | 9 | 252 | 2984 | 20 | 1237 | 604, 20, chrU:5250525-5251752 | plot dm1 |
175 | 2004 | dm2 | tbd | tbd | 8 | 362 | 2818 | 20 | 1217 | 604, 20, chrU:5250525-5251752 | plot dm2 |
176 | 2006 | dm3 | tbd | tbd | 20 | 286 | 4907 | 100 | 423940 | 276, 20, chrU:4943122-4943693 | plot dm3 |
177 | 2014 | dm6 | GCF_000001215.4 | tbd | 15 | 333 | 4828 | 100 | 1340 | 276, 20, chrUn_DS483709v1:12934-13505 | plot dm6 |
178 | 2003 | dp2 | tbd | tbd | 113 | 64 | 11633 | 10 | 9049 | 784, 10, Contig4969_Contig4496:202614-204191 | plot dp2 |
179 | 2004 | dp3 | tbd | tbd | 136 | 79.5 | 17354 | 79.5 | 14988 | 485, 11, chrU:7044759-7045739 | plot dp3 |
180 | 2006 | dp4 | tbd | tbd | 183 | 81 | 19720 | 50 | 18528 | 798, 50, chrXL_group1e:8376310-8377955 | plot dp4 |
181 | 2012 | droAlb1 | GCA_000298335.1 | SOAPdenovo v. 1.04 | 4360 | 30 | 131320 | 22 | 152454 | 76, 1, JH853217:889-1041 | plot droAlb1 |
182 | 2004 | droAna1 | tbd | tbd | 103 | 252 | 28853 | 100 | 10300 | 943, 100, 2448822:95133-97118 | plot droAna1 |
183 | 2005 | droAna2 | tbd | tbd | 32 | 160 | 7905 | 701 | 72786 | 791, 25, scaffold_13266:420335-421941 | plot droAna2 |
184 | 2006 | droAna3 | GCF_000005115.1 | tbd | 35 | 143 | 8663 | 671 | 75001 | 707, 25, scaffold_13230:483470-484908 | plot droAna3 |
185 | 2013 | droBia2 | GCA_000233415.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 14 | 116.5 | 2103 | 20 | 294 | 447, 20, KB462730:148150-149063 | plot droBia2 |
186 | 2013 | droBip2 | GCA_000236285.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0 | 26 | 103.5 | 3925 | 20 | 520 | 409, 20, KB464242:790791-791628 | plot droBip2 |
187 | 2013 | droEle2 | GCA_000224195.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 22 | 205 | 4879 | 20 | 440 | 480, 20, KB458480:1051747-1052726 | plot droEle2 |
188 | 2005 | droEre1 | tbd | tbd | 8 | 86.5 | 1545 | 731 | 6855 | 773, 25, scaffold_4784:23686196-23687766 | plot droEre1 |
189 | 2006 | droEre2 | GCF_000005135.1 | tbd | 14 | 221 | 4384 | 239 | 7433 | 763, 25, scaffold_4784:18133045-18134595 | plot droEre2 |
190 | 2013 | droEug2 | GCA_000236325.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 17 | 52 | 1627 | 20 | 237 | 72, 1, AFPQ02002129:815-959 | plot droEug2 |
191 | 2013 | droFic2 | GCA_000220665.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 11 | 352 | 3277 | 20 | 220 | 424, 20, KB457328:1582-2449 | plot droFic2 |
192 | 2005 | droGri1 | tbd | tbd | 17 | 76 | 2908 | 444 | 11143 | 734, 312, scaffold_24659:1579-3358 | plot droGri1 |
193 | 2006 | droGri2 | GCF_000005155.2 | tbd | 48 | 60.5 | 5904 | 430.5 | 52107 | 774, 25, scaffold_15245:16809148-16810720 | plot droGri2 |
194 | 2013 | droKik2 | GCA_000224215.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 12 | 102 | 1812 | 20 | 1721 | 361, 20, KB458730:24774-25515 | plot droKik2 |
195 | 2013 | droMir2 | GCA_000269505.2 | Newbler v. 2.6 | 122 | 72 | 16465 | 10 | 57520 | 1000, 10, chr2:9770771-9772780 | plot droMir2 |
197 | 2005 | droMoj2 | tbd | tbd | 22 | 219.5 | 7748 | 366.5 | 30847 | 969, 25, scaffold_6496:4573125-4575087 | plot droMoj2 |
198 | 2006 | droMoj3 | GCF_000005175.2 | tbd | 16 | 343 | 6118 | 426 | 29359 | 859, 25, scaffold_6496:14181729-14183471 | plot droMoj3 |
199 | 2005 | droPer1 | GCF_000005195.2 | tbd | 28 | 402 | 10502 | 100 | 10914 | 937, 100, super_12:105769-107742 | plot droPer1 |
200 | 2013 | droPse3 | GCF_000001765.3 | PBJelly v. 12.8.2; Atlas genome assembly | 12 | 51 | 1309 | 86 | 3307 | 718, 50, chr3:13529933-13531418 | plot droPse3 |
201 | 2013 | droRho2 | GCA_000236305.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 35 | 167 | 7228 | 20 | 1286 | 454, 20, KB451407:7018-7945 | plot droRho2 |
202 | 2005 | droSec1 | GCA_000005215.1 | tbd | 17 | 399 | 6822 | 100 | 5318 | 765, 100, super_59:77146-78775 | plot droSec1 |
203 | 2005 | droSim1 | tbd | tbd | 109 | 106 | 23001 | 298 | 40703 | 801, 10, chr2L:4623692-4625303 | plot droSim1 |
204 | 2014 | droSim2 | GCF_000754195.2 | Velvet v. 1.1.04 | 104 | 58 | 5999 | 10 | 1818 | 359, 8, chr2R:7425888-7426613 | plot droSim2 |
205 | 2013 | droSuz1 | GCA_000472105.1 | SOAPdenovo v. 2 | 71 | 185 | 16489 | 1565 | 196054 | 364, 76, KI420423:11753-12556 | plot droSuz1 |
206 | 2013 | droTak2 | GCA_000224235.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 13 | 102 | 2070 | 20 | 260 | 472, 20, KB461286:709634-710597 | plot droTak2 |
207 | 2004 | droVir1 | tbd | tbd | 48 | 328.5 | 15839 | 25 | 16648 | 698, 25, scaffold_10:2740496-2741916 | plot droVir1 |
208 | 2005 | droVir2 | tbd | tbd | 13 | 232 | 3421 | 1415 | 46365 | 503, 25, scaffold_13324:149342-150372 | plot droVir2 |
209 | 2006 | droVir3 | GCF_000005245.1 | tbd | 12 | 341 | 4206 | 1536.5 | 45200 | 423, 25, scaffold_13324:149231-150101 | plot droVir3 |
210 | 2006 | droWil1 | GCF_000005925.1 | tbd | 23 | 248 | 8712 | 1330 | 51159 | 759, 50, scaffold_181150:697726-699293 | plot droWil1 |
211 | 2006 | droWil2 | GCF_000005925.1 | tbd | 23 | 248 | 8712 | 1330 | 51159 | 759, 50, CH964291:697726-699293 | plot droWil2 |
212 | 2004 | droYak1 | tbd | tbd | 65 | 340 | 25549 | 250 | 24358 | 955, 50, chrU:40768288-40770247 | plot droYak1 |
213 | 2005 | droYak2 | tbd | tbd | 99 | 170 | 26922 | 54 | 37713 | 684, 10, chr2L:22155365-22156742 | plot droYak2 |
214 | 2006 | droYak3 | GCF_000005975.2 | tbd | 85 | 143 | 20479 | 10 | 23713 | 684, 10, chr2L:22155365-22156742 | plot droYak3 |
