Mm10 Genome size statistics: Difference between revisions

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(updated data)
(updated data)
Line 458: Line 458:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Chicken]</TD><TH ALIGN=CENTER>12X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Chicken]</TD><TH ALIGN=CENTER>12X</TH>
<TH ALIGN=CENTER>90216835</TH>
<TH ALIGN=CENTER>90216835</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.676%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/367 48]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/367 48]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH>
<TH ALIGN=RIGHT>70</TH>
<TH ALIGN=RIGHT>70</TH>
Line 467: Line 467:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Zebra finch]</TD><TH ALIGN=CENTER>6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Zebra finch]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>73657157</TH>
<TH ALIGN=CENTER>73657157</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.599%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH>
<TH ALIGN=RIGHT>6,457</TH>
<TH ALIGN=RIGHT>6,457</TH>
Line 476: Line 476:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Lizard]</TD><TH ALIGN=CENTER>7.1X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Lizard]</TD><TH ALIGN=CENTER>7.1X</TH>
<TH ALIGN=CENTER>150641573</TH>
<TH ALIGN=CENTER>150641573</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.331%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 50]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 50]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH>
<TH ALIGN=RIGHT>5,891</TH>
<TH ALIGN=RIGHT>5,891</TH>
Line 485: Line 485:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH>
<TH ALIGN=CENTER>74864452</TH>
<TH ALIGN=CENTER>74864452</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.511%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH>
<TH ALIGN=RIGHT>19,550</TH>
<TH ALIGN=RIGHT>19,550</TH>
Line 494: Line 494:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 X. tropicalis]</TD><TH ALIGN=CENTER>7.65X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 X. tropicalis]</TD><TH ALIGN=CENTER>7.65X</TH>
<TH ALIGN=CENTER>1567461</TH>
<TH ALIGN=CENTER>1567461</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>3.125%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/56111 52]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/56111 52]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH>
<TH ALIGN=RIGHT>22,819</TH>
<TH ALIGN=RIGHT>22,819</TH>
Line 503: Line 503:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Coelacanth]</TD><TH ALIGN=CENTER>77.5X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Coelacanth]</TD><TH ALIGN=CENTER>77.5X</TH>
<TH ALIGN=CENTER>924513</TH>
<TH ALIGN=CENTER>924513</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.715%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2661 53]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2661 53]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH>
<TH ALIGN=RIGHT>427,428</TH>
<TH ALIGN=RIGHT>427,428</TH>
Line 512: Line 512:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Atlantic cod]</TD><TH ALIGN=CENTER>40X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Atlantic cod]</TD><TH ALIGN=CENTER>40X</TH>
<TH ALIGN=CENTER>393166</TH>
<TH ALIGN=CENTER>393166</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.726%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 54]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 54]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH>
<TH ALIGN=RIGHT>5,901</TH>
<TH ALIGN=RIGHT>5,901</TH>
