Hg19 100way conservation lastz parameters: Difference between revisions
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<TD ALIGN=RIGHT>89.943%</TD></TR> | <TD ALIGN=RIGHT>89.943%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Rhesus rheMac3</TH> | ||
<TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD> | <TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD> | ||
<TD>15000</TD><TD>lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD> | <TD>15000</TD><TD>lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD> | ||
<TD>2013- | <TD>2013-07-04</TD><TD ALIGN=RIGHT>82.859%</TD> | ||
<TD ALIGN=RIGHT>88. | <TD ALIGN=RIGHT>88.131%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Macaca fascicularis macFas5</TH> | <TH>Macaca fascicularis macFas5</TH> | ||
| Line 89: | Line 89: | ||
<TD>2013-06-30</TD><TD ALIGN=RIGHT>86.666%</TD> | <TD>2013-06-30</TD><TD ALIGN=RIGHT>86.666%</TD> | ||
<TD ALIGN=RIGHT>86.757%</TD></TR> | <TD ALIGN=RIGHT>86.757%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Baboon papHam1</TH> | <TH>Baboon papHam1</TH> | ||
| Line 102: | Line 96: | ||
<TD ALIGN=RIGHT>85.825%</TD></TR> | <TD ALIGN=RIGHT>85.825%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Chlorocebus sabaeus chlSab1</TH> | ||
<TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD> | <TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD> | ||
<TD>15000</TD><TD>lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD> | <TD>15000</TD><TD>lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD> | ||
<TD>2013-06-30</TD><TD ALIGN=RIGHT> | <TD>2013-06-30</TD><TD ALIGN=RIGHT>86.446%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>88.132%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Marmoset calJac3</TH> | <TH>Marmoset calJac3</TH> | ||
| Line 113: | Line 107: | ||
<TD>2010-02-11</TD><TD ALIGN=RIGHT>70.654%</TD> | <TD>2010-02-11</TD><TD ALIGN=RIGHT>70.654%</TD> | ||
<TD ALIGN=RIGHT>73.768%</TD></TR> | <TD ALIGN=RIGHT>73.768%</TD></TR> | ||
<TR> | |||
<TH>Squirrel monkey saiBol1</TH> | |||
<TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD> | |||
<TD>15000</TD><TD>lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD> | |||
<TD>2013-06-30</TD><TD ALIGN=RIGHT>69.598%</TD> | |||
<TD ALIGN=RIGHT>78.834%</TD></TR> | |||
<TR> | <TR> | ||
<TH>Bushbaby otoGar3</TH> | <TH>Bushbaby otoGar3</TH> | ||
| Line 126: | Line 126: | ||
<TD ALIGN=RIGHT>50.286%</TD></TR> | <TD ALIGN=RIGHT>50.286%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Squirrel speTri2</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>in progress</TD><TD ALIGN=RIGHT>in progress</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>N/A</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Jaculus jaculus jacJac1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2013-07-16</TD><TD ALIGN=RIGHT>35.106%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>40.217%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Microtus ochrogaster micOch1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013- | <TD>2013-08-27</TD><TD ALIGN=RIGHT>32.285%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>43.185%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Cricetulus griseus criGri1</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH> | <TH>Mesocricetus auratus mesAur1</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH> | <TH>Mouse mm10</TH> | ||
<TD> | <TD>yes</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2012-03-07</TD><TD ALIGN=RIGHT>35.249%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>38.226%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Rat rn5</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2012-06-27</TD><TD ALIGN=RIGHT>31.662%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>36.299%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Octodon degus octDeg1</TH> | <TH>Octodon degus octDeg1</TH> | ||
| Line 189: | Line 168: | ||
<TD ALIGN=RIGHT>47.619%</TD></TR> | <TD ALIGN=RIGHT>47.619%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Naked mole-rat hetGla2</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2013-07-17</TD><TD ALIGN=RIGHT>47.600%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>58.818%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Guinea pig cavPor3</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2009-09-02</TD><TD ALIGN=RIGHT> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>43.680%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>48.043%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Chinchilla chiLan1</TH> | ||
<TD>no</TD><TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | |||
<TH>Rabbit oryCun2</TH> | |||
<TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>44.317%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>48.405%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Pika ochPri3</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2013-06-18</TD><TD ALIGN=RIGHT>34.676%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>49.855%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Pig susScr3</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>in progress</TD><TD ALIGN=RIGHT>in progress</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>N/A</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Alpaca vicPac2</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013- | <TD>2013-06-18</TD><TD ALIGN=RIGHT>50.193%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>68.707%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Camelus ferus camFer1</TH> | ||
<TD>no</TD><TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2013-07-13</TD><TD ALIGN=RIGHT>50.419%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>71.204%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Dolphin turTru2</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013- | <TD>2013-08-20</TD><TD ALIGN=RIGHT>51.158%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>61.364%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Orcinus orca orcOrc1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013- | <TD>2013-08-01</TD><TD ALIGN=RIGHT>52.072%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>64.296%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Pantholops hodgsonii panHod1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-07- | <TD>2013-07-17</TD><TD ALIGN=RIGHT>46.863%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>52.463%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Cow bosTau7</TH> | <TH>Cow bosTau7</TH> | ||
<TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
| Line 270: | Line 236: | ||
<TD>2012-01-23</TD><TD ALIGN=RIGHT>46.971%</TD> | <TD>2012-01-23</TD><TD ALIGN=RIGHT>46.971%</TD> | ||
<TD ALIGN=RIGHT>49.508%</TD></TR> | <TD ALIGN=RIGHT>49.508%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Sheep oviAri3</TH> | <TH>Sheep oviAri3</TH> | ||
| Line 283: | Line 243: | ||
<TD ALIGN=RIGHT>51.939%</TD></TR> | <TD ALIGN=RIGHT>51.939%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Capra hircus capHir1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-07-17</TD><TD ALIGN=RIGHT> | <TD>2013-07-17</TD><TD ALIGN=RIGHT>46.498%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>52.616%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Horse equCab2</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>57.050%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>66.774%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>White rhinoceros cerSim1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2012-10-19</TD><TD ALIGN=RIGHT>58.103%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>69.204%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Cat felCat5</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2013-07-13</TD><TD ALIGN=RIGHT>52.426%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>61.479%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Ferret musFur1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-07- | <TD>2013-07-12</TD><TD ALIGN=RIGHT>50.993%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>62.328%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Dog canFam3</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2012-07-04</TD><TD ALIGN=RIGHT>51.848%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>60.817%</TD></TR> | ||
<TR> | |||
<TH>Panda ailMel1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>default</TD> | |||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD> | |||
<TD>2010-02-04</TD><TD ALIGN=RIGHT>50.022%</TD> | |||
<TD ALIGN=RIGHT>62.884%</TD></TR> | |||
uncat: C | |||
<TR> | <TR> | ||
<TH> | <TH>Odobenus rosmarus divergens odoRosDiv1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-07- | <TD>2013-07-13</TD><TD ALIGN=RIGHT>53.559%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>64.797%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Leptonychotes weddellii lepWed1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013- | <TD>2013-07-12</TD><TD ALIGN=RIGHT>52.424%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>65.567%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Pteropus alecto pteAle1</TH> | ||
<TD | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | |||
<TH>Megabat pteVam1</TH> | |||
<TR> | |||
<TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>45.414%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>69.685%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Myotis Davidii myoDav1</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH> | <TH>Microbat myoLuc2</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH> | <TH>Eptesicus fuscus eptFus1</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>Hedgehog eriEur2</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-07-09</TD><TD ALIGN=RIGHT>26.149%</TD> | |||
<TD ALIGN=RIGHT>31.250%</TD></TR> | |||
<TR> | |||