217 | 2005 | echTel1 | tbd | tbd | 89 | 83 | 17114 | 100 | 22024 | 805, 100, scaffold_272928:13200-14909 | plot echTel1 |
218 | 2012 | echTel2 | GCF_000313985.1 | ALLPATHS v. R37599 | 3871 | 93 | 620444 | 100 | 656358 | 998, 100, JH980317:1376657-1378752 | plot echTel2 |
219 | 2014 | egrGar1 | GCF_000687185.1 | SOAPdenovo v. 1.6 | 112 | 213.5 | 33121 | 1093.5 | 229589 | 998, 134, KK502338:445846-447975 | plot egrGar1 |
220 | 2013 | eidHel1 | GCA_000465285.1 | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | 27 | 45 | 1294 | 1 | 186 | 68, 1, KE769079:2720-2856 | plot eidHel1 |
221 | 2012 | eleEdw1 | GCF_000299155.1 | allpaths v. R42301 HAPLOIDIFY=True | 1643 | 71 | 141553 | 100 | 311199 | 1000, 100, JH947463:2106240-2108339 | plot eleEdw1 |
222 | 2012 | eptFus1 | GCF_000308155.1 | ALLPATHS v. R40371 | 1641 | 75 | 188916 | 100 | 378407 | 988, 100, JH977647:11513546-11515621 | plot eptFus1 |
223 | 2007 | equCab1 | tbd | tbd | 17 | 457 | 5982 | 100 | 6200 | 715, 100, chr2:10720193-10721722 | plot equCab1 |
224 | 2007 | equCab2 | tbd | tbd | 4 | 160.5 | 610 | 1909 | 18507 | 258, 295, chr22:17653073-17653883 | plot equCab2 |
225 | 2018 | equCab3 | GCF_002863925.1 | Celera Assembler v. 2017; HiRise v. 2017 | 41 | 666 | 24283 | 1000 | 38458 | 949, 20, chr10:36118300-36120217 | plot equCab3 |
226 | 2014 | equPrz1 | GCA_000696695.1 | SOAPdenovo v. 1.05 | 39 | 49 | 5163 | 49 | 12408 | 78, 11, KK955445:38997-39163 | plot equPrz1 |
227 | 2006 | eriEur1 | tbd | tbd | 343 | 435 | 146738 | 100 | 209198 | 1000, 100, scaffold_366352:52823-54922 | plot eriEur1 |
228 | 2012 | eriEur2 | GCF_000296755.1 | allpaths v. R41008 | 3596 | 70 | 265454 | 100 | 1205265 | 1000, 100, JH835375:3514396-3516495 | plot eriEur2 |
229 | 2014 | esoLuc1 | GCA_000721915.1 | AllPaths v. 43500 | 9785 | 81 | 734131 | 15 | 1227519 | 950, 10, LG19:14032217-14034126 | plot esoLuc1 |
231 | 2015 | eulFla1 | tbd | tbd | 29206 | 139 | 4756877 | 1 | 60241 | 986, 1, LGHW01004502v1:47323-49295 | plot eulFla1 |
232 | 2015 | eulMac1 | tbd | tbd | 41489 | 62 | 3147719 | 53 | 2639442 | 393, 1, LGHX01000676v1:768695-769481 | plot eulMac1 |
233 | 2014 | eurHel1 | GCF_000690775.1 | SOAPdenovo v. 1.6 | 2 | 89.5 | 179 | 436 | 872 | 113, 451, KK569808:53808-54484 | plot eurHel1 |
235 | 2013 | falChe1 | GCF_000337975.1 | SOAPdenovo v. 1.4 | 27 | 206 | 7614 | 685 | 35918 | 51, 10, KB397780:7020361-7020472 | plot falChe1 |
236 | 2013 | falPer1 | GCF_000337955.1 | SOAPdenovo v. 1.4 | 6 | 48.5 | 530 | 631.5 | 4836 | 36, 10, KB391040:3398436-3398517 | plot falPer1 |
237 | 1880 | felCat1 | tbd | tbd | 1343 | 353 | 504058 | 874 | 2708782 | 1000, 100, scaffold_217423:45453-47552 | plot felCat1 |
238 | 2006 | felCat3 | tbd | tbd | 1343 | 353 | 504058 | 874 | 2708782 | 1000, 100, scaffold_217423:45453-47552 | plot felCat3 |
239 | 2008 | felCat4 | GCA_000003115.1 | tbd | 9736 | 503 | 4582767 | 10 | 9398414 | 1000, 10, chrA2:8725380-8727389 | plot felCat4 |
240 | 2011 | felCat5 | GCF_000181335.1 | Celera Assembler v. 6.1 | 27 | 72 | 6437 | 20 | 100569 | 488, 20, chrB2:22462351-22463346 | plot felCat5 |
241 | 2014 | felCat8 | GCF_000181335.2 | CABOG v. 6.2; MaSuRCA assembler v. 8.0; GAA v. 1.0 | 630 | 55 | 50300 | 10 | 89447 | 895, 14, chrB3:27250577-27252380 | plot felCat8 |
243 | 2013 | ficAlb1 | GCF_000247815.1 | SOAPdenovo v. 1.05 | 632 | 77 | 75592 | 40.5 | 206854 | 982, 1, chr7:28154426-28156390 | plot ficAlb1 |
244 | 2013 | ficAlb2 | GCF_000247815.1 | SOAPdenovo v. 1.05 | 632 | 77 | 75592 | 40.5 | 206854 | 982, 1, chr7:28154426-28156390 | plot ficAlb2 |
245 | 2002 | fr1 | tbd | tbd | 76 | 155.5 | 19306 | 50 | 16684 | 71, 1, chrUn:149577204-149577346 | plot fr1 |
246 | 2004 | fr2 | tbd | tbd | 5 | 313 | 1682 | 512 | 2231 | 47, 1, chrUn:336404518-336404612 | plot fr2 |
247 | 2011 | fr3 | GCF_000180615.1 | tbd | 6 | 229 | 1827 | 286 | 2291 | 47, 1, HE592038:5063-5157 | plot fr3 |
248 | 2014 | fukDam1 | GCF_000743615.1 | SOAPdenovo v. 1.06 | 793 | 203 | 238200 | 519 | 931836 | 991, 10, NW_011045963v1:25160-27151 | plot fukDam1 |
249 | 2014 | fulGla1 | GCF_000690835.1 | SOAPdenovo v. 1.6 | 8 | 336.5 | 2583 | 103.5 | 1637 | 450, 20, KK597768:8602-9521 | plot fulGla1 |
250 | 2010 | gadMor1 | GCA_000231765.1 | tbd | 168 | 53 | 11363 | 270 | 70748 | 51, 1, CAEA01526699:46-148 | plot gadMor1 |
251 | 2004 | galGal2 | tbd | tbd | 114 | 40 | 12930 | 124 | 17674 | 778, 21, chr3:68417113-68418689 | plot galGal2 |
252 | 2006 | galGal3 | tbd | tbd | 729 | 37 | 34199 | 500 | 325853 | 479, 10, chrUn_random:55035794-55036761 | plot galGal3 |
253 | 2011 | galGal4 | GCF_000002315.3 | Celera Assembler v. 5.4 | 55 | 401 | 22946 | 100 | 31537 | 805, 100, chr19:3903221-3904930 | plot galGal4 |
254 | 2015 | galGal5 | GCF_000002315.4 | MHAP/PBcR v. 8.2beta | 1 | 33 | 33 | 795 | 795 | 33, 795, chrUn_NT_465606v1:9086-9946 | plot galGal5 |
256 | 2014 | galVar1 | GCF_000696425.1 | SOAPdenovo2 v. April 2014 | 58964 | 61 | 5626241 | 419 | 24866346 | 997, 1, NW_007727116v1:311725-313719 | plot galVar1 |
257 | 2006 | gasAcu1 | tbd | tbd | 8 | 46.5 | 1970 | 117.5 | 2520 | 841, 100, chrUn:38727446-38729227 | plot gasAcu1 |
259 | 2009 | gavGan0 | tbd | tbd | 30236 | 134 | 5187944 | 5000 | 145799649 | 915, 10, scaffold24725:12789-14628 | plot gavGan0 |
