Mm10 conservation alignment: Difference between revisions

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(updated data)
(better order)
Line 46: Line 46:
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.217%</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.217%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Microcebus<BR>murinus]</TD><TD>Mouse&nbsp;lemur</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRO01 Dipodomys<BR>ordii]</TD><TD>Kangaroo&nbsp;rat</TD>
  <TD>Jun.&nbsp;2003&nbsp;(Broad/micMur1)</TD>
  <TD>Broad Institute micMur1 (NCBI project 19967, ABDC00000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-13</TD><TD ALIGN=RIGHT>26.636%</TD>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRO01 Dipodomys<BR>ordii]</TD><TD>Kangaroo&nbsp;rat</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/dipOrd1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/dipOrd1)</TD>
   <TD>Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000)</TD>
   <TD>Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000)</TD>
Line 60: Line 53:
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>19.460%</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>19.460%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/68323 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFSB00 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole-rat</TD>
  <TD>Oct.&nbsp;2011&nbsp;(SaiBol1.0/saiBol1)</TD>
  <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
  <TD ALIGN=RIGHT>2012-01-07</TD>
  <TD ALIGN=RIGHT>2012-01-09</TD>
  <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.339%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/68323 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFSB00 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole-rat</TD>
   <TD>Jul.&nbsp;2011&nbsp;(HetGla_1.0/hetGla1)</TD>
   <TD>Jul.&nbsp;2011&nbsp;(HetGla_1.0/hetGla1)</TD>
   <TD>HetGla_1.0 (NCBI project 68323, accession GCA_000230455.1)</TD>
   <TD>HetGla_1.0 (NCBI project 68323, accession GCA_000230455.1)</TD>
Line 74: Line 60:
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>32.163%</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>32.163%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
  <TD>Feb.&nbsp;2008&nbsp;(Broad/cavPor3)</TD>
  <TD>Broad Institute cavPor3</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>2012-03-17</TD><TD ALIGN=RIGHT>28.447%</TD>
</TR><TR>
  <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD>
  <TD>Apr.&nbsp;2009&nbsp;(Broad/oryCun2)</TD>
  <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-17</TD><TD ALIGN=RIGHT>25.248%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/771 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Ochotona<BR>princeps]</TD><TD>Pika</TD>
  <TD>Jul.&nbsp;2008&nbsp;(Broad/ochPri2)</TD>
  <TD>Broad Institute ochPri2</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-24</TD><TD ALIGN=RIGHT>14.542%</TD>
</TR><TR>
  <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tupaia<BR>belangeri]</TD><TD>Tree&nbsp;shrew</TD>
  <TD>Dec.&nbsp;2006&nbsp;(Broad/tupBel1)</TD>
  <TD>Broad Institute tupBel1 (NCBI project 13971, AAPY01000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-17</TD><TD ALIGN=RIGHT>19.766%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD>
   <TD>Feb.&nbsp;2009&nbsp;(GRCh37/hg19)</TD>
   <TD>Feb.&nbsp;2009&nbsp;(GRCh37/hg19)</TD>
   <TD>GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)</TD>
   <TD>GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)</TD>
Line 81: Line 95:
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>38.226%</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>38.226%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla<BR>gorilla<BR>gorilla]</TD><TD>Gorilla</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla<BR>gorilla<BR>gorilla]</TD><TD>Gorilla</TD>
   <TD>May&nbsp;2011&nbsp;(gorGor3.1/gorGor3)</TD>
   <TD>May&nbsp;2011&nbsp;(gorGor3.1/gorGor3)</TD>
   <TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD>
   <TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD>
Line 88: Line 102:
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>33.987%</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>33.987%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD>
   <TD>Feb.&nbsp;2011&nbsp;(Pan_troglodytes-2.1.4/panTro4)</TD>
   <TD>Feb.&nbsp;2011&nbsp;(Pan_troglodytes-2.1.4/panTro4)</TD>
   <TD>CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)</TD>
   <TD>CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)</TD>
Line 95: Line 109:
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>34.674%</TD>
