Other genome browsers: Difference between revisions
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=== Plant Browsers === | === Plant Browsers === | ||
* [http://plants.ensembl.org/index.html EnsemblPlants] incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella | |||
* [http://epigenomics.mcdb.ucla.edu/ Arabidopsis] genome browser at UCLA | * [http://epigenomics.mcdb.ucla.edu/ Arabidopsis] genome browser at UCLA | ||
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* [http://altair.dartmouth.edu/cgi-bin/hgGateway?org=A.+thaliana&db=araTha9&hgsid=876/ Arabidopsis] genome browser at Dartmouth. | * [http://altair.dartmouth.edu/cgi-bin/hgGateway?org=A.+thaliana&db=araTha9&hgsid=876/ Arabidopsis] genome browser at Dartmouth. | ||
* [http://atensembl.arabidopsis.info/index.html Arabidopsis] Ensembl genome browser | * [http://atensembl.arabidopsis.info/index.html Arabidopsis] arabidopsis.info Ensembl-based genome browser | ||
* [http://shenlab.sols.unlv.edu/cgi-bin/hgGateway UNLV Las Vegas Genome Browser] hosting: Arabidopsis, rice, sorghum and soybean, as well as D. melanogaster | * [http://shenlab.sols.unlv.edu/cgi-bin/hgGateway UNLV Las Vegas Genome Browser] hosting: Arabidopsis, rice, sorghum and soybean, as well as D. melanogaster | ||
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* [http://genome.ccbr.utoronto.ca/ Cannabis sativa] Cannabis browser at U Toronto | * [http://genome.ccbr.utoronto.ca/ Cannabis sativa] Cannabis browser at U Toronto | ||
=== Yeast Browsers === | === Yeast Browsers === | ||
Revision as of 20:27, 18 June 2012
UCSC Genome mirror sites
- Medical College of Wisconsin Milwaukee, WI
- Duke University Durham, NC
- Cornell University Ithaca, NY
- Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark
- Australia Queensland Facility for Advanced Bioinformatics (QFAB)
Non-UCSC Mirror Browsers
Animal Browsers
- 1000 Genomes A Deep Catalog of Human Genetic Variation
- NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.
- Jim Watson genome browser at CSHL
- Craig Venter genome data release
- dbRIP - Retroposon Insertions Roswell Park Cancer Institute, MD
- Vista Lawrence Berkeley Lab, CA
- GARFIELD cat genome browser, Federick, MD
- C. intestinalis: UCSC-based, Gbrowse
- The JGI-browser for various species: Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc...
- Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse
- Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis.
- Eyebrowse specializing in eye tissue sequences
- Silkworm Bombyx mori, China
- UNLV Las Vegas Genome Browser hosting: D. melanogaster and some plants
- NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program
Plant Browsers
- EnsemblPlants incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella
- Arabidopsis genome browser at UCLA
- Arabidopsis genome browser at Dartmouth.
- Arabidopsis arabidopsis.info Ensembl-based genome browser
- UNLV Las Vegas Genome Browser hosting: Arabidopsis, rice, sorghum and soybean, as well as D. melanogaster
- gramene.org many rice genomes and other grasses
- RICE FPC Genome Browser from the Arizona Genomics Institute (AGI)
- Zea mays Maize Genome Sequencing Project
- Cannabis sativa Cannabis browser at U Toronto
Yeast Browsers
- Saccharomyces cerevisiae database and genome browser
- S. pombe (fission yeast) at NCI, NIH
Other
- Paramecium tetraurelia Genoscope, France
- JPGV Jena Prokaryotic Genome Browser