260 | 2014 | gavSte1 | GCF_000690875.1 | SOAPdenovo v. 1.6 | 5 | 164 | 848 | 318 | 2312 | 269, 245, KK640233:828-1610 | plot gavSte1 |
261 | 2012 | geoFor1 | GCF_000277835.1 | SOAPdenovo v. 2.01 | 32 | 105.5 | 4877 | 945.5 | 51025 | 617, 11, JH739922:1318693-1319937 | plot geoFor1 |
263 | 2009 | gorGor2 | tbd | tbd | 6585 | 247 | 2365617 | 10 | 499615 | 1000, 10, chr10_101645027_418909:206049-208058 | plot gorGor2 |
264 | 2011 | gorGor3 | GCF_000151905.1 | tbd | 6926 | 246 | 2475426 | 10 | 533805 | 1000, 10, chr10:101539188-101541197 | plot gorGor3 |
265 | 2014 | gorGor4 | GCA_000151905.3 | tbd | 8691 | 94 | 1514940 | 25 | 982883 | 246, 1, chr9:24397320-24397812 | plot gorGor4 |
267 | 2009 | haeCon1 | tbd | tbd | 25 | 39 | 1031 | 10 | 1745 | 58, 10, Hcon_Contig0056815:13389-13514 | plot haeCon1 |
268 | 2013 | haeCon2 | tbd | tbd | 5378 | 149 | 831727 | 55 | 351011 | 700, 1, scaffold_63:260903-262303 | plot haeCon2 |
269 | 2014 | halAlb1 | GCF_000691405.1 | SOAPdenovo v. 1.6 | 11 | 126 | 1936 | 370 | 3807 | 466, 102, KK641449:26277-27310 | plot halAlb1 |
270 | 2014 | halLeu1 | GCF_000737465.1 | SOAPdenovo2 v. May 2014 | 14 | 280 | 4342 | 95 | 1676 | 194, 10, KL869356:8708537-8708934 | plot halLeu1 |
271 | 2011 | hapBur1 | GCF_000239415.1 | ALLPATHS-LG v. R35951 | 965 | 95 | 135908 | 20 | 374038 | 975, 20, JH425754:7557-9526 | plot hapBur1 |
273 | 2011 | hetBac1 | GCA_000223415.1 | Celera assembler v. 6.0 | 3 | 228 | 1282 | 20 | 60 | 1000, 20, GL996479v1:885362-887381 | plot hetBac1 |
274 | 2011 | hetGla1 | tbd | tbd | 743 | 313 | 285174 | 1994 | 2914751 | 785, 43, JH165660:4306-5918 | plot hetGla1 |
275 | 2012 | hetGla2 | GCF_000247695.1 | AllPaths v. R39605 | 595 | 70 | 44604 | 100 | 201552 | 1000, 100, JH602085:17402968-17405067 | plot hetGla2 |
276 | 2009 | hg19 | tbd | tbd | 1 | 200 | 200 | 3000000 | 3000000 | 200, 3000000, chrY:10104354-13104753 | plot hg19 |
277 | 2013 | hg38 | GCF_000001405.26 | tbd | 12 | 78 | 974 | 440 | 56689 | 125, 20, chrUn_KI270442v1:175618-175887 | plot hg38 |
281 | 2012 | jacJac1 | GCF_000280705.1 | ALLPATHS v. R41689 HAPLOIDIFY=True | 2666 | 63 | 196366 | 100 | 569918 | 1000, 100, JH725440:52488719-52490818 | plot jacJac1 |
282 | 2011 | latCha1 | GCF_000225785.1 | AllPaths v. R36819 | 2038 | 77 | 159059 | 100 | 504858 | 955, 100, JH127253:476850-478859 | plot latCha1 |
284 | 2014 | lepDis1 | GCF_000691785.1 | SOAPdenovo v. 1.6 | 1 | 50 | 50 | 229 | 229 | 50, 229, KK681583:9399-9727 | plot lepDis1 |
285 | 2011 | lepOcu1 | GCF_000242695.1 | AllPaths v. R38293 | 2079 | 95 | 232474 | 100 | 466733 | 1000, 100, chrLG4:37780111-37782210 | plot lepOcu1 |
286 | 2013 | lepWed1 | GCF_000349705.1 | allpaths v. R41856 HAPLOIDIFY=True | 2022 | 63 | 135843 | 100 | 1218867 | 1000, 100, KB715312:1023296-1025395 | plot lepWed1 |
287 | 2013 | letCam1 | GCA_000466285.1 | Newbler v. 2.7 | 1453 | 69 | 123952 | 100 | 739039 | 280, 39, KE994354:70338-70936 | plot letCam1 |
288 | 1880 | linHum0 | GCF_000217595.1 | CABOG v. 5.3 | 179 | 48 | 10176 | 100 | 20986 | 480, 100, NW_012159984:28893-29952 | plot linHum0 |
289 | 2013 | lipVex1 | GCF_000442215.1 | SOAPdenovo v. 2.01 | 292 | 92 | 66483 | 985.5 | 386576 | 876, 10, KE557659:158624-160385 | plot lipVex1 |
290 | 2012 | loaLoa1 | GCA_000183805.3 | Newbler v. 2.1-PreRelease-4/28/2009 | 376 | 382 | 123384 | 215 | 94547 | 604, 20, JH712068v1:803529-804756 | plot loaLoa1 |
291 | 2005 | loxAfr1 | tbd | tbd | 79 | 44 | 11426 | 206 | 80801 | 687, 284, scaffold_10531:71539-73196 | plot loxAfr1 |
292 | 2008 | loxAfr2 | tbd | tbd | 78 | 165.5 | 20735 | 1078 | 180887 | 989, 100, scaffold_3386:17920-19997 | plot loxAfr2 |
293 | 2009 | loxAfr3 | GCF_000001905.1 | tbd | 11 | 45 | 1924 | 398 | 9784 | 731, 100, scaffold_211:333226-334787 | plot loxAfr3 |
294 | 2007 | macEug1 | tbd | tbd | 7319 | 57 | 504656 | 10 | 562759 | 146, 1, Scaffold27901:25044-25336 | plot macEug1 |
295 | 2009 | macEug2 | GCA_000004035.1 | tbd | 11689 | 55 | 752361 | 50 | 1102638 | 146, 1, GL058785:13153-13445 | plot macEug2 |
296 | 2013 | macFas5 | GCF_000364345.1 | SOAPdenovo v. 1.0.5, SRPRISM v. 2.4; ARGO v. 0.1 | 1138 | 106.5 | 145024 | 204.5 | 1039415 | 849, 10, chr14:81860376-81862083 | plot macFas5 |
297 | 2015 | macNem1 | GCF_000956065.1 | AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2; PBJelly2 v. 14.9.9 | 1828 | 95 | 237662 | 50 | 834836 | 982, 25, NW_012016132v1:18826350-18828338 | plot macNem1 |
298 | 2015 | manLeu1 | GCF_000951045.1 | AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 | 6092 | 95 | 1723434 | 50 | 1354856 | 1000, 50, NW_012101473v1:89787-91836 | plot manLeu1 |
299 | 2014 | manPen1 | GCA_000738955.1 | SOAPdenovo v. May 2014 | 37129 | 101 | 5536376 | 1 | 13090743 | 1000, 1, KN006700:349054-351054 | plot manPen1 |
300 | 2014 | manVit1 | GCF_000692015.1 | SOAPdenovo v. 1.6 | 25 | 231 | 8844 | 1303 | 65245 | 701, 296, KK732740:655429-657126 | plot manVit1 |
302 | 2012 | mayZeb1 | GCF_000238955.1 | AllPaths v. R37043 | 1831 | 95 | 241336 | 100 | 682313 | 1000, 100, JH720538:3252564-3254663 | plot mayZeb1 |
303 | 2013 | megLyr1 | GCA_000465345.1 | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | 33 | 38 | 1716 | 1 | 185 | 83, 1, KI087181:1999-2165 | plot megLyr1 |
304 | 2009 | melGal1 | tbd | tbd | 834 | 127 | 136229 | 100 | 661041 | 169, 1, chr3:54352580-54352918 | plot melGal1 |