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>34.674%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu1.0/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV00 Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu1.0/ 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV00 Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
   <TD>Jan.&nbsp;2010&nbsp;(GGSC&nbsp;Nleu1.0/nomLeu1)</TD>
   <TD>Jan.&nbsp;2010&nbsp;(GGSC&nbsp;Nleu1.0/nomLeu1)</TD>
   <TD>GGSC (NCBI project 13975, accession GCA_000146795.1)</TD>
   <TD>GGSC (NCBI project 13975, accession GCA_000146795.1)</TD>
Line 102: Line 116:
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>34.132%</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>34.132%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
   <TD>July&nbsp;2007&nbsp;(WUGSC&nbsp;2.0.2/ponAbe2)</TD>
   <TD>July&nbsp;2007&nbsp;(WUGSC&nbsp;2.0.2/ponAbe2)</TD>
   <TD>WUSTL 3.0</TD>
   <TD>WUSTL 3.0</TD>
Line 109: Line 123:
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>34.496%</TD>
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>34.496%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT00 Tarsius<BR>syrichta]</TD><TD>Tarsier</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT00 Tarsius<BR>syrichta]</TD><TD>Tarsier</TD>
   <TD>Aug.&nbsp;2008&nbsp;(Broad/tarSyr1)</TD>
   <TD>Aug.&nbsp;2008&nbsp;(Broad/tarSyr1)</TD>
   <TD>Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000)</TD>
   <TD>Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000)</TD>
Line 116: Line 130:
   <TD>2012-03-12</TD><TD ALIGN=RIGHT>24.560%</TD>
   <TD>2012-03-12</TD><TD ALIGN=RIGHT>24.560%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Chinese&nbsp;rhesus</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Chinese&nbsp;rhesus</TD>
   <TD>Oct.&nbsp;2010&nbsp;(BGI&nbsp;CR_1.0/rheMac3)</TD>
   <TD>Oct.&nbsp;2010&nbsp;(BGI&nbsp;CR_1.0/rheMac3)</TD>
   <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD>
   <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD>
Line 123: Line 137:
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>33.931%</TD>
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>33.931%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Papio<BR>hamadryas]</TD><TD>Baboon</TD>
   <TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Papio<BR>hamadryas]</TD><TD>Baboon</TD>
   <TD>Nov.&nbsp;2008&nbsp;(Baylor&nbsp;1.0/papHam1)</TD>
   <TD>Nov.&nbsp;2008&nbsp;(Baylor&nbsp;1.0/papHam1)</TD>
   <TD>Baylor BCM HGSC Pham_1.0</TD>
   <TD>Baylor BCM HGSC Pham_1.0</TD>
Line 130: Line 144:
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>33.577%</TD>
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>33.577%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD>
   <TD>Mar.&nbsp;2011&nbsp;(Broad&nbsp;OtoGar3/otoGar3)</TD>
   <TD>Mar.&nbsp;2011&nbsp;(Broad&nbsp;OtoGar3/otoGar3)</TD>
   <TD>Broad Institute (GCA_000181295.3)</TD>
   <TD>Broad Institute (GCA_000181295.3)</TD>
Line 137: Line 151:
   <TD>2012-03-13</TD><TD ALIGN=RIGHT>29.795%</TD>
   <TD>2012-03-13</TD><TD ALIGN=RIGHT>29.795%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
   <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
   <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
   <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
   <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
   <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
Line 144: Line 158:
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.450%</TD>
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.450%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD>
  <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Microcebus<BR>murinus]</TD><TD>Mouse&nbsp;lemur</TD>
  <TD>Jun.&nbsp;2003&nbsp;(Broad/micMur1)</TD>
  <TD>Broad Institute micMur1 (NCBI project 19967, ABDC00000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-13</TD><TD ALIGN=RIGHT>26.636%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
  <TD>Oct.&nbsp;2011&nbsp;(SaiBol1.0/saiBol1)</TD>
  <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
  <TD ALIGN=RIGHT>2012-01-07</TD>
  <TD ALIGN=RIGHT>2012-01-09</TD>
  <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.339%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD>
   <TD>Sep.&nbsp;2007&nbsp;(Broad/equCab2)</TD>
   <TD>Sep.&nbsp;2007&nbsp;(Broad/equCab2)</TD>
   <TD>Broad Institute EquCab2</TD>
   <TD>Broad Institute EquCab2</TD>
Line 151: Line 179:
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.415%</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.415%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRR01 Vicugna<BR>pacos]</TD><TD>Alpaca</TD>