<TH>Shrew sorAra2</TH> | <TH>Shrew sorAra2</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
| Line 361: | Line 328: | ||
<TD ALIGN=RIGHT>35.514%</TD></TR> | <TD ALIGN=RIGHT>35.514%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Condylura cristata conCri1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-07-10</TD><TD ALIGN=RIGHT>37.034%</TD> | |||
<TD ALIGN=RIGHT>60.981%</TD></TR> | |||
<TR> | |||
<TH>Elephant loxAfr3</TH> | |||
<TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>46.636%</TD> | |||
<TD ALIGN=RIGHT>42.430%</TD></TR> | |||
<TR> | |||
<TH>Elephantulus edwardii eleEdw1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-07-09</TD><TD ALIGN=RIGHT>27.675%</TD> | |||
<TD ALIGN=RIGHT>24.222%</TD></TR> | |||
<TR> | |||
<TH>Chrysochloris asiatica chrAsi1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-07-09</TD><TD ALIGN=RIGHT>34.209%</TD> | |||
<TD ALIGN=RIGHT>29.033%</TD></TR> | |||
<TR> | |||
<TH>Orycteropus afer oryAfe1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-07-09</TD><TD ALIGN=RIGHT>41.668%</TD> | |||
<TD ALIGN=RIGHT>34.051%</TD></TR> | |||
<TR> | |||
<TH>Tenrec echTel2</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-06-17</TD><TD ALIGN=RIGHT>30.135%</TD> | |||
<TD ALIGN=RIGHT>32.736%</TD></TR> | |||
<TR> | |||
<TH>Manatee triMan1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-07-11</TD><TD ALIGN=RIGHT>46.580%</TD> | |||
<TD ALIGN=RIGHT>46.912%</TD></TR> | |||
<TR> | |||
<TH>Armadillo dasNov3</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-07- | <TD>2013-07-09</TD><TD ALIGN=RIGHT>46.571%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>41.884%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Opossum monDom5</TH> | <TH>Opossum monDom5</TH> | ||
| Line 373: | Line 382: | ||
<TD ALIGN=RIGHT>11.615%</TD></TR> | <TD ALIGN=RIGHT>11.615%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Tasmanian devil sarHar1</TH> | <TH>Tasmanian devil sarHar1</TH> | ||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
| Line 382: | Line 388: | ||
<TD ALIGN=RIGHT>6.937%</TD></TR> | <TD ALIGN=RIGHT>6.937%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Wallaby macEug2</TH> | ||
<TD | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
</ | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
< | <TD>2013-07-11</TD><TD ALIGN=RIGHT>6.534%</TD> | ||
<TD ALIGN=RIGHT>7.229%</TD></TR> | |||
</ | <TR> | ||
< | |||
<TD | |||
</TR><TR> | |||
<TH>Platypus ornAna1</TH> | <TH>Platypus ornAna1</TH> | ||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
| Line 396: | Line 399: | ||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>7.627%</TD> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>7.627%</TD> | ||
<TD ALIGN=RIGHT>11.259%</TD></TR> | <TD ALIGN=RIGHT>11.259%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Falco cherrug falChe1</TH> | <TH>Falco cherrug falChe1</TH> | ||
| Line 415: | Line 412: | ||
<TD ALIGN=RIGHT>8.365%</TD></TR> | <TD ALIGN=RIGHT>8.365%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Ficedula albicollis ficAlb2</TH> | ||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-06- | <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.715%</TD> | ||
<TD ALIGN=RIGHT>8. | <TD ALIGN=RIGHT>8.625%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Zonotrichia albicollis zonAlb1</TH> | ||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-06- | <TD>2013-06-26</TD><TD ALIGN=RIGHT>3.476%</TD> | ||
<TD ALIGN=RIGHT>8. | <TD ALIGN=RIGHT>8.622%</TD></TR> | ||
<TR> | |||
<TH>Medium ground finch geoFor1</TH> | |||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2012-07-29</TD><TD ALIGN=RIGHT>3.503%</TD> | |||
<TD ALIGN=RIGHT>8.504%</TD></TR> | |||
<TR> | |||
<TH>Zebra finch taeGut2</TH> | |||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz-distrib-1.03.02/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-06-17</TD><TD ALIGN=RIGHT>5.321%</TD> | |||
<TD ALIGN=RIGHT>11.613%</TD></TR> | |||
<TR> | <TR> | ||
<TH> | <TH>Pseudopodoces humilis pseHum1</TH> | ||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-06-29</TD><TD ALIGN=RIGHT>3. | <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.982%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>9.685%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Budgerigar melUnd1</TH> | ||
<TD>no</TD><TD>0</TD><TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | ||
<TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.577%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>8.237%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Parrot amaVit1</TH> | <TH>Parrot amaVit1</TH> | ||
| Line 451: | Line 460: | ||
<TD ALIGN=RIGHT>7.320%</TD></TR> | <TD ALIGN=RIGHT>7.320%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Columba livia colLiv1</TH> | ||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-06- | <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.683%</TD> | ||
