Hg18 44way blastz parameters: Difference between revisions

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==See Also:==
==see also==


<UL>
<UL>
<LI>[[Genome size statistics]]</LI>
<LI>Human 44-way [[Genome size statistics|Hg18 Genome size statistics]]</LI>
<LI>[[Hg18 44way alignment]]</LI>
<LI>Human 44-way [[Hg18 44way alignment|Hg18 conservation alignment]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
</UL>
</UL>


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</TR>
</TR>
<TR><TH>Gorilla&nbsp;gorGor1</TH>
<TR><TH>Gorilla&nbsp;gorGor1</TH>
    <TD COLSPAN=13 ALIGN=center>unknown</TD>
  <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>0</TD><TD>400</TD><TD>1</TD>
  <TD>2008-11-05</TD><TD ALIGN=RIGHT>61.731%</TD>
</TR>
</TR>
<TR><TH>Orangutan&nbsp;ponAbe2</TH>
<TR><TH>Orangutan&nbsp;ponAbe2</TH>
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</TR>
</TR>
</TABLE>
</TABLE>
[[Category:Comparative Genomics]]

Latest revision as of 22:46, 18 May 2011

see also

do not edit, automatically generated table

query abridged
repeats(no)		 M(40M)K(3000) L(3000)QY(9400) program
run		E(30)H(0) O(400)T(1) chain table
date		 % of hg18
matched
(chainLink table)
Chimp panTro2 no40M45003000human_chimp.v2.q 15000blastz.v715006002 2006-07-1594.888%
Gorilla gorGor1 no5030003000default 9400lastz3004001 2008-11-0561.731%
Orangutan ponAbe2 no5030003000default 9400blastz3004001 2007-10-0392.892%
Rhesus rheMac2 no40M30003000default 9400blastz.v73004001 2006-03-1785.552%
Marmoset calJac1 no5030003000default 9400blastz3004001 2007-11-1378.351%
Tarsier tarSyr1 no5030003000default 9400lastz3004001 2008-10-2747.999%
Bushbaby otoGar1 no40M30003000default 9400blastz.v73004001 2007-02-2744.638%
Mouse lemur micMur1 no5030003000default 9400lastz3004002 2008-08-0446.445%
TreeShrew tupBel1 no40M30003000default 9400blastz.v73004001 2006-12-2037.348%
Mouse mm9 yes40M30003000default 9400blastz3004001 2007-08-1435.201%
Rat rn4 yes40M30003000default 9400blastz3004001 2006-02-1732.893%
Kangaroo rat dipOrd1 no5030003000default 9400lastz3004001 2008-10-2227.282%
Guinea Pig cavPor3 no5030003000default 9400blastz3004001 2008-04-1143.971%
Squirrel speTri1 no5030003000default 9400lastz3004001 2008-08-0535.828%
Rabbit oryCun1 no40M30003000default 9400blastz.v73004001 2007-04-1734.015%
Pika ochPri2 no5030003000default 9400lastz3004001 2008-07-3027.974%
Shrew sorAra1 no5030003000default 9400blastz3004001 2007-03-1020.056%
hedgehog eriEur1 no5030003000default 9400blastz3004001 2007-03-1119.622%
Cat felCat3 no5030003000default 9400blastz3004001 2006-11-1035.888%
Dog canFam2 yes40M30003000default 9400blastz.v73004001 2005-12-2952.915%
Horse equCab2 no5030003000default 9400blastz3004001 2008-04-1157.162%
Megabat pteVam1 no5030003000default 9400lastz3004001 2008-10-2245.502%
Microbat myoLuc1 no5030003000default 9400blastz3004002 2008-08-0233.044%
Dolphin turTru1 no5030003000default 9400lastz3004001 2008-10-2248.537%
Cow bosTau4 no5030003000default 9400blastz3004001 2008-03-1146.689%
Alpaca vicPac1 no5030003000default 9400lastz3004001 2008-10-2839.531%
Armadillo dasNov2 no5030003000default 9400lastz3004001 2008-10-2733.663%
Sloth choHof1 no5030003000default 9400lastz3004001 2008-10-2434.463%
Tenrec echTel1 no40M30003000default 9400blastz.v73004001 2007-04-1723.645%
Elephant loxAfr2 no5030003000default 9400lastz3004001 2008-10-2735.204%
Rock hyrax proCap1 no5030003000default 9400lastz3004001 2008-10-2430.935%
Opossum monDom4 no50220010000HoxD55.q 3400blastz.v73020004001 2006-02-1312.385%
Platypus ornAna1 no5022006000HoxD55.q 3400blastz3020004001 2007-04-047.870%
Chicken galGal3 yes40M220010000HoxD55.q 3400blastz.v73020004001 2006-05-233.589%
Zebra finch taeGut1 no50220010000HoxD55.q 3400blastz3020004001 2008-09-093.503%
Lizard anoCar1 no40M22006000HoxD55.q 3400blastz3020004001 2007-02-184.774%
X. tropicalis xenTro2 no40M22008000HoxD55.q 3400blastz.v73020004001 2006-04-202.623%
Zebrafish danRer5 no5022006000HoxD55.q 3400blastz3004001 2007-10-172.565%
Tetraodon tetNig1 no40M22006000HoxD55.q 3400blastz.v73020004001 2006-01-072.001%
Fugu fr2 no5022006000HoxD55.q 3400blastz3020004001 2007-01-241.766%
Stickleback gasAcu1 no5022006000HoxD55.q 3400blastz3020004001 2007-02-081.923%
Medaka oryLat2 no5022006000HoxD55.q 3400lastz3004001 2008-08-191.829%
Lamprey petMar1 no5022006000HoxD55.q 3400blastz3004001 2008-01-291.251%
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