  <TD>Feb.&nbsp;2008&nbsp;(Broad/cavPor3)</TD>
  <TD>Broad Institute cavPor3</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>2012-03-17</TD><TD ALIGN=RIGHT>28.447%</TD>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRR01 Vicugna<BR>pacos]</TD><TD>Alpaca</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/vicPac1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/vicPac1)</TD>
   <TD>Broad Institute vicPac1</TD>
   <TD>Broad Institute vicPac1</TD>
Line 165: Line 186:
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>22.636%</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>22.636%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/bottlenosedDolphin/Turtru1.0/ 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN00 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/bottlenosedDolphin/Turtru1.0/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN00 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TD>Feb.&nbsp;2008&nbsp;(Broad/turTru1)</TD>
   <TD>Feb.&nbsp;2008&nbsp;(Broad/turTru1)</TD>
   <TD>Broad Institute turTru1 (NCBI project 20367, ABRN01000000)</TD>
   <TD>Broad Institute turTru1 (NCBI project 20367, ABRN01000000)</TD>
Line 172: Line 193:
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>28.761%</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>28.761%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tupaia<BR>belangeri]</TD><TD>Tree&nbsp;shrew</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/84 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr2 susScr2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK00 Sus<BR>scrofa]</TD><TD>Pig</TD>
  <TD>Dec.&nbsp;2006&nbsp;(Broad/tupBel1)</TD>
  <TD>Broad Institute tupBel1 (NCBI project 13971, AAPY01000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-17</TD><TD ALIGN=RIGHT>19.766%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/84 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr2 susScr2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK00 Sus<BR>scrofa]</TD><TD>Pig</TD>
   <TD>Nov.&nbsp;2009&nbsp;(SGSC&nbsp;Sscrofa9.2/susScr2)</TD>
   <TD>Nov.&nbsp;2009&nbsp;(SGSC&nbsp;Sscrofa9.2/susScr2)</TD>
   <TD>SGSC Sscrofa9.2 (NCBI project 10718, GCA_000003025.2)</TD>
   <TD>SGSC Sscrofa9.2 (NCBI project 10718, GCA_000003025.2)</TD>
Line 186: Line 200:
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>23.248%</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>23.248%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/82 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD>
   <TD>Apr.&nbsp;2009&nbsp;(Broad/oryCun2)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Btau_4.6.1/bosTau7)</TD>
   <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD>
   <TD>Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-01-06</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>25.248%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>26.255%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Choloepus<BR>hoffmanni]</TD><TD>Sloth</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/83 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Ovis<BR>aries]</TD><TD>Sheep</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/choHof1)</TD>
   <TD>Feb.&nbsp;2010&nbsp;(ISGC&nbsp;Ovis_aries_1.0/oviAri1)</TD>
   <TD>Broad Institute choHof1</TD>
   <TD>ISGC (NCBI project 10709, accession GCA_000005525.1)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2010-04-14</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>18.019%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>15.341%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD>
  <TD>Oct.&nbsp;2011&nbsp;(BROAD&nbsp;v1.0/triMan1)</TD>
  <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD>
  <TD ALIGN=RIGHT>2012-03-28</TD>
  <TD ALIGN=RIGHT>2012-03-29</TD>
  <TD>2012-03-30</TD><TD ALIGN=RIGHT>26.546%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/pteVam1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/pteVam1)</TD>
   <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
   <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
Line 214: Line 221:
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>27.345%</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>27.345%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Felis_catus/catChr4/ 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACBE00 Felis<BR>catus]</TD><TD>Cat</TD>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/614 29]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD>
  <TD>Jul.&nbsp;2010&nbsp;(Broad&nbsp;Institute&nbsp;Myoluc2.0/myoLuc2)</TD>
  <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD>