<TD ALIGN=RIGHT>8. | <TD ALIGN=RIGHT>8.468%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Anas platyrhynchos anaPla1</TH> | ||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-06- | <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.509%</TD> | ||
<TD ALIGN=RIGHT>8. | <TD ALIGN=RIGHT>8.215%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Chicken galGal4</TH> | ||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2011- | <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.684%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>8.990%</TD></TR> | ||
<TR> | |||
<TH>Turkey melGal1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2011-03-28</TD><TD ALIGN=RIGHT>2.645%</TD> | |||
<TD ALIGN=RIGHT>6.637%</TD></TR> | |||
<TR> | <TR> | ||
<TH> | <TH>American alligator allMis1</TH> | ||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2013-06- | <TD>2013-06-28</TD><TD ALIGN=RIGHT>7.084%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>8.120%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Chelonia mydas cheMyd1</TH> | ||
<TD>no</TD><TD>0</TD><TD> | <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | ||
<TD> | <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>2013-08-28</TD><TD ALIGN=RIGHT>3.696%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>4.551%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Painted turtle chrPic1</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH> | <TH>Pelodiscus sinensis pelSin1</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>Apalone spinifera apaSpi1</TH> | |||
<TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD> | |||
<TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-08-28</TD><TD ALIGN=RIGHT>2.952%</TD> | |||
<TD ALIGN=RIGHT>3.928%</TD></TR> | |||
<TR> | |||
<TH>Lizard anoCar2</TH> | |||
<TD>no</TD><TD>0</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2011-04-19</TD><TD ALIGN=RIGHT>3.552%</TD> | |||
<TD ALIGN=RIGHT>5.190%</TD></TR> | |||
<TR> | |||
<TH>X. tropicalis xenTro7</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>in progress</TD><TD ALIGN=RIGHT>in progress</TD> | |||
<TD ALIGN=RIGHT>N/A</TD></TR> | |||
<TR> | |||
<TH>Coelacanth latCha1</TH> | <TH>Coelacanth latCha1</TH> | ||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
| Line 505: | Line 526: | ||
<TD ALIGN=RIGHT>3.419%</TD></TR> | <TD ALIGN=RIGHT>3.419%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Tetraodon tetNig2</TH> | ||
<TD | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
</TR><TR> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TH> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.712%</TD> | ||
<TD ALIGN=RIGHT>14.194%</TD></TR> | |||
<TR> | |||
<TH>Fugu fr3</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-08-20</TD><TD ALIGN=RIGHT>1.703%</TD> | |||
<TD ALIGN=RIGHT>12.282%</TD></TR> | |||
<TR> | |||
<TH>Takifugu flavidus takFla1</TH> | |||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>Nile tilapia oreNil2</TH> | <TH>Nile tilapia oreNil2</TH> | ||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD> | <TD>in progress</TD><TD ALIGN=RIGHT>in progress</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>N/A</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Neolamprologus brichardi neoBri1</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH> | <TH>Haplochromis burtoni hapBur1</TH> | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
| Line 538: | Line 559: | ||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH> | <TH>Medaka oryLat2</TH> | ||
<TD | <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | ||
</TR><TR> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TH> | <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.849%</TD> | ||
<TD ALIGN=RIGHT>6.705%</TD></TR> | |||
<TR> | |||
<TH>Xiphophorus maculatus xipMac1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2013-08-28</TD><TD ALIGN=RIGHT>1.842%</TD> | |||
<TD ALIGN=RIGHT>7.324%</TD></TR> | |||
<TR> | |||
<TH>Stickleback gasAcu1</TH> | |||
<TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD> | |||
<TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | |||
<TD>2009-09-02</TD><TD ALIGN=RIGHT>1.916%</TD> | |||
<TD ALIGN=RIGHT>11.175%</TD></TR> | |||
<TR> | |||
<TH>Atlantic cod gadMor1</TH> | |||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
| Line 550: | Line 586: | ||
<TD ALIGN=RIGHT>6.151%</TD></TR> | <TD ALIGN=RIGHT>6.151%</TD></TR> | ||
<TR> | <TR> | ||
<TH> | <TH>Astyanax mexicanus astMex1</TH> | ||
<TD | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | |||
<TH>Lepisosteus oculatus lepOcu1</TH> | |||
<TR> | |||
<TH> | |||
<TD COLSPAN=14 ALIGN=center>TBD</TD> | <TD COLSPAN=14 ALIGN=center>TBD</TD> | ||
</TR><TR> | </TR><TR> | ||
Revision as of 22:13, 28 August 2013
See Also
- 100way statistics interactive table
- Human 100-way Hg19 100way Genome size statistics
- Human 100-way Hg19 100way conservation alignment
- all other UCSC Multiple Alignments