Line 521: Line 521:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Nile tilapia]</TD><TH ALIGN=CENTER>269X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Nile tilapia]</TD><TH ALIGN=CENTER>269X</TH>
<TH ALIGN=CENTER>2802423</TH>
<TH ALIGN=CENTER>2802423</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.957%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 55]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 55]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH>
<TH ALIGN=RIGHT>23</TH>
<TH ALIGN=RIGHT>23</TH>
Line 530: Line 530:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Stickleback]</TD><TH ALIGN=CENTER>6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Stickleback]</TD><TH ALIGN=CENTER>6X</TH>
<TH ALIGN=CENTER>20083130</TH>
<TH ALIGN=CENTER>20083130</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.016%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.fugu-sg.org/ 56]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.fugu-sg.org/ 56]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH>
<TH ALIGN=RIGHT>6,835</TH>
<TH ALIGN=RIGHT>6,835</TH>
Line 539: Line 539:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Fugu]</TD><TH ALIGN=CENTER>8.5X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Fugu]</TD><TH ALIGN=CENTER>8.5X</TH>
<TH ALIGN=CENTER>11516971</TH>
<TH ALIGN=CENTER>11516971</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.789%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH>
<TH ALIGN=RIGHT>27</TH>
<TH ALIGN=RIGHT>27</TH>
Line 548: Line 548:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon]</TD><TH ALIGN=CENTER>7.9X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon]</TD><TH ALIGN=CENTER>7.9X</TH>
<TH ALIGN=CENTER>13390619</TH>
<TH ALIGN=CENTER>13390619</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.735%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 58]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH>
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 58]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH>
<TH ALIGN=RIGHT>1,133</TH>
<TH ALIGN=RIGHT>1,133</TH>
Line 557: Line 557:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Zebrafish]</TD><TH ALIGN=CENTER>30X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Zebrafish]</TD><TH ALIGN=CENTER>30X</TH>
<TH ALIGN=CENTER>54093808</TH>
<TH ALIGN=CENTER>54093808</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>2.602%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[http://dolphin.lab.nig.ac.jp/medaka/index.php 59]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH>
<TR><TH ALIGN=RIGHT>[http://dolphin.lab.nig.ac.jp/medaka/index.php 59]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH>
<TH ALIGN=RIGHT>7,189</TH>
<TH ALIGN=RIGHT>7,189</TH>
Line 566: Line 566:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Medaka]</TD><TH ALIGN=CENTER>10.6X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Medaka]</TD><TH ALIGN=CENTER>10.6X</TH>
<TH ALIGN=CENTER>29908082</TH>
<TH ALIGN=CENTER>29908082</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.936%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>[ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/ 60]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]</TH>
<TR><TH ALIGN=RIGHT>[ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/ 60]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]</TH>
<TH ALIGN=RIGHT>108,241</TH>
<TH ALIGN=RIGHT>108,241</TH>
Line 575: Line 575:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/287 Lamprey]</TD><TH ALIGN=CENTER>5.9X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/genome/287 Lamprey]</TD><TH ALIGN=CENTER>5.9X</TH>