  <TD ALIGN=RIGHT>2010-11-03</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-22</TD><TD ALIGN=RIGHT>24.363%</TD>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Felis_catus/catChr4/ 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACBE00 Felis<BR>catus]</TD><TD>Cat</TD>
   <TD>Dec.&nbsp;2008&nbsp;(NHGRI/GTB&nbsp;V17e/felCat4)</TD>
   <TD>Dec.&nbsp;2008&nbsp;(NHGRI/GTB&nbsp;V17e/felCat4)</TD>
   <TD>NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)</TD>
   <TD>NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)</TD>
Line 221: Line 235:
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>24.033%</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>24.033%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 29]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/85 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
  <TD>Sep.&nbsp;2011&nbsp;(Broad&nbsp;CanFam3.1/canFam3)</TD>
  <TD>Broad CanFam3.1 (GCA_000002285.2)</TD>
  <TD ALIGN=RIGHT>2012-01-05</TD>
  <TD ALIGN=RIGHT>2012-01-06</TD>
  <TD>2012-03-20</TD><TD ALIGN=RIGHT>29.144%</TD>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 32]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD>
   <TD>Dec.&nbsp;2009&nbsp;(BGI-Shenzhen&nbsp;1.0/ailMel1)</TD>
   <TD>Dec.&nbsp;2009&nbsp;(BGI-Shenzhen&nbsp;1.0/ailMel1)</TD>
   <TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD>
   <TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD>
Line 228: Line 249:
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>30.979%</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>30.979%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/85 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/227 Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD>
   <TD>Sep.&nbsp;2011&nbsp;(Broad&nbsp;CanFam3.1/canFam3)</TD>
  <TD>June&nbsp;2006&nbsp;(Broad/eriEur1)</TD>
   <TD>Broad CanFam3.1 (GCA_000002285.2)</TD>
  <TD>Broad Institute eriEur1 (Draft_v1, NCBI project 12575)</TD>
   <TD ALIGN=RIGHT>2012-01-05</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-01-06</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>29.144%</TD>
  <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.856%</TD>
</TR><TR>
  <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/91 Sorex<BR>araneus]</TD><TD>Shrew</TD>
   <TD>June&nbsp;2006&nbsp;(Broad/sorAra1)</TD>
   <TD>Broad Institute sorAra1 (Draft_v2)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.382%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD>
   <TH>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 35]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Choloepus<BR>hoffmanni]</TD><TD>Sloth</TD>
   <TD>Jul.&nbsp;2009&nbsp;(Broad/loxAfr3)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/choHof1)</TD>
   <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD>
   <TD>Broad Institute choHof1</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>25.823%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>18.019%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/ 32]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV00 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/ 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV00 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/dasNov2)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/dasNov2)</TD>
   <TD>Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)</TD>
   <TD>Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)</TD>
Line 248: Line 276:
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-23</TD><TD ALIGN=RIGHT>17.004%</TD>
   <TD>2012-03-23</TD><TD ALIGN=RIGHT>17.004%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/614 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD>
  <TD>Jul.&nbsp;2010&nbsp;(Broad&nbsp;Institute&nbsp;Myoluc2.0/myoLuc2)</TD>
  <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD>
  <TD ALIGN=RIGHT>2010-11-03</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-22</TD><TD ALIGN=RIGHT>24.363%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/82 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD>
  <TD>Oct.&nbsp;2011&nbsp;(Btau_4.6.1/bosTau7)</TD>
  <TD>Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)</TD>
  <TD ALIGN=RIGHT>2012-01-04</TD>
  <TD ALIGN=RIGHT>2012-01-06</TD>
  <TD>2012-03-22</TD><TD ALIGN=RIGHT>26.255%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/83 35]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Ovis<BR>aries]</TD><TD>Sheep</TD>
  <TD>Feb.&nbsp;2010&nbsp;(ISGC&nbsp;Ovis_aries_1.0/oviAri1)</TD>
  <TD>ISGC (NCBI project 10709, accession GCA_000005525.1)</TD>