305 | 2014 | melGal5 | GCF_000146605.2 | MaSuRCA v. 1.9.2 | 84 | 181 | 17431 | 100 | 76065 | 724, 100, chrZ:7873702-7875249 | plot melGal5 |
308 | 2008 | melInc2 | tbd | tbd | 3 | 77 | 211 | 201 | 513 | 98, 201, MiV1ctg3:286050-286446 | plot melInc2 |
309 | 2011 | melUnd1 | GCF_000238935.1 | Celera v. 6.1 | 39 | 89 | 5925 | 41 | 36796 | 334, 20, JH556232:114057-114744 | plot melUnd1 |
310 | 2014 | merNub1 | GCF_000691845.1 | SOAPdenovo v. 1.6 | 2 | 154.5 | 309 | 361 | 722 | 245, 311, KK701714:10568-11368 | plot merNub1 |
311 | 2013 | mesAur1 | GCF_000349665.1 | allpaths v. R44683 | 3589 | 71 | 248381 | 100 | 755166 | 212, 100, KB708269:3930600-3931123 | plot mesAur1 |
312 | 2014 | mesUni1 | GCF_000695765.1 | SOAPdenovo v. 1.6 | 4 | 347 | 1434 | 124.5 | 451 | 332, 23, KK817080:7082-7768 | plot mesUni1 |
313 | 1880 | micMur0 | tbd | tbd | 295 | 256 | 90483 | 780 | 749299 | 997, 100, GeneScaffold_4747:166512-168605 | plot micMur0 |
314 | 2007 | micMur1 | GCA_000165445.1 | tbd | 124 | 124.5 | 33320 | 952.5 | 207469 | 969, 100, scaffold_5185:107104-109141 | plot micMur1 |
315 | 2015 | micMur2 | GCF_000165445.1 | AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9 | 774 | 90 | 85250 | 50 | 267164 | 999, 25, KQ057470v1:2292330-2294352 | plot micMur2 |
316 | 2017 | micMur3 | GCF_000165445.2 | AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9; Lachesis v. shendurelab-LACHESIS-2151de9; BioNano IrysSolve v. 2.1 | 325 | 95 | 73918 | 50 | 262987 | 898, 10, chr2:108635511-108637316 | plot micMur3 |
317 | 2012 | micOch1 | GCF_000317375.1 | allpaths v. R41985 HAPLOIDIFY=True SPRS_WRITE_SEPS=True | 6788 | 65 | 483435 | 100 | 1507707 | 993, 100, chr6:54381083-54383168 | plot micOch1 |
318 | 2011 | mm10 | tbd | tbd | 2 | 390.5 | 781 | 25879.5 | 51759 | 477, 1759, chrX_GL456233_random:239940-242652 | plot mm10 |
319 | 1880 | mm5 | tbd | tbd | 204 | 48.5 | 30180 | 100 | 76884 | 921, 100, chr6:132460596-132462537 | plot mm5 |
320 | 2005 | mm6 | tbd | tbd | 117 | 48 | 17647 | 100 | 48212 | 768, 100, chr14:100566071-100567706 | plot mm6 |
321 | 2005 | mm7 | tbd | tbd | 45 | 48 | 5475 | 100 | 64491 | 451, 100, chr15:68974498-68975499 | plot mm7 |
322 | 2006 | mm8 | tbd | tbd | 6 | 161 | 1257 | 162.5 | 50878 | 520, 353, chr14:87009574-87010966 | plot mm8 |
323 | 2007 | mm9 | tbd | tbd | 2 | 390.5 | 781 | 25879.5 | 51759 | 477, 1759, chrX_random:239940-242652 | plot mm9 |
324 | 2004 | monDom1 | tbd | tbd | 18 | 53.5 | 1891 | 127 | 11341 | 696, 100, scaffold_14754:178069-179560 | plot monDom1 |
325 | 2005 | monDom2 | tbd | tbd | 5 | 428 | 2012 | 100 | 520 | 870, 100, scaffold_38:23849795-23851634 | plot monDom2 |
326 | 2006 | monDom4 | tbd | tbd | 9 | 183 | 3070 | 1000 | 21732 | 870, 1, chr1:400420041-400421781 | plot monDom4 |
327 | 2006 | monDom5 | tbd | tbd | 9 | 183 | 3070 | 1000 | 21732 | 870, 1, chr1:424248968-424250708 | plot monDom5 |
328 | 2013 | musDom2 | GCF_000371365.1 | AllPathsLG v. September 2012 | 1284 | 85 | 165577 | 1 | 473996 | 1000, 1, KB855954:134298-136298 | plot musDom2 |
329 | 2011 | musFur1 | GCA_000215625.1 | ALLPATHS-LG v. R36167 | 1009 | 84 | 107706 | 44 | 286510 | 1000, 20, GL897138:9717-11736 | plot musFur1 |
330 | 2013 | myoBra1 | GCF_000412655.1 | SOAP de novo v. 2.04 | 356 | 119 | 85889 | 1109 | 766318 | 1000, 31, KE163605:2655193-2657223 | plot myoBra1 |
331 | 2012 | myoDav1 | GCF_000327345.1 | SOAPdenovo v. 1.06 | 303 | 151 | 56967 | 1283 | 942238 | 502, 19, KB106370:3092722-3093744 | plot myoDav1 |
332 | 2006 | myoLuc1 | tbd | tbd | 42 | 47 | 6392 | 1551 | 125787 | 388, 100, scaffold_150441:136761-137636 | plot myoLuc1 |
333 | 2010 | myoLuc2 | GCF_000147115.1 | Arachne v. Dev. Jan 2010 | 7 | 39 | 357 | 410 | 3363 | 75, 119, GL429781:8032929-8033197 | plot myoLuc2 |
334 | 2014 | nanGal1 | GCF_000622305.1 | SOAPdenovo v. 2.04.4 | 730 | 126 | 149781 | 902.5 | 980462 | 740, 12, KL200152:4088120-4089611 | plot nanGal1 |
335 | 2015 | nanPar1 | GCA_000935625.1 | SOAPdenovo v. 1.06 | 1716 | 194 | 477991 | 974 | 2590489 | 552, 12, KN907832v1:31307-32422 | plot nanPar1 |
336 | 2014 | nasLar1 | GCA_000772465.1 | phredPhrap v. 1.080812 | 614 | 43 | 93736 | 7 | 126885 | 117, 1, chr1:6190345-6190579 | plot nasLar1 |
337 | 2013 | necAme1 | GCF_000507365.1 | Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010 | 459 | 54 | 28538 | 100 | 92887 | 366, 100, KI657476v1:37386-38217 | plot necAme1 |
338 | 2007 | nemVec1 | tbd | tbd | 25 | 378 | 10288 | 829 | 17106 | 769, 1, scaffold_3968:6459-7997 | plot nemVec1 |
339 | 2011 | neoBri1 | GCF_000239395.1 | ALLPATHS-LG v. R36800 | 5040 | 95 | 1321574 | 20 | 665865 | 998, 20, JH422308:3325010-3327025 | plot neoBri1 |
340 | 2017 | neoSch1 | GCF_002201575.1 | RefAligner v. 5122; Supernova v. 1.1 | 882 | 47 | 69252 | 100 | 596284 | 888, 100, NW_018726759v1:1-1876 | plot neoSch1 |
341 | 2014 | nipNip1 | GCF_000708225.1 | SOAPdenovo v. 1.6 | 41 | 154 | 11937 | 1090 | 77358 | 514, 15, KL411148:2104426-2105468 | plot nipNip1 |
342 | 2010 | nomLeu1 | tbd | tbd | 859 | 141 | 220161 | 532 | 1139352 | 999, 100, GL397299:16863535-16865632 | plot nomLeu1 |
343 | 2011 | nomLeu2 | tbd | tbd | 859 | 141 | 220161 | 532 | 1139352 | 999, 100, GL397299:16863535-16865632 | plot nomLeu2 |
344 | 2012 | nomLeu3 | GCA_000146795.3 | tbd | 861 | 141 | 220464 | 519 | 1139552 | 999, 100, chr5:41669854-41671951 | plot nomLeu3 |