| The default scoring matrix is: | The HoxD55 scoring matrix is: | The human-chimp.v2 scoring matrix is: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
O=400 E=30 |
O=400 E=30 |
O=600 E=150 |
do not edit, automatically generated table
uncat: C
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of hg19 matched (chainLink table) |
% of query matched (chainLinkHg19) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chimp panTro4 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz-distrib-1.03.02/bin/lastz | 150 | 2000 | 600 | 2 | 2013-01-25 | 95.279% | 95.563% |
| Gorilla gorGor3 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2011-10-17 | 89.876% | 91.109% |
| Orangutan ponAbe2 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2009-08-15 | 91.350% | 89.617% |
| Gibbon nomLeu3 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2013-03-22 | 87.764% | 89.943% |
| Rhesus rheMac3 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2013-07-04 | 82.859% | 88.131% |
| Macaca fascicularis macFas5 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2013-06-30 | 86.666% | 86.757% |
| Baboon papHam1 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2009-09-02 | 82.810% | 85.825% |
| Chlorocebus sabaeus chlSab1 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2013-06-30 | 86.446% | 88.132% |
| Marmoset calJac3 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2010-02-11 | 70.654% | 73.768% |
| Squirrel monkey saiBol1 | no | 254 | 4500 | 3000 | human_chimp.v2.q | 15000 | lastz | 150 | 2000 | 600 | 2 | 2013-06-30 | 69.598% | 78.834% |
| Bushbaby otoGar3 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-02 | 54.830% | 65.026% |
| Tupaia chinensis tupChi1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-06 | 46.558% | 50.286% |
| Squirrel speTri2 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | in progress | in progress | N/A |
| Jaculus jaculus jacJac1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-16 | 35.106% | 40.217% |
| Microtus ochrogaster micOch1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-08-27 | 32.285% | 43.185% |
| Cricetulus griseus criGri1 | TBD | |||||||||||||
| Mesocricetus auratus mesAur1 | TBD | |||||||||||||
| Mouse mm10 | yes | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2012-03-07 | 35.249% | 38.226% |
| Rat rn5 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2012-06-27 | 31.662% | 36.299% |
| Octodon degus octDeg1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-07 | 41.385% | 47.619% |
| Naked mole-rat hetGla2 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-17 | 47.600% | 58.818% |
| Guinea pig cavPor3 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 43.680% | 48.043% |
| Chinchilla chiLan1 | TBD | |||||||||||||
| Rabbit oryCun2 | no | 50 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 44.317% | 48.405% |
| Pika ochPri3 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2013-06-18 | 34.676% | 49.855% |
| Pig susScr3 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | in progress | in progress | N/A |
| Alpaca vicPac2 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2013-06-18 | 50.193% | 68.707% |
| Camelus ferus camFer1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-13 | 50.419% | 71.204% |
| Dolphin turTru2 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-08-20 | 51.158% | 61.364% |
| Orcinus orca orcOrc1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-08-01 | 52.072% | 64.296% |
| Pantholops hodgsonii panHod1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-17 | 46.863% | 52.463% |
| Cow bosTau7 | no | 254 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2012-01-23 | 46.971% | 49.508% |
| Sheep oviAri3 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2013-06-26 | 46.833% | 51.939% |
| Capra hircus capHir1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-17 | 46.498% | 52.616% |
| Horse equCab2 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 57.050% | 66.774% |
| White rhinoceros cerSim1 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2012-10-19 | 58.103% | 69.204% |
| Cat felCat5 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-13 | 52.426% | 61.479% |
| Ferret musFur1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-12 | 50.993% | 62.328% |
| Dog canFam3 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2012-07-04 | 51.848% | 60.817% |
| Panda ailMel1 | no | 50 | 2200 | 6000 | default | 3400 | lastz | 30 | 2000 | 400 | 2 | 2010-02-04 | 50.022% | 62.884% |
| Odobenus rosmarus divergens odoRosDiv1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-13 | 53.559% | 64.797% |
| Leptonychotes weddellii lepWed1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-12 | 52.424% | 65.567% |
| Pteropus alecto pteAle1 | TBD | |||||||||||||
| Megabat pteVam1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 45.414% | 69.685% |
| Myotis Davidii myoDav1 | TBD | |||||||||||||