  <TD ALIGN=RIGHT>2010-04-14</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-22</TD><TD ALIGN=RIGHT>15.341%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/771 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Ochotona<BR>princeps]</TD><TD>Pika</TD>
  <TD>Jul.&nbsp;2008&nbsp;(Broad/ochPri2)</TD>
  <TD>Broad Institute ochPri2</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-24</TD><TD ALIGN=RIGHT>14.542%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Procavia<BR>capensis]</TD><TD>Rock&nbsp;hyrax</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Procavia<BR>capensis]</TD><TD>Rock&nbsp;hyrax</TD>
Line 284: Line 284:
   <TD>2012-03-23</TD><TD ALIGN=RIGHT>15.147%</TD>
   <TD>2012-03-23</TD><TD ALIGN=RIGHT>15.147%</TD>
</TR><TR>
</TR><TR>
  <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/227 Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAIY00 Echinops<BR>telfairi]</TD><TD>Tenrec</TD>
  <TD>June&nbsp;2006&nbsp;(Broad/eriEur1)</TD>
  <TD>Broad Institute eriEur1 (Draft_v1, NCBI project 12575)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.856%</TD>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAIY00 Echinops<BR>telfairi]</TD><TD>Tenrec</TD>
   <TD>July&nbsp;2005&nbsp;(Broad/echTel1)</TD>
   <TD>July&nbsp;2005&nbsp;(Broad/echTel1)</TD>
   <TD>Broad July 2005</TD>
   <TD>Broad July 2005</TD>
Line 298: Line 291:
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>10.947%</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>10.947%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/91 Sorex<BR>araneus]</TD><TD>Shrew</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD>
   <TD>June&nbsp;2006&nbsp;(Broad/sorAra1)</TD>
  <TD>Oct.&nbsp;2011&nbsp;(BROAD&nbsp;v1.0/triMan1)</TD>
   <TD>Broad Institute sorAra1 (Draft_v2)</TD>
  <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD>
  <TD ALIGN=RIGHT>2012-03-28</TD>
  <TD ALIGN=RIGHT>2012-03-29</TD>
  <TD>2012-03-30</TD><TD ALIGN=RIGHT>26.546%</TD>
</TR><TR>
  <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD>
   <TD>Jul.&nbsp;2009&nbsp;(Broad/loxAfr3)</TD>
   <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.382%</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>25.823%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/233 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/233 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD>
Line 312: Line 312:
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>4.353%</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>4.353%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.broadinstitute.org/mammals/opossum 42]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 42]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian&nbsp;devil</TD>
  <TD>Oct.&nbsp;2006&nbsp;(Broad/monDom5)</TD>
  <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD>
  <TD ALIGN=RIGHT>2009-08-14</TD>
  <TD ALIGN=RIGHT>2009-08-14</TD>
  <TD>2012-03-30</TD><TD ALIGN=RIGHT>9.584%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 43]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian&nbsp;devil</TD>
   <TD>Feb.&nbsp;2011&nbsp;(WTSI&nbsp;Devil_ref&nbsp;v7.0/sarHar1)</TD>
   <TD>Feb.&nbsp;2011&nbsp;(WTSI&nbsp;Devil_ref&nbsp;v7.0/sarHar1)</TD>
   <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD>
   <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD>
Line 326: Line 319:
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>8.479%</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>8.479%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 44]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD>
   <TH>[http://www.broadinstitute.org/mammals/opossum 43]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>
   <TD>Sep.&nbsp;2011&nbsp;(WUSTL&nbsp;v6.3/melUnd1)</TD>
   <TD>Oct.&nbsp;2006&nbsp;(Broad/monDom5)</TD>
   <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD>
   <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD>
   <TD ALIGN=RIGHT>2012-03-27</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2012-03-28</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>3.589%</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>9.584%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/110 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/110 44]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD>
   <TD>Mar.&nbsp;2007&nbsp;(WUGSC&nbsp;5.0.1/ornAna1)</TD>
   <TD>Mar.&nbsp;2007&nbsp;(WUGSC&nbsp;5.0.1/ornAna1)</TD>
   <TD>WUSTL version 5.0.1</TD>
   <TD>WUSTL version 5.0.1</TD>
Line 340: Line 333:
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>5.348%</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>5.348%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/12107 46]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted&nbsp;turtle</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/111 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD>
  <TD>Dec.&nbsp;2011&nbsp;(v3.0.1/chrPic1)</TD>
  <TD>International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)</TD>
  <TD ALIGN=RIGHT>2012-03-27</TD>
  <TD ALIGN=RIGHT>2012-03-29</TD>
  <TD>2012-03-30</TD><TD ALIGN=RIGHT>4.731%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/111 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD>
   <TD>Nov.&nbsp;2011&nbsp;(ICGSC&nbsp;Gallus_gallus-4.0/galGal4)</TD>
   <TD>Nov.&nbsp;2011&nbsp;(ICGSC&nbsp;Gallus_gallus-4.0/galGal4)</TD>
   <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD>
   <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD>
Line 354: Line 340:
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.676%</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.676%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/367 48]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Taeniopygia<BR>guttata]</TD><TD>Zebra&nbsp;finch</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/367 46]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Taeniopygia<BR>guttata]</TD><TD>Zebra&nbsp;finch</TD>
   <TD>Jul.&nbsp;2008&nbsp;(WUGSC&nbsp;3.2.4/taeGut1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(WUGSC&nbsp;3.2.4/taeGut1)</TD>
   <TD>Washington University taeGut1</TD>
   <TD>Washington University taeGut1</TD>
Line 360: Line 346:
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.599%</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.599%</TD>
</TR><TR>
  <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD>
  <TD>Dec.&nbsp;2009&nbsp;(TGC&nbsp;Turkey_2.01/melGal1)</TD>
  <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD>
  <TD ALIGN=RIGHT>2010-11-04</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.511%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 48]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD>
  <TD>Sep.&nbsp;2011&nbsp;(WUSTL&nbsp;v6.3/melUnd1)</TD>
  <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD>
  <TD ALIGN=RIGHT>2012-03-27</TD>
  <TD ALIGN=RIGHT>2012-03-28</TD>
  <TD>2012-03-30</TD><TD ALIGN=RIGHT>3.589%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD>
Line 368: Line 368:
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.331%</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.331%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/12107 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted&nbsp;turtle</TD>
   <TD>Dec.&nbsp;2009&nbsp;(TGC&nbsp;Turkey_2.01/melGal1)</TD>
   <TD>Dec.&nbsp;2011&nbsp;(v3.0.1/chrPic1)</TD>
   <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD>
   <TD>International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)</TD>
   <TD ALIGN=RIGHT>2010-11-04</TD>
   <TD ALIGN=RIGHT>2012-03-27</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-03-29</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.511%</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>4.731%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 Xenopus<BR>tropicalis]</TD><TD>X.&nbsp;tropicalis</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 Xenopus<BR>tropicalis]</TD><TD>X.&nbsp;tropicalis</TD>
Line 396: Line 396:
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.726%</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.726%</TD>
</TR><TR>
</TR><TR>
  <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 54]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile&nbsp;tilapia</TD>
   <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 54]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD>
  <TD>Jan.&nbsp;2011&nbsp;(Nile&nbsp;tilapia/oreNil1)</TD>
  <TD>Broad Institute of MIT and Harvard Orenil1.0 (GCA_000188235.1)</TD>
  <TD ALIGN=RIGHT>2011-11-30</TD>
  <TD ALIGN=RIGHT>2011-11-30</TD>
  <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.957%</TD>
</TR><TR>
   <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 55]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD>
   <TD>Feb.&nbsp;2006&nbsp;(Broad/gasAcu1)</TD>
   <TD>Feb.&nbsp;2006&nbsp;(Broad/gasAcu1)</TD>
   <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
   <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
Line 410: Line 403:
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>2.016%</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>2.016%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.fugu-sg.org/ 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD>
   <TH>[http://www.fugu-sg.org/ 55]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD>
