GapOverlap

methods

The measurements are taken from the gapOverlap.bed[.gz] file in /hive/data/genomes/<db>/bed/gapOverlap/gapOverlap.bed[.gz] The score column in the bed file (column 5) is the size of the duplicated sequence. The gap size between the duplicated sequence is calculated from: end - start + 2 * score

The size of the duplicated sequence is between 30 bases and 1000 bases, we are not checking for sizes outside that range.

The item total is the sum of the sizes of the duplicated sequences. Not both sides though, just one side. This indicates how much sequence is duplicated. Multiply this by 2 to see total amount of sequence involved in these repeats for both sides.

The gap total is the sum of the sizes of all the gaps involved.

table features

The table columns can be sorted, click on the up/down arrow icon in the column header. The 'year' is what we have in the dbDb table as indicated from the assembly information files for the date of the assembly. A few do not have dates (set to 1880), and do not have database genome browsers.

The example item is a worst case example, where the ratio of duplicate sequence size to gap size is the highest, i.e. smallest gap with largest dup size

These ends were found by taking 1,000 bases on each side of any run of N's in the sequence, thus any gap, and aligned with the blat command:

 blat -q=dna -minIdentity=95 -repMatch=10 upstream.fa downstream.fa

Filtering the PSL output for a perfect match, no mis-matches, and therefore of equal size matching sequence, where the alignment ends exactly at the end of the upstream sequence before the gap and begins exactly at the start of the downstream sequence after the gap.