345 | 2014 | notCor1 | GCF_000735185.1 | Celera Assembler v. 7.0 | 174 | 91.5 | 17942 | 51 | 21717 | 407, 1, KL665414:596304-597118 | plot notCor1 |
346 | 1880 | ochPri0 | tbd | tbd | 569 | 101 | 138948 | 1065 | 1840608 | 994, 100, GeneScaffold_4726:276480-278567 | plot ochPri0 |
347 | 2008 | ochPri2 | GCA_000164825.1 | tbd | 313 | 55 | 35317 | 1365 | 1110261 | 967, 100, scaffold_3914:61889-63922 | plot ochPri2 |
348 | 2012 | ochPri3 | GCF_000292845.1 | Allpaths v. R41206 | 1958 | 69 | 148238 | 100 | 499781 | 890, 100, JH802177:1348834-1350713 | plot ochPri3 |
349 | 2012 | octDeg1 | GCF_000260255.1 | allpaths v. R40507 LITTLE_HELPS_BIG=False | 2582 | 68 | 231489 | 100 | 464548 | 985, 100, JH651571:12809669-12811738 | plot octDeg1 |
350 | 2013 | odoRosDiv1 | GCA_000321225.1 | AllPaths v. 41070; Atlas-link v. 1.0; Atlas-gapfill v. 2.2 | 2581 | 68 | 180258 | 50 | 263661 | 970, 50, KB229427:1083192-1085181 | plot odoRosDiv1 |
351 | 2013 | oncVol1 | GCA_000499405.1 | tbd | 10 | 89.5 | 2046 | 1 | 18211 | 739, 1, HG738137v1:12037947-12039425 | plot oncVol1 |
352 | 2014 | opiHoa1 | GCF_000692075.1 | SOAPdenovo v. 1.6 | 80 | 170.5 | 23360 | 1723.5 | 216549 | 855, 28, KK733898:82987-84724 | plot opiHoa1 |
353 | 2013 | orcOrc1 | GCF_000331955.2 | AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2 | 2677 | 66 | 181922 | 50 | 357696 | 943, 50, NW_004438742v1:126518-128453 | plot orcOrc1 |
354 | 2011 | oreNil1 | tbd | tbd | 1903 | 93 | 208888 | 20 | 734264 | 969, 20, GL831201:3474999-3476956 | plot oreNil1 |
356 | 2007 | ornAna1 | GCF_000002275.2 | tbd | 793 | 49 | 70053 | 103 | 148119 | 718, 10, Contig3645:38619-40064 | plot ornAna1 |
357 | 2007 | ornAna2 | GCA_000002275.2 | tbd | 793 | 49 | 70053 | 103 | 148119 | 718, 10, chrUn_DS182721v1:38619-40064 | plot ornAna2 |
358 | 2012 | oryAfe1 | GCF_000298275.1 | allpaths v. R40776 LITTLE_HELPS_BIG=False | 3595 | 65 | 293465 | 100 | 691489 | 998, 100, JH863829:9451309-9453404 | plot oryAfe1 |
359 | 2005 | oryCun1 | tbd | tbd | 122 | 278.5 | 44566 | 462.5 | 91832 | 978, 100, scaffold_172390:787-2842 | plot oryCun1 |
360 | 2009 | oryCun2 | GCF_000003625.3 | tbd | 12 | 44.5 | 836 | 446 | 9055 | 327, 185, chr13:6520795-6521633 | plot oryCun2 |
361 | 2006 | oryLat1 | tbd | tbd | 141 | 144 | 25310 | 10 | 215389 | 561, 10, chrUn:20300712-20301843 | plot oryLat1 |
362 | 2005 | oryLat2 | tbd | tbd | 141 | 144 | 25310 | 10 | 253399 | 445, 10, ultracontig221:437957-438856 | plot oryLat2 |
364 | 2011 | otoGar3 | GCF_000181295.1 | ALLPATHS-LG v. R35710 | 3569 | 86 | 332700 | 39 | 663694 | 985, 20, GL873641:2218538-2220527 | plot otoGar3 |
365 | 2010 | oviAri1 | GCA_000005525.1 | tbd | 5934 | 53 | 394316 | 37 | 1966190 | 264, 1, chr15:8985870-8986398 | plot oviAri1 |
366 | 2012 | oviAri3 | GCF_000298735.1 | SOAPdenovo v. 1.03 | 149 | 193 | 51933 | 215 | 178445 | 46, 3, chr3:3466521-3466615 | plot oviAri3 |
367 | 2015 | oviAri4 | GCF_000298735.2 | SOAPdenovo v. 1.03; PBJelly2 v. 14.9.9 | 123 | 285 | 48608 | 100 | 99192 | 46, 3, chr3:3435119-3435213 | plot oviAri4 |
368 | 2015 | oxyTri2 | tbd | tbd | 523 | 37 | 30028 | 50 | 25856 | 186, 1, chrMACsb310:15510646-15511018 | plot oxyTri2 |
369 | 2013 | panHod1 | GCF_000400835.1 | SOAPdenovo v. 2.1 | 321 | 129 | 65178 | 1092 | 702884 | 628, 10, KE118776:1218541-1219806 | plot panHod1 |
370 | 2012 | panPan1 | GCF_000258655.1 | Celera Assembler v. 5.4.3 | 63 | 133 | 11209 | 20 | 22114 | 33, 1, JH650468:842203-842269 | plot panPan1 |
371 | 2015 | panPan2 | tbd | tbd | 70 | 160 | 13388 | 20 | 1045522 | 35, 1, chr4:127787143-127787213 | plot panPan2 |
372 | 2013 | panRed1 | GCA_000341325.1 | Velvet v. 1.2.07 | 123 | 56 | 6626 | 10 | 3069 | 62, 10, KB454926:42673-42806 | plot panRed1 |
373 | 2013 | panTig1 | GCF_000464555.1 | SOAPdenovo v. 08-Jul-2011 | 59 | 111 | 12591 | 700 | 69429 | 398, 9, KE721804:6447970-6448774 | plot panTig1 |
374 | 2003 | panTro1 | tbd | tbd | 5719 | 388 | 2244063 | 100 | 3504041 | 998, 100, chr6:137473031-137475126 | plot panTro1 |
375 | 2006 | panTro2 | tbd | tbd | 692 | 52 | 62006 | 240 | 238273 | 717, 10, chr10_random:5205395-5206838 | plot panTro2 |
376 | 2010 | panTro3 | tbd | tbd | 472 | 54 | 44241 | 238.5 | 180280 | 908, 10, chr2B:124438762-124440587 | plot panTro3 |
377 | 2011 | panTro4 | GCF_000001515.6 | tbd | 472 | 54 | 44241 | 238.5 | 180280 | 908, 10, chr2B:124438762-124440587 | plot panTro4 |
378 | 2016 | panTro5 | GCF_000001515.7 | DiscoVar v. 51280; PBJelly v. 14.9.9 | 2937 | 199 | 537385 | 100 | 3625772 | 199, 10, chr12_NW_015974005v1_random:1130-1537 | plot panTro5 |
379 | 2018 | panTro6 | GCF_002880755.1 | tbd | 5 | 667 | 3499 | 100 | 18496 | 1000, 100, chr8:127452460-127454559 | plot panTro6 |
380 | 2012 | papAnu2 | GCF_000264685.1 | CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0 | 727 | 138 | 144060 | 50 | 96682 | 46, 1, chr4:20965571-20965663 | plot papAnu2 |
381 | 2013 | papAnu3 | GCF_000264685.2 | CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0 | 727 | 138 | 144060 | 50 | 96682 | 46, 1, chr4:20965571-20965663 | plot papAnu3 |
382 | 2017 | papAnu4 | GCF_000264685.3 | CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0; PBJelly2 v. 14.9.9; Pilon v. 1.18 | 368 | 238.5 | 95783 | 50 | 84582 | 703, 10, chrUn_NW_018824177v1:2651-4066 | plot papAnu4 |