   <TD>Oct.&nbsp;2011&nbsp;(FUGU5/fr3)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(FUGU5/fr3)</TD>
   <TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD>
   <TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD>
Line 416: Line 409:
   <TD ALIGN=RIGHT>2011-11-17</TD>
   <TD ALIGN=RIGHT>2011-11-17</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.789%</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.789%</TD>
</TR><TR>
  <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile&nbsp;tilapia</TD>
  <TD>Jan.&nbsp;2011&nbsp;(Nile&nbsp;tilapia/oreNil1)</TD>
  <TD>Broad Institute of MIT and Harvard Orenil1.0 (GCA_000188235.1)</TD>
  <TD ALIGN=RIGHT>2011-11-30</TD>
  <TD ALIGN=RIGHT>2011-11-30</TD>
  <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.957%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>
   <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>

Revision as of 16:31, 5 April 2012

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence		 UCSC db name/
genome-preview
browser		 Scientific name/
assembly information		 Common
name		 assembly date source
version		 Repeat
Masker		 Window
Masker		 chain
on mm10		 % of mm10
matched
(chainLink table)
01mm10Mus
musculus		Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 N/AN/A
02rn4Rattus
norvegicus		Rat Nov. 2004 (Baylor 3.4/rn4) Baylor HGSC v. 3.4 2009-08-15 N/A 2012-03-0854.645%
03speTri2Spermophilus
tridecemlineatus		Squirrel Nov. 2011 (Broad SpeTri2/speTri2) Broad Institute (GCA_000236235.1) 2012-03-14 2012-03-15 2012-03-1634.217%
04dipOrd1Dipodomys
ordii		Kangaroo rat Jul. 2008 (Broad/dipOrd1) Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 2009-09-02 N/A 2012-03-1619.460%
05hetGla1Heterocephalus
glaber		Naked mole-rat Jul. 2011 (HetGla_1.0/hetGla1) HetGla_1.0 (NCBI project 68323, accession GCA_000230455.1) 2011-12-03 2011-12-06 2012-03-1632.163%
06cavPor3Cavia
porcellus		Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 2012-03-1728.447%
07oryCun2Oryctolagus
cuniculus		Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 N/A 2012-03-1725.248%
08ochPri2Ochotona
princeps		Pika Jul. 2008 (Broad/ochPri2) Broad Institute ochPri2 2009-09-02 N/A 2012-03-2414.542%
09tupBel1Tupaia
belangeri		Tree shrew Dec. 2006 (Broad/tupBel1) Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2009-09-02 N/A 2012-03-1719.766%
10hg19Homo
sapiens		Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 N/A 2012-03-0838.226%
11gorGor3Gorilla
gorilla
gorilla		Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 N/A 2012-03-0833.987%
12panTro4Pan
troglodytes		Chimp Feb. 2011 (Pan_troglodytes-2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2012-03-1034.674%
13nomLeu1Nomascus
leucogenys		Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1) GGSC (NCBI project 13975, accession GCA_000146795.1) 2011-11-16 N/A 2012-03-0834.132%
14ponAbe2Pongo
pygmaeus
abelii		Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 N/A 2012-03-0934.496%
15tarSyr1Tarsius
syrichta		Tarsier Aug. 2008 (Broad/tarSyr1) Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2009-09-02 N/A 2012-03-1224.560%
16rheMac3Macaca
mulatta		Chinese rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2012-03-0933.931%
17papHam1Papio
hamadryas		Baboon Nov. 2008 (Baylor 1.0/papHam1) Baylor BCM HGSC Pham_1.0 2009-09-02 N/A 2012-03-1033.577%
18otoGar3Otolemur
garnettii		Bushbaby Mar. 2011 (Broad OtoGar3/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2012-03-1329.795%
19calJac3Callithrix
jacchus		Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 N/A 2012-03-0932.450%
20micMur1Microcebus
murinus		Mouse lemur Jun. 2003 (Broad/micMur1) Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2009-09-02 N/A 2012-03-1326.636%
21saiBol1Saimiri
boliviensis		Squirrel monkey Oct. 2011 (SaiBol1.0/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2012-03-0932.339%
22equCab2Equus
caballus		Horse Sep. 2007 (Broad/equCab2) Broad Institute EquCab2 2009-08-14 N/A 2012-03-1634.415%
23vicPac1Vicugna
pacos		Alpaca Jul. 2008 (Broad/vicPac1) Broad Institute vicPac1 2009-09-02 N/A 2012-03-1722.636%
24turTru1Tursiops
truncatus		Dolphin Feb. 2008 (Broad/turTru1) Broad Institute turTru1 (NCBI project 20367, ABRN01000000) 2009-09-02 N/A 2012-03-1728.761%
25susScr2Sus
scrofa		Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) SGSC Sscrofa9.2 (NCBI project 10718, GCA_000003025.2) 2010-03-25 N/A 2012-03-1723.248%
26bosTau7Bos
taurus		Cow Oct. 2011 (Btau_4.6.1/bosTau7) Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) 2012-01-04 2012-01-06 2012-03-2226.255%
27oviAri1Ovis