gapOverlap table statistics

count	year	dbName	ncbiAsmId	assembly method	item count	item median	item total		gap median	gap total	example item dup size, gap size, link	scatter plot dup size vs. gap size
001	2016	WSB_EiJ	GCA_001624835.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	11455	236	3524308		25	10785288	994, 1, chrX:58921651-58923639	plot GCA_001624835.1_WSB_EiJ_v1
002	2016	A_J	GCA_001624215.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	38843	80	6428892		25	14025482	1000, 1, chr17:63064911-63066911	plot GCA_001624215.1_A_J_v1
003	2016	CBA_J	GCA_001624475.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	24180	279.5	7933814		26	26736971	999, 1, chr16:100093490-100095488	plot GCA_001624475.1_CBA_J_v1
004	2016	CAROLI_EIJ	GCA_900094665.1	tbd	6469	70	484857		1	599072	945, 1, chr1:145228793-145230683	plot GCA_900094665.1_CAROLI_EIJ_v1
005	2016	LP_J	GCA_001632615.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	18175	98	5185817		25	13674278	997, 1, chr12:42758762-42760756	plot GCA_001632615.1_LP_J_v1
006	2016	BALB_cJ	GCA_001632525.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	15793	363	5543975		25	10053337	999, 1, chr4:59636957-59638955	plot GCA_001632525.1_BALB_cJ_v1
007	2016	PAHARI_EIJ	GCA_900095145.1	tbd	6365	69	479534		1	675789	1000, 1, chr7:107557946-107559946	plot GCA_900095145.1_PAHARI_EIJ_v1
008	2016	PWK_PhJ	GCA_001624775.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	246352	65	16823451		25	10585326	1000, 11, chrX:47500642-47502652	plot GCA_001624775.1_PWK_PhJ_v1
009	2016	DBA_2J	GCA_001624505.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	13245	98	3606947		25	7251641	999, 1, chr10:47277903-47279901	plot GCA_001624505.1_DBA_2J_v1
010	2016	NOD_ShiLtJ	GCA_001624675.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	36838	172	10515906		26	25076950	1000, 1, chr15:69777938-69779938	plot GCA_001624675.1_NOD_ShiLtJ_v1
011	2016	SPRET_EiJ	GCA_001624865.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail genomics v. August-2015; Ragout v. 2.0b	17567	516	8157541		100	12022683	1000, 1, chr10:66049175-66051175	plot GCA_001624865.1_SPRET_EiJ_v1
012	2016	NZO_HlLtJ	GCA_001624745.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	21209	448	8647582		25	14665906	1000, 1, chr10:29328015-29330015	plot GCA_001624745.1_NZO_HlLtJ_v1
013	2016	129S1_SvImJ	GCA_001624185.1	SGA v. 0.9.19; Ragout v. 2.0b	20479	400	7813478		25	15456883	1000, 1, chr15:34994444-34996444	plot GCA_001624185.1_129S1_SvImJ_v1
014	2016	C57BL_6NJ	GCA_001632555.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	24698	97	6239791		25	14404336	992, 1, chr10:109927459-109929443	plot GCA_001632555.1_C57BL_6NJ_v1
015	2016	AKR_J	GCA_001624295.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	18106	335	6717178		25	14468858	1000, 1, chr16:53464467-53466467	plot GCA_001624295.1_AKR_J_v1
016	2016	CAST_EiJ	GCA_001624445.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail Genomics v. August-2015; Ragout v. 2.0b	14714	324	5063290		100	10013826	1000, 1, chr12:100100159-100102159	plot GCA_001624445.1_CAST_EiJ_v1
017	2016	C3H_HeJ	GCA_001632575.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	19436	307	6287513		26	12931709	1000, 1, chr1:52782023-52784023	plot GCA_001632575.1_C3H_HeJ_v1
018	2016	FVB_NJ	GCA_001624535.1	SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b	14811	355	4902432		11	8504942	1000, 1, chr17:22790916-22792916	plot GCA_001624535.1_FVB_NJ_v1
019	2013	CHM1	GCF_000306695.2	SRPRISM v. 2.4.28-alpha; ARGO v. 0.1	85	86	10897		88	65164	319, 10, chr6:108876987-108877634	plot CHM1
020	2014	acaChl1	GCF_000695815.1	SOAPdenovo v. 1.6	5	170	1250		188	2340	722, 188, KK833582:5976-7607	plot acaChl1
023	2009	ailMel1	GCF_000004335.2	tbd	48	104	10594		1193	82504	75, 1, GL192694.1:348745-348895	plot ailMel1
024	2012	allMis1	GCF_000281125.1	Allpaths v. R41313; manual scaffolding	1151	83	273934		1	74939	999, 1, JH739280:136433-138431	plot allMis1