383 | 2008 | papHam1 | tbd | tbd | 22041 | 56 | 1338445 | 50 | 2303596 | 376, 50, scaffold4259:86690-87491 | plot papHam1 |
384 | 2014 | pelCri1 | GCF_000687375.1 | SOAPdenovo v. 1.6 | 3 | 72 | 517 | 186 | 808 | 386, 173, KK471910:16412-17356 | plot pelCri1 |
385 | 2011 | pelSin1 | GCF_000230535.1 | SOAPdenovo v. 1.05 | 126 | 138 | 35062 | 411.5 | 167243 | 398, 10, JH212629:287260-288065 | plot pelSin1 |
386 | 2013 | perManBai1 | GCF_000500345.1 | Newbler v. 2.3 and 2.5; AllPaths v. 41070; ATLAS-gapfill v. 2.2; ATLAS-link v. 1.0 | 7908 | 80 | 846184 | 50 | 1552640 | 1000, 50, KI615759:2266069-2268118 | plot perManBai1 |
387 | 2007 | petMar1 | tbd | tbd | 542 | 47 | 48234 | 10 | 42185 | 746, 10, Contig3178:18125-19626 | plot petMar1 |
388 | 2010 | petMar2 | GCA_000148955.1 | Arachne v. 3.2 | 31 | 86 | 5681 | 732 | 39461 | 617, 100, GL479790:15647-16980 | plot petMar2 |
389 | 2017 | petMar3 | tbd | tbd | 40 | 242.5 | 11527 | 100 | 119063 | 718, 1, PIZI01000010v1:16691860-16693296 | plot petMar3 |
390 | 2014 | phaCar1 | GCF_000708925.1 | SOAPdenovo v. 1.6 | 2 | 206 | 412 | 79 | 158 | 261, 100, KL416242:66648-67269 | plot phaCar1 |
391 | 2014 | phaLep1 | GCF_000687285.1 | SOAPdenovo v. 1.6 | 14 | 179 | 2930 | 310 | 4227 | 343, 85, KK448216:3226-3996 | plot phaLep1 |
392 | 2014 | phoRub1 | GCA_000687265.1 | SOAPdenovo v. 1.6 | 4 | 288.5 | 1016 | 195.5 | 823 | 373, 83, KK425162:48893-49721 | plot phoRub1 |
393 | 2013 | phyCat1 | GCF_000472045.1 | AllPaths-LG v. January 2013 | 684 | 82.5 | 86555 | 100 | 130377 | 1000, 1, KI402232:538054-540054 | plot phyCat1 |
394 | 2014 | picPub1 | GCF_000699005.1 | SOAPdenovo v. 1.6 | 59 | 83 | 12175 | 970 | 106482 | 111, 28, KL217012:74310-74559 | plot picPub1 |
395 | 2013 | poeFor1 | GCF_000485575.1 | AllPaths-LG v. July 2013 | 848 | 75 | 84492 | 1 | 328834 | 972, 1, KI520524:847-2791 | plot poeFor1 |
396 | 2014 | poeRet1 | tbd | tbd | 1124 | 87 | 157426 | 1 | 421252 | 988, 1, chrLG12:26078504-26080480 | plot poeRet1 |
397 | 1880 | ponAbe1 | tbd | tbd | 1528 | 40 | 90824 | 133.5 | 275853 | 662, 10, Contig208:1185633-1186966 | plot ponAbe1 |
398 | 2007 | ponAbe2 | tbd | tbd | 2239 | 54 | 444541 | 100 | 829820 | 769, 1, chr11:46659515-46661053 | plot ponAbe2 |
400 | 2014 | priExs1 | tbd | tbd | 49 | 121 | 12100 | 1773 | 95166 | 181, 38, scaffold470:42605-43004 | plot priExs1 |
401 | 2007 | priPac1 | tbd | tbd | 121 | 49 | 10688 | 209 | 31254 | 90, 1, chrUn:114913780-114913960 | plot priPac1 |
403 | 2014 | priPac3 | tbd | tbd | 168 | 49.5 | 13153 | 274.5 | 50322 | 90, 1, Ppa_Contig2432:805-985 | plot priPac3 |
404 | 2008 | proCap1 | GCA_000152225.1 | Arachne v. before 2009 | 116 | 38 | 5205 | 534.5 | 65619 | 53, 100, scaffold_8867:32393-32598 | plot proCap1 |
405 | 2015 | proCoq1 | GCF_000956105.1 | AllPathsLG v. R43839; Atlas Link v. 1.0; Atlas Gapfill v. 2.2 | 1491 | 92 | 191552 | 50 | 427249 | 970, 50, NW_012149019v1:36737-38726 | plot proCoq1 |
406 | 2013 | pseHum1 | GCF_000331425.1 | SOAPdenovo v. 1.5 | 775 | 142 | 173055 | 10 | 547111 | 1000, 10, KB221227:5459003-5461012 | plot pseHum1 |
407 | 2012 | pteAle1 | GCA_000325575.1 | SOAPdenovo v. 1.06 | 97 | 127 | 19728 | 1023 | 161616 | 421, 16, KB031157:14150143-14151000 | plot pteAle1 |
408 | 2014 | pteGut1 | GCF_000699245.1 | SOAPdenovo v. 1.6 | 1 | 282 | 282 | 720 | 720 | 282, 720, KL237369:530-1813 | plot pteGut1 |
409 | 2013 | ptePar1 | GCA_000465405.1 | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | 3 | 31 | 102 | 1 | 3 | 40, 1, KE827285:1815-1895 | plot ptePar1 |
410 | 2008 | pteVam1 | GCA_000151845.1 | tbd | 68 | 43.5 | 9173 | 301.5 | 27212 | 971, 100, scaffold_4327:120126-122167 | plot pteVam1 |
411 | 2011 | punNye1 | GCF_000239375.1 | ALLPATHS-LG v. R37016 | 1574 | 95 | 242736 | 20 | 332782 | 992, 20, JH419321:67178-69181 | plot punNye1 |
412 | 2014 | pygAde1 | GCA_000699105.1 | SOAPdenovo v. 1.6 | 42 | 113 | 7740 | 1160.5 | 93198 | 78, 17, KL224983:2418932-2419104 | plot pygAde1 |
413 | 2013 | pytBiv1 | GCF_000186305.1 | Soap deNovo v. March 2012 | 21222 | 101 | 2315791 | 99 | 2845128 | 649, 10, KE957835:3697-5004 | plot pytBiv1 |
418 | 2005 | rheMac1 | tbd | tbd | 2816 | 39 | 116369 | 50 | 214725 | 205, 50, SCAFFOLD120616:17732-18191 | plot rheMac1 |
419 | 2010 | rheMac3 | GCA_000230795.1 | SOAPdenovo v. 1.0 | 288 | 192.5 | 71777 | 1140.5 | 887215 | 949, 27, chr15:33329332-33331256 | plot rheMac3 |
420 | 2015 | rheMac8 | GCF_000772875.2 | MaSuRCA v. 1.8.3; PBJelly2 v. 14.9.9 | 80 | 99.5 | 20122 | 917 | 437685 | 823, 20, chr7:1436259-1437924 | plot rheMac8 |
421 | 2016 | rhiBie1 | GCF_001698545.1 | Newbler v. 71; Anytag v. 70; GOBOND v. 69; GapCloser v. 1.12 | 4262 | 228 | 1007049 | 1 | 2148972 | 965, 1, NW_016817388v1:689035-690965 | plot rhiBie1 |
422 | 2013 | rhiFer1 | GCA_000465495.1 | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | 2 | 42.5 | 85 | 1 | 2 | 45, 1, KI143993:8550-8640 | plot rhiFer1 |
423 | 2014 | rhiRox1 | GCF_000769185.1 | SOAPdenovo v. 2013.04 | 187 | 158 | 50999 | 529 | 184770 | 584, 11, KN296100v1:378785-379963 | plot rhiRox1 |
424 | 1880 | ricCom1 | GCF_000151685.1 | tbd | 41 | 332 | 13808 | 738 | 38675 | 787, 3, EQ973819:99412-100988 | plot ricCom1 |
425 | 2003 | rn3 | tbd | tbd | 574 | 143 | 146802 | 50 | 425043 | 72, 1, chr4:1247786-1247930 | plot rn3 |
426 | 2004 | rn4 | tbd | tbd | 567 | 141 | 142452 | 50 | 424693 | 72, 1, chr4:1247786-1247930 | plot rn4 |