<TH ALIGN=CENTER>14239</TH>
<TH ALIGN=CENTER>14239</TH>
   <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>1.101%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>5000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>loose</TD></TR>
</TABLE>
</TABLE>

Revision as of 23:09, 4 April 2012

see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-test browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order
count/
ftp src		 ucsc
db name/
genome-test		 chrom
count		 total
size		 non-N
bases		 N base
count		 % masked common name/
src info		 coverage N50
chrom.sizes		 alignment type % of mm10
matched
(chainLink table)		 chain
minScore		 chain
linearGap
01mm10 66 2,730,871,7742,652,783,500 78,088,274% 45.18 Mouse20X 130694993 N/AN/A N/A N/A
02rn4 45 2,834,127,2932,566,294,765 267,832,528% 44.29 Rat20X 143002779 SyntenicNet54.645% 5000 medium
03speTri2 12,483 2,478,393,7702,311,060,300 167,333,470% 36.27 Squirrel495X 8192786 SyntenicNet34.217% 3000 medium
04micMur1 185,042 2,902,270,7361,852,394,361 1,049,876,375% 37.31 Mouse lemur2X 140884 RecipBest26.636% 3000 medium
05dipOrd1 210,053 2,158,502,0981,844,961,421 313,540,677% 28.28 Kangaroo rat2X 36427 RecipBest19.460% 3000 medium
06saiBol1 2,685 2,608,572,0642,477,131,095 131,440,969% 46.69 Squirrel monkey80X 18744880 SyntenicNet32.339% 3000 medium
07hetGla1 39,267 2,643,978,2232,430,064,805 213,913,418% 32.64 Naked mole-rat90X 1603177 SyntenicNet32.163% 3000 medium
08hg19 93 3,137,161,2642,897,310,462 239,850,802% 50.63 Human20X 146364022 SyntenicNet38.226% 3000 medium
09gorGor3 46,823 3,029,553,6462,822,760,080 206,793,566% 48.80 Gorilla2.1X 145327772 SyntenicNet33.987% 3000 medium
10panTro4 24,129 3,309,577,9222,902,338,967 407,238,955% 51.29 Chimp6X 143986469 SyntenicNet34.674% 3000 medium
11nomLeu1 17,968 2,936,035,3332,756,591,777 179,443,556% 50.82 Gibbon5.6X 22692035 SyntenicNet34.132% 3000 medium
12ponAbe2 55 3,446,771,3963,093,543,172 353,228,224% 50.89 Orangutan6X 135191526 SyntenicNet34.496% 3000 medium
13tarSyr1 656,709 3,179,905,1322,768,536,343 411,368,789% 41.75 Tarsier2X 12214 RecipBest24.560% 3000 medium
14rheMac3 34,103 2,969,988,1802,639,145,830 330,842,350% 48.54 Chinese rhesus50X 150158102 SyntenicNet33.931% 3000 medium
15papHam1 387,374 2,867,564,6542,741,849,051 125,715,603% 48.70 Baboon5.3X 88525 RecipBest33.577% 3000 medium
16otoGar3 7,793 2,519,724,5502,359,530,453 160,194,097% 39.51 Bushbaby137X 13852661 SyntenicNet29.795% 3000 medium
17calJac3 14,205 2,914,958,5442,752,505,800 162,452,744% 47.71 Marmoset6X 132174527 SyntenicNet32.450% 3000 medium
18equCab2 34 2,484,532,0622,428,790,173 55,741,889% 40.97 Horse6.8X 91571448 SyntenicNet34.415% 3000 medium
19cavPor3 3,144 2,723,219,6412,663,369,733 59,849,908% 27.53 Guinea pig6.76X 27942054 SyntenicNet28.447% 3000 medium
20vicPac1 298,413 2,962,253,6081,922,910,435 1,039,343,173% 32.24 Alpaca2X 230521 RecipBest22.636% 3000 medium
21turTru1 116,467 2,519,048,4862,298,444,090 220,604,396% 43.86 Dolphin2X 166056 RecipBest28.761% 3000 medium
22tupBel1 150,851 3,660,774,9572,137,225,476 1,523,549,481% 20.43 Tree shrew2X 127888 RecipBest19.766% 3000 medium
23susScr2 20 2,262,501,5712,231,298,548 31,203,023% 42.41 Pig24X 134541103 SyntenicNet23.248% 3000 medium
24oryCun2 3,242 2,737,490,5012,604,023,284 133,467,217% 43.74 Rabbit6.51X 111795807 SyntenicNet25.248% 3000 medium
25choHof1 481,259 2,458,927,6202,060,419,685 398,507,935% 35.67 Sloth2X 9667 RecipBest18.019% 3000 medium
26triMan1 6,323 3,103,808,4062,769,099,677 334,708,729% 36.24 Manatee150X 14442683 SyntenicNet26.546% 3000 medium
27pteVam1 96,944 1,996,076,4101,839,436,660 156,639,750% 31.75 Megabat2X 124060 RecipBest27.345% 3000 medium