aries		Sheep Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) ISGC (NCBI project 10709, accession GCA_000005525.1) 2010-04-14 N/A 2012-03-2215.341%
28pteVam1Pteropus
vampyrus		Megabat Jul. 2008 (Broad/pteVam1) Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2009-09-02 N/A 2012-03-2027.345%
29myoLuc2Myotis
lucifugus		Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) 2010-11-03 N/A 2012-03-2224.363%
30felCat4Felis
catus		Cat Dec. 2008 (NHGRI/GTB V17e/felCat4) NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000) 2010-05-26 N/A 2012-03-2024.033%
31canFam3Canis
lupus
familiaris		Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2012-03-2029.144%
32ailMel1Ailuropoda
melanoleuca		Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) BGI-Shenzhen AilMel 1.0 Dec. 2009 2010-02-03 N/A 2012-03-2030.979%
33eriEur1Erinaceus
europaeus		Hedgehog June 2006 (Broad/eriEur1) Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 2009-09-02 2009-09-02 2012-03-249.856%
34sorAra1Sorex
araneus		Shrew June 2006 (Broad/sorAra1) Broad Institute sorAra1 (Draft_v2) 2009-09-02 2009-09-02 2012-03-249.382%
35choHof1Choloepus
hoffmanni		Sloth Jul. 2008 (Broad/choHof1) Broad Institute choHof1 2009-09-02 N/A 2012-03-2218.019%
36dasNov2Dasypus
novemcinctus		Armadillo Jul. 2008 (Broad/dasNov2) Broad Institute dasNov2 (NCBI project 12594, AAGV020000000) 2009-09-02 N/A 2012-03-2317.004%
37proCap1Procavia
capensis		Rock hyrax Jul. 2008 (Broad/proCap1) Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 2009-09-02 N/A 2012-03-2315.147%
38echTel1Echinops
telfairi		Tenrec July 2005 (Broad/echTel1) Broad July 2005 2009-09-02 N/A 2012-03-2410.947%
39triMan1Trichechus
manatus
latirostris		Manatee Oct. 2011 (BROAD v1.0/triMan1) Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) 2012-03-28 2012-03-29 2012-03-3026.546%
40loxAfr3Loxodonta
africana		Elephant Jul. 2009 (Broad/loxAfr3) Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-09-02 N/A 2012-03-2025.823%
41macEug2Macropus
eugenii		Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) 2010-11-05 2011-12-02 2012-03-244.353%
42sarHar1Sarcophilus
harrisii		Tasmanian devil Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) 2012-02-02 2012-02-08 2012-03-308.479%
43monDom5Monodelphis
domestica		Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2012-03-309.584%
44ornAna1Ornithorhynchus
anatinus		Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) WUSTL version 5.0.1 2009-08-15 N/A 2012-03-305.348%
45galGal4Gallus
gallus		Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) ICGSC Gallus_gallus-4.0 (GCA_000002315.2) 2012-01-04 2012-01-04 2012-04-033.676%
46taeGut1Taeniopygia
guttata		Zebra finch Jul. 2008 (WUGSC 3.2.4/taeGut1) Washington University taeGut1 2009-08-14 2009-08-14 2012-04-033.599%
47melGal1Meleagris
gallopavo		Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 2010-11-04 N/A 2012-04-033.511%
48melUnd1Melopsittacus
undulatus		Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 2012-03-27 2012-03-28 2012-03-303.589%
49anoCar2Anolis
carolinensis		Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2012-04-033.331%
50chrPic1Chrysemys
picta
bellii		Painted turtle Dec. 2011 (v3.0.1/chrPic1) International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) 2012-03-27 2012-03-29 2012-03-304.731%
51xenTro3Xenopus
tropicalis		X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1) 2011-09-08 2011-09-08 2012-04-033.125%
52latCha1Latimeria
chalumnae		Coelacanth Aug. 2011 (LatCha1/latCha1) Broad LatCha1 (GCA_000225785.1) 2012-01-11 2012-01-12 2012-04-032.715%
53gadMor1Gadus
morhua		Atlantic cod May. 2010 (Genofisk GadMor_May2010/gadMor1) Genofisk GadMor_May2010 (GCA_000231765.1) 2011-12-29 2012-01-04 2012-04-031.726%
54gasAcu1Gasterosteus
aculeatus		Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-15 2012-04-032.016%
55fr3Takifugu
rubripes		Fugu Oct. 2011 (FUGU5/fr3) Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 2011-11-16 2011-11-17 2012-04-031.789%
56oreNil1Oreochromis
niloticus		Nile tilapia Jan. 2011 (Nile tilapia/oreNil1) Broad Institute of MIT and Harvard Orenil1.0 (GCA_000188235.1) 2011-11-30 2011-11-30 2012-04-031.957%
57tetNig2Tetraodon
nigroviridis		Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 2010-06-07 2009-09-02 2012-04-021.735%
58danRer7Danio
rerio		Zebrafish Jul. 2010 (Zv9/danRer7) Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) 2010-12-03 N/A 2012-04-032.602%
59oryLat2Oryzias
latipes		Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2009-08-15 2009-08-15 2012-04-031.936%
60petMar1Petromyzon
marinus		Lamprey Mar. 2007 (WUGSC 3.0/petMar1) WUSTL v.3.0 (March 2007) N/A 2009-08-14 2012-04-041.101%
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