427 | 2012 | rn5 | tbd | tbd | 64 | 516 | 32231 | 50 | 28921 | 712, 1, chr3:45275318-45276742 | plot rn5 |
428 | 2014 | rn6 | GCF_000001895.5 | Atlas Assembly suite v. 2.0; CLCbio v. 1.0; Velvet v. 1.0; PBjelly v. 2.0 | 719 | 290 | 280406 | 50 | 1258566 | 712, 1, chr3:40184108-40185532 | plot rn6 |
433 | 2011 | saiBol1 | GCA_000235385.1 | AllPaths v. R37830 | 1541 | 77 | 139356 | 100 | 303093 | 1000, 100, JH378136:528784-530883 | plot saiBol1 |
435 | 2011 | sarHar1 | GCF_000189315.1 | Phusion2 v. 1.0 | 17494 | 220 | 2993318 | 158 | 6574378 | 958, 10, chr1_GL834475_random:882665-884590 | plot sarHar1 |
436 | 2013 | sebNig1 | GCA_000475235.1 | tbd | 168 | 55.5 | 11782 | 54.5 | 11235 | 82, 2, KI499294:4621-4786 | plot sebNig1 |
437 | 2013 | sebRub1 | GCA_000475215.1 | SOAPdenovo v. 1.05 | 119 | 55 | 9711 | 51 | 8253 | 142, 1, KI444651:3586-3870 | plot sebRub1 |
438 | 2014 | serCan1 | GCF_000534875.1 | tbd | 213 | 97 | 36640 | 20 | 33876 | 971, 1, HG009242:4536330-4538272 | plot serCan1 |
439 | 2006 | sorAra1 | tbd | tbd | 229 | 330 | 79670 | 100 | 75086 | 895, 100, scaffold_247593:25660-27549 | plot sorAra1 |
440 | 2008 | sorAra2 | GCF_000181275.1 | Allpaths v. R41070 | 3389 | 75 | 359891 | 100 | 822102 | 992, 100, JH798160:15867029-15869112 | plot sorAra2 |
441 | 2008 | speTri1 | tbd | tbd | 99 | 46 | 12167 | 879 | 197520 | 835, 100, scaffold_1259:158788-160557 | plot speTri1 |
442 | 2011 | speTri2 | GCF_000236235.1 | ALLPATHS v. R37591 | 2964 | 95 | 353556 | 100 | 565083 | 1000, 100, JH393486:3045059-3047158 | plot speTri2 |
444 | 2014 | stePar1 | GCF_000690725.1 | ALLPATHS-LG v. August 2013 | 554 | 65 | 47063 | 1 | 120402 | 952, 1, KK580894:321554-323458 | plot stePar1 |
445 | 1880 | strCam0 | tbd | tbd | 20 | 243 | 7267 | 836.5 | 40260 | 184, 13, superscaffold45:7169362-7169742 | plot strCam0 |
446 | 2014 | strCam1 | GCF_000698965.1 | SOAPdenovo v. 1.6 | 19 | 246 | 7125 | 759 | 39346 | 184, 13, KL206666:4120006-4120386 | plot strCam1 |
447 | 2005 | strPur1 | tbd | tbd | 1291 | 153 | 303896 | 50 | 238579 | 89, 1, Scaffold16400:576-754 | plot strPur1 |
448 | 2006 | strPur2 | tbd | tbd | 367 | 55 | 25281 | 50 | 79238 | 35, 1, Scaffold12735:108654-108724 | plot strPur2 |
449 | 2009 | strPur3 | tbd | tbd | 989 | 56 | 64991 | 96 | 187408 | 35, 1, Scaffold740:110486-110556 | plot strPur3 |
450 | 2011 | strPur4 | GCF_000002235.3 | Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement | 1612 | 100 | 326953 | 50 | 206009 | 425, 3, Scaffold112:361603-362455 | plot strPur4 |
452 | 2014 | strRat2 | GCA_001040885.1 | tbd | 2 | 54.5 | 109 | 6 | 12 | 67, 1, chrUn_LN609483v1:243-377 | plot strRat2 |
454 | 2009 | susScr1 | tbd | tbd | 371 | 43 | 34151 | 100 | 66500 | 986, 100, chr2:139016697-139018768 | plot susScr1 |
455 | 2017 | susScr11 | GCF_000003025.6 | Falcon v. OCT-2015 | 2 | 104.5 | 209 | 100 | 200 | 110, 100, chrY:6779476-6779795 | plot susScr11 |
456 | 2009 | susScr2 | tbd | tbd | 371 | 43 | 34151 | 100 | 66500 | 986, 100, chr2:139016697-139018768 | plot susScr2 |
457 | 1880 | taeGut0 | tbd | tbd | 212 | 45 | 20495 | 442 | 116920 | 624, 10, Contig233:50949-52206 | plot taeGut0 |
458 | 2008 | taeGut1 | tbd | tbd | 223 | 45 | 22373 | 100 | 22300 | 689, 100, chr21_random:54357-55834 | plot taeGut1 |
459 | 2013 | taeGut2 | GCF_000151805.1 | PCAP v. 2008 | 219 | 44 | 21273 | 100 | 21900 | 624, 100, chr27:56676-58023 | plot taeGut2 |
461 | 2013 | takFla1 | GCA_000400755.1 | HAPs v. 0.2.2 | 365 | 241 | 91817 | 788 | 407496 | 503, 1, KE121297:329-1335 | plot takFla1 |
462 | 2013 | tarIhg38 | tbd | tbd | 12 | 78 | 974 | 440 | 56689 | 125, 20, chrUn_KI270442v1:175618-175887 | plot tarIhg38 |
463 | 2008 | tarSyr1 | tbd | tbd | 331 | 70 | 45530 | 191 | 102767 | 892, 100, scaffold_111889:3660-5543 | plot tarSyr1 |
464 | 2013 | tarSyr2 | GCF_000164805.1 | Celera v. DEC-2012 | 189 | 56 | 17645 | 20 | 9572 | 1000, 20, KE939253v1:939796-941815 | plot tarSyr2 |
465 | 2014 | tauEry1 | GCF_000709365.1 | SOAPdenovo v. 1.6 | 1 | 50 | 50 | 394 | 394 | 50, 394, KL466072:20829-21322 | plot tauEry1 |
466 | 2004 | tetNig1 | tbd | tbd | 64 | 272.5 | 21868 | 1000 | 53904 | 336, 59, chr5:807217-807947 | plot tetNig1 |
467 | 2007 | tetNig2 | tbd | tbd | 70 | 298 | 25569 | 500 | 32404 | 336, 59, chr5:799217-799947 | plot tetNig2 |
468 | 2015 | thaSir1 | GCF_001077635.1 | ALLPATHS-LG v. May 2015 | 3234 | 95 | 407625 | 666 | 2420576 | 981, 1, NW_013657934v1:351094-353056 | plot thaSir1 |
469 | 2014 | tinGut1 | GCF_000705375.1 | SOAPdenovo v. 1.6 | 18 | 96 | 3855 | 1086 | 21982 | 519, 68, KL400865:236113-237218 | plot tinGut1 |
470 | 2014 | tinGut2 | GCF_000705375.1 | SOAPdenovo v. 1.6 | 18 | 96 | 3855 | 1086 | 21982 | 519, 68, KL895544:236113-237218 | plot tinGut2 |
471 | 2005 | triCas1 | tbd | tbd | 75 | 100 | 8201 | 50 | 6900 | 214, 50, Contig5855_Contig1469:226794-227271 | plot triCas1 |
472 | 2005 | triCas2 | tbd | tbd | 63 | 62 | 5442 | 50 | 313244 | 412, 50, chrUn_46:283716-284589 | plot triCas2 |
473 | 2011 | triMan1 | GCF_000243295.1 | AllPaths v. R38542 | 5748 | 75 | 527972 | 100 | 726640 | 1000, 100, JH594622:8537918-8540017 | plot triMan1 |
474 | 2011 | triSpi1 | GCF_000181795.1 | PCAP v. January 12, 2007 | 3 | 55 | 806 | 10 | 230 | 705, 10, GL622790v1:172202-173621 | plot triSpi1 |