| Microbat myoLuc2 | TBD | |||||||||||||
| Eptesicus fuscus eptFus1 | TBD | |||||||||||||
| Hedgehog eriEur2 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-09 | 26.149% | 31.250% |
| Shrew sorAra2 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2013-06-18 | 27.681% | 35.514% |
| Condylura cristata conCri1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-10 | 37.034% | 60.981% |
| Elephant loxAfr3 | no | 50 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 46.636% | 42.430% |
| Elephantulus edwardii eleEdw1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-09 | 27.675% | 24.222% |
| Chrysochloris asiatica chrAsi1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-09 | 34.209% | 29.033% |
| Orycteropus afer oryAfe1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-09 | 41.668% | 34.051% |
| Tenrec echTel2 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2013-06-17 | 30.135% | 32.736% |
| Manatee triMan1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-11 | 46.580% | 46.912% |
| Armadillo dasNov3 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-09 | 46.571% | 41.884% |
| Opossum monDom5 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 14.358% | 11.615% |
| Tasmanian devil sarHar1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-10 | 7.414% | 6.937% |
| Wallaby macEug2 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-11 | 6.534% | 7.229% |
| Platypus ornAna1 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 7.627% | 11.259% |
| Falco cherrug falChe1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-27 | 3.812% | 8.232% |
| Falco peregrinus falPer1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-27 | 3.879% | 8.365% |
| Ficedula albicollis ficAlb2 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-29 | 3.715% | 8.625% |
| Zonotrichia albicollis zonAlb1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-26 | 3.476% | 8.622% |
| Medium ground finch geoFor1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2012-07-29 | 3.503% | 8.504% |
| Zebra finch taeGut2 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2013-06-17 | 5.321% | 11.613% |
| Pseudopodoces humilis pseHum1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-29 | 3.982% | 9.685% |
| Budgerigar melUnd1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-27 | 3.577% | 8.237% |
| Parrot amaVit1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-28 | 3.298% | 7.807% |
| Ara macao araMac1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-29 | 2.912% | 7.320% |
| Columba livia colLiv1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-29 | 3.683% | 8.468% |
| Anas platyrhynchos anaPla1 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-27 | 3.509% | 8.215% |
| Chicken galGal4 | no | 0 | 2200 | 10000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-29 | 3.684% | 8.990% |
| Turkey melGal1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2011-03-28 | 2.645% | 6.637% |
| American alligator allMis1 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-06-28 | 7.084% | 8.120% |
| Chelonia mydas cheMyd1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-08-28 | 3.696% | 4.551% |
| Painted turtle chrPic1 | TBD | |||||||||||||
| Pelodiscus sinensis pelSin1 | TBD | |||||||||||||
| Apalone spinifera apaSpi1 | no | 0 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2013-08-28 | 2.952% | 3.928% |
| Lizard anoCar2 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-04-19 | 3.552% | 5.190% |
| X. tropicalis xenTro7 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | in progress | in progress | N/A |
| Coelacanth latCha1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-07-16 | 2.749% | 3.419% |
| Tetraodon tetNig2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 1.712% | 14.194% |
| Fugu fr3 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-08-20 | 1.703% | 12.282% |
| Takifugu flavidus takFla1 | TBD | |||||||||||||
| Nile tilapia oreNil2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | in progress | in progress | N/A |
| Neolamprologus brichardi neoBri1 | TBD | |||||||||||||
| Haplochromis burtoni hapBur1 | TBD | |||||||||||||
| Maylandia zebra mayZeb1 | TBD | |||||||||||||
| Pundamilia nyererei punNye1 | TBD | |||||||||||||
| Medaka oryLat2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 1.849% | 6.705% |
| Xiphophorus maculatus xipMac1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2013-08-28 | 1.842% | 7.324% |
| Stickleback gasAcu1 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 1.916% | 11.175% |
| Atlantic cod gadMor1 | TBD | |||||||||||||
| Zebrafish danRer7 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2010-12-18 | 2.790% | 6.151% |
| Astyanax mexicanus astMex1 | TBD | |||||||||||||
| Lepisosteus oculatus lepOcu1 | TBD | |||||||||||||
| Lamprey petMar2 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.02/bin/lastz | 30 | 2000 | 400 | 1 | 2012-10-17 | 1.046% | 3.324% |