28felCat4 104,054 3,160,303,9481,990,635,005 1,169,668,943% 40.58 Cat2.8X 164876586 RecipBest24.033% 3000 medium
29ailMel1 81,467 2,299,509,0152,245,312,831 54,196,184% 38.96 Panda73X 1281781 SyntenicNet30.979% 3000 medium
30canFam3 3,268 2,410,976,8752,392,715,236 18,261,639% 43.01 Dog7.6X 63241923 SyntenicNet29.144% 3000 medium
31loxAfr3 2,353 3,196,760,8333,118,565,340 78,195,493% 47.63 Elephant7X 46401353 SyntenicNet25.823% 3000 medium
32dasNov2 292,141 4,813,823,5622,371,493,872 2,442,329,690% 37.23 Armadillo2X 55360 RecipBest17.004% 3000 medium
33myoLuc2 11,654 2,034,575,3001,966,419,868 68,155,432% 33.71 Microbat2.18X 4293315 SyntenicNet24.363% 3000 medium
34bosTau7 11,692 2,981,119,5792,804,673,174 176,446,405% 49.56 Cow7.1X 85119472 SyntenicNet26.255% 3000 medium
35oviAri1 1,218 2,860,512,9831,201,271,277 1,659,241,706% 20.52 Sheep3X 100831284 RecipBest15.341% 3000 medium
36ochPri2 187,558 3,445,784,3541,923,624,051 1,522,160,303% 11.44 Pika2X 88760 RecipBest14.542% 3000 medium
37proCap1 295,006 2,985,258,9992,407,847,681 577,411,318% 28.11 Rock hyrax2X 24297 RecipBest15.147% 3000 medium
38eriEur1 379,802 3,367,787,3582,133,134,836 1,234,652,522% 50.89 Hedgehog2X 33565 RecipBest9.856% 3000 medium
39echTel1 325,491 3,823,724,7282,111,581,369 1,712,143,359% 13.84 Tenrec2X 48377 RecipBest10.947% 3000 medium
40sorAra1 262,057 2,936,119,0081,832,864,697 1,103,254,311% 39.07 Shrew2X 47941 RecipBest9.382% 3000 medium
41macEug2 277,711 3,075,184,0242,536,076,954 539,107,070% 47.39 Wallaby2X 36602 RecipBest4.353% 3000 medium
42monDom5 11 3,605,631,7283,501,660,299 103,971,429% 55.95 Opossum6.8X 527952102 Net9.584% 5000 loose
43sarHar1 35,974 3,174,693,0102,931,539,702 243,153,308% 39.66 Tasmanian devil85X 1847106 Net8.479% 5000 loose
44melUnd1 25,212 1,117,373,6191,086,614,815 30,758,804% 19.62 Budgerigar7X 10614383 Net3.589% 5000 loose
45ornAna1 201,523 1,996,811,2121,842,235,522 154,575,690% 47.89 Platypus6X 991605 Net5.348% 5000 loose
46chrPic1 80,984 2,589,745,7042,158,289,746 431,455,958% 31.20 Painted turtle15X 5212367 Net4.731% 5000 loose
47galGal4 15,932 1,046,932,0991,032,854,810 14,077,289% 20.41 Chicken12X 90216835 Net3.676% 5000 loose
48taeGut1 70 1,233,186,3411,222,864,691 10,321,650% 20.42 Zebra finch6X 73657157 Net3.599% 5000 loose
49anoCar2 6,457 1,799,143,5871,701,353,767 97,789,820% 41.98 Lizard7.1X 150641573 Net3.331% 5000 loose
50melGal1 5,891 1,061,817,101935,922,386 125,894,715% 6.60 Turkey5X 74864452 Net3.511% 5000 loose
51xenTro3 19,550 1,511,735,3261,358,334,882 153,400,444% 24.55 X. tropicalis7.65X 1567461 Net3.125% 5000 loose
52latCha1 22,819 2,860,591,9212,183,592,768 676,999,153% 45.68 Coelacanth77.5X 924513 Net2.715% 5000 loose
53gadMor1 427,428 824,327,835608,038,555 216,289,280% 31.25 Atlantic cod40X 393166 Net1.726% 5000 loose
54oreNil1 5,901 927,742,539816,084,674 111,657,865% 25.51 Nile tilapia269X 2802423 Net1.957% 5000 loose
55gasAcu1 23 463,354,448446,627,861 16,726,587% 2.58 Stickleback6X 20083130 Net2.016% 5000 loose
56fr3 6,835 391,484,715350,961,831 40,522,884% 19.01 Fugu8.5X 11516971 Net1.789% 5000 loose
57tetNig2 27 358,618,246302,314,788 56,303,458% 20.27 Tetraodon7.9X 13390619 Net1.735% 5000 loose
58danRer7 1,133 1,412,464,8431,409,770,109 2,694,734% 52.06 Zebrafish30X 54093808 Net2.602% 5000 loose
59oryLat2 7,189 869,000,216700,386,597 168,613,619% 33.09 Medaka10.6X 29908082 Net1.936% 5000 loose
60petMar1 108,241 1,027,258,967831,696,438 195,562,529% 40.67 Lamprey5.9X 14239 Net1.101% 5000 loose
Retrieved from "https://genomewiki.ucsc.edu/index.php?title=Mm10_Genome_size_statistics&oldid=19259"