475 | 2014 | triSui1 | GCA_000701005.1 | SOAPdenovo v. 2 | 37 | 138 | 7959 | 1449 | 82883 | 120, 68, KL363219v1:83933-84240 | plot triSui1 |
477 | 2013 | tupChi1 | GCF_000334495.1 | SOAPdenovo v. 1.05 | 914 | 220.5 | 290632 | 987.5 | 1823897 | 861, 16, KB320907:3306581-3308318 | plot tupChi1 |
478 | 2008 | turTru1 | tbd | tbd | 112 | 41.5 | 15556 | 388 | 52461 | 993, 100, scaffold_108458:6669-8754 | plot turTru1 |
479 | 2011 | turTru2 | GCF_000151865.2 | Atlas, Atlas-Link, Atlas-GapFill v. June 2011 | 5612 | 70 | 466776 | 188.5 | 1979352 | 44, 1, JH496197:2095-2183 | plot turTru2 |
480 | 2014 | tytAlb1 | GCF_000687205.1 | SOAPdenovo v. 1.6 | 2 | 170 | 340 | 326 | 652 | 289, 220, KK379918:2163-2960 | plot tytAlb1 |
481 | 2014 | ursMar1 | GCF_000687225.1 | SOAPdenovo v. 1.05 | 205 | 41 | 12130 | 3384 | 708704 | 711, 49, KK498595:3401141-3402611 | plot ursMar1 |
482 | 2007 | venter1 | tbd | tbd | 64 | 411.5 | 26995 | 100 | 64592 | 862, 20, chr2:102870978-102872721 | plot venter1 |
483 | 2008 | vicPac1 | tbd | tbd | 221 | 251 | 71912 | 276 | 310711 | 993, 100, scaffold_812:411693-413778 | plot vicPac1 |
484 | 2013 | vicPac2 | GCF_000164845.1 | Newbler v. May-2012 | 1245 | 69 | 115488 | 369 | 430947 | 685, 20, KB632527:971889-973278 | plot vicPac2 |
485 | 1880 | vicVic1 | tbd | tbd | 218 | 252.5 | 71401 | 263 | 309237 | 993, 100, scaffold_812:411693-413778 | plot vicVic1 |
486 | 2016 | xenLae2 | GCF_001663975.1 | Meraculous v. May-2013 | 2660 | 43 | 112843 | 265 | 1906995 | 50, 10, chr6S:105116072-105116181 | plot xenLae2 |
487 | 2004 | xenTro1 | tbd | tbd | 140 | 177.5 | 37717 | 889.5 | 437093 | 94, 1, scaffold_26179:153-341 | plot xenTro1 |
488 | 2005 | xenTro2 | tbd | tbd | 116 | 229.5 | 33928 | 806.5 | 320973 | 83, 1, scaffold_13788:6263-6429 | plot xenTro2 |
489 | 2009 | xenTro3 | tbd | tbd | 116 | 229.5 | 33928 | 806.5 | 320973 | 83, 1, GL185958:6263-6429 | plot xenTro3 |
490 | 2012 | xenTro7 | GCF_000004195.2 | ARACHNE v. 20071016_modified | 98 | 82.5 | 16149 | 201 | 69741 | 775, 100, KB022861:7377-9026 | plot xenTro7 |
491 | 2016 | xenTro9 | GCF_000004195.3 | Meraculous v. May-2013 | 172 | 105.5 | 27368 | 100 | 99243 | 775, 100, chrUn_NW_016684502v1:7377-9026 | plot xenTro9 |
492 | 2012 | xipMac1 | GCF_000241075.1 | PCAP v. 3/30/09; Newbler v. MapAsmResearch-02/17/2010 | 548 | 50 | 32896 | 131 | 334271 | 30, 1, JH556915:15756-15816 | plot xipMac1 |
494 | 2013 | zonAlb1 | GCF_000385455.1 | Allpaths-LG v. Feb-2013 | 538 | 79 | 50834 | 1 | 134738 | 990, 1, KB913055:7474487-7476467 | plot zonAlb1 |
assemblies with zero duplicate gap sequences
count | year | dbName | ncbiAsmId | number of gaps | assembly method |
---|---|---|---|---|---|
001 | 2012 | aciBauTYTH_1 | GCF_000302575.1 | 4 | tbd |
002 | 2006 | afrOth13 | tbd | 220 | tbd |
003 | 2014 | apaVit1 | GCF_000703405.1 | 50921 | SOAPdenovo v. 1.6 |
004 | 2018 | astCal1 | tbd | 395 | tbd |
005 | 2006 | borEut13 | tbd | 0 | tbd |
006 | 2014 | bunEbo1 | GCF_000889155.1 | 0 | tbd |
007 | 2010 | caeJap3 | tbd | 0 | tbd |
008 | 2003 | canFamPoodle1 | GCA_000181415.1 | 0 | tbd |
009 | 2005 | canHg12 | tbd | 0 | tbd |
010 | 2010 | ce10 | tbd | 0 | tbd |
011 | 2013 | ce11 | GCF_000002985.6 | 0 | tbd |
012 | 2004 | ce2 | tbd | 5 | tbd |
013 | 2005 | ce3 | tbd | 0 | tbd |
014 | 2007 | ce4 | tbd | 0 | tbd |
015 | 2007 | ce5 | tbd | 0 | tbd |
016 | 2008 | ce6 | tbd | 0 | tbd |
017 | 2009 | ce7 | tbd | 0 | tbd |
018 | 2009 | ce8 | tbd | 0 | tbd |
019 | 2010 | ce9 | tbd | 0 | tbd |
020 | 2004 | droMoj1 | tbd | 0 | tbd |
021 | 2014 | eboVir1 | tbd | 2 | tbd |
022 | 2014 | eboVir3 | tbd | 0 | tbd |
023 | 2006 | euaGli13 | tbd | 19510 | tbd |
024 | 2006 | eutHer13 | tbd | 304 | tbd |
025 | 2017 | felCat9 | GCF_000181335.3 | 418 | WTDBG v. 1.2, Chromonomer v. 1.0.7 |
026 | 2018 | galGal6 | GCF_000002315.5 | 943 | FALCON-integrate v. 1.7.5 |
027 | 1880 | gasAsc0 | GCA_000180675.1 | 0 | tbd |
028 | 2006 | gliRes13 | tbd | 39623 | tbd |
029 | 2016 | gorGor5 | tbd | 0 | tbd |
030 | 1993 | hbv1 | GCF_000861825.2 | 0 | tbd |
031 | 2006 | homIni14 | tbd | 0 | tbd |
032 | 1880 | homNea0 | tbd | 872 | tbd |
033 | 2002 | hpv1 | GCF_000862685.1 | 0 | tbd |
034 | 2006 | lauRas13 | tbd | 31794 | tbd |
035 | 2014 | marVir1 | tbd | 0 | tbd |
036 | 2008 | melHap1 | GCA_000172435.1 | 0 | tbd |
037 | 2008 | melInc1 | GCA_000180415.1 | 0 | tbd |
038 | 2016 | oreNil3 | GCF_001858045.1 | 424 | Canu v. 1.0; Chromonomer v. 1.05 |
039 | 2006 | otoGar1 | tbd | 0 | tbd |
040 | 2018 | ponAbe3 | GCF_002880775.1 | 553 | Falcon v. (git hash: 91e700c4) Nov 2015; BioNano Access Hybrid Scaffolds |
041 | 2008 | priPac2 | GCA_000180635.1 | 59 | tbd |
042 | 2012 | repBase0 | tbd | 2137 | tbd |
043 | 2012 | repBase1 | tbd | 3623 | tbd |
044 | 1880 | repBase2 | tbd | 3237 | tbd |
045 | 2014 | resEbo1 | GCF_000854085.1 | 0 | tbd |
046 | 2016 | rouAeg1 | GCF_001466805.2 | 638 | SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0 |
047 | 2003 | sacCer1 | tbd | 0 | tbd |
048 | 2008 | sacCer2 | tbd | 0 | tbd |
049 | 2011 | sacCer3 | GCF_000146045.2 | 0 | tbd |
050 | 1880 | salMan0 | tbd | 0 | tbd |
051 | 2006 | staAur1 | GCF_000013425.1 | 1 | tbd |
052 | 2011 | strRat1 | tbd | 3207 | tbd |
053 | 2014 | sudEbo1 | GCF_000855585.1 | 0 | tbd |
054 | 2014 | taiEbo1 | GCF_000888475.1 | 0 | tbd |
055 | 2006 | tupBel1 | tbd | 0 | tbd |
056 | 2014 | zaiEbo1 | GCF_000848505.1 | 0 | tbd |