025	2013	allSin1	GCF_000455745.1	SOAPdenovo v. 1.05	95	125	26114		2265	261774	69, 10, KE696011:2095494-2095641	plot allSin1
026	2013	amaVit1	GCA_000332375.1	Ray software v. 3	10099	81	1392334		172	2756641	492, 13, KB238901:2710-3706	plot amaVit1
027	2013	anaPla1	GCF_000355885.1	SOAPdenovo Release v. 1.03	31	251	10663		1660	94318	99, 1, KB742632:907264-907462	plot anaPla1
028	2014	ancCey1	GCA_000688135.1	Velvet v. 1.2.05; BGI GapCloser v. 1.12 (release_2011); HaploMerger v. 20111230; ERANGE v. 3.2	805	154	171926		1	85569	981, 1, JARK01000206v1:43215-45177	plot ancCey1
029	2014	angJap1	GCA_000470695.1	CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta	4539	91	477038		1	610535	588, 1, KI304555:142639-143815	plot angJap1
030	2007	anoCar1	tbd	tbd	20	383.5	8167		537.5	23338	965, 100, scaffold_84:3853690-3855719	plot anoCar1
031	2010	anoCar2	GCF_000090745.1	Arachne v. 3.0.0	25	240	6694		258	26105	318, 100, chr4:54548520-54549255	plot anoCar2
032	2003	anoGam1	tbd	tbd	7	528	3139		1000	21041	1000, 384, chr2L:5019927-5022310	plot anoGam1
033	2013	apaSpi1	GCA_000385615.1	SOAPdenovo v. 1.0.5	607	61	34340		100	56961	86, 10, KB929338:2579176-2579357	plot apaSpi1
035	2004	apiMel1	tbd	tbd	216	50	12150		10	24454	64, 1, Group14.17:517485-517613	plot apiMel1
036	2005	apiMel2	tbd	tbd	133	50	7371		50	19757	168, 50, Group4:4855105-4855490	plot apiMel2
037	2005	apiMel3	tbd	tbd	199	62	16045		50	27354	198, 50, Group15:1672512-1672957	plot apiMel3
038	2010	apiMel4	GCF_000002195.4	Atlas assembly system v. before 2011	226	52.5	13378		50	24561	167, 50, Group14:1674117-1674500	plot apiMel4
039	2008	aplCal1	tbd	tbd	25	77	3383		100	16863	390, 100, scaffold_1802:24095-24974	plot aplCal1
040	2014	aptFor1	GCF_000699145.1	SOAPdenovo v. 1.6	109	147	26798		1575	323838	779, 98, KL225582:135043-136698	plot aptFor1
041	2015	aptMan1	GCF_001039765.1	tbd	15742	124	4653010		1	3331011	1000, 1, NW_013987125v1:2508272-2510272	plot aptMan1
042	2014	aquChr1	GCA_000696035.1	ABySS v. 1.3.6	4592	43	201248		65	16118238	65, 1, KK850461:8872-9002	plot aquChr1
043	2014	aquChr2	GCA_000766835.1	AllPaths-LG v. August 2013	326	82.5	31349		1	143600	1000, 1, KN265664v1:16826772-16828772	plot aquChr2
044	2013	araMac1	GCA_000400695.1	CLC Genomics Workbench v. 4.9	120	48.5	7929		33	27135	241, 2, KE047968:4314-4797	plot araMac1
045	1880	araTha1	GCF_000001735.3	tbd	1	289	289		60	60	289, 60, chr3:13855281-13855918	plot araTha1
046	2012	ascSuu1	GCA_000298755.1	SOAPdenovo v. 1.04	9	404	3688		555	6481	1000, 247, JH879107v1:69728-71974	plot ascSuu1
047	2013	astMex1	GCF_000372685.1	AllPathsLG v. Jan-2013	1385	78	137888		100	1964877	647, 1, KB872443:19678-20972	plot astMex1
048	2013	balAcu1	GCF_000493695.1	SOAPdenovo v. 16-Mar-2012	211	149	57860		821	371511	926, 15, KI537556:2252563-2254429	plot balAcu1
049	2014	balPav1	GCA_000709895.1	SOAPdenovo v. 1.6	5	270	1303		216	1098	391, 46, KL482982:8685-9512	plot balPav1
050	2014	bisBis1	GCA_000754665.1	MaSuRCA v. 2.1.0	8184	72	712109		100	947641	933, 100, KN265089v1:519297-521262	plot bisBis1
052	2011	bosMut1	GCA_000298355.1	SOAPdenovo v. 1.14	139	83	27917		1274	256420	71, 14, JH880933:479978-480133	plot bosMut1
053	2004	bosTau1	tbd	tbd	6550	40	289123		50	609155	200, 50, SCAFFOLD51732:9156-9605	plot bosTau1
054	2005	bosTau2	tbd	tbd	4361	105	564259		50	2525381	997, 50, scaffold4383:34413-36456	plot bosTau2
055	2006	bosTau3	tbd	tbd	411	51	38673		50	270212	1000, 50, chr10:68862764-68864813	plot bosTau3
056	2007	bosTau4	tbd	tbd	437	53	52814		50	376407	1000, 50, chr10:75537624-75539673	plot bosTau4
057	2009	bosTau5	tbd	tbd	435	53	51742		50	376650	1000, 50, chr10:75464684-75466733	plot bosTau5
058	2009	bosTau6	GCF_000003055.5	UMD Overlapper v. 2009; additional processing	789	670	463109		100	87080	923, 1, chr22:31476636-31478482	plot bosTau6
059	2011	bosTau7	tbd	tbd	413	55	39706		50	141131	1000, 50, chr10:75201034-75203083	plot bosTau7
060	2014	bosTau8	GCF_000003055.5	UMD Overlapper v. 2009; additional processing	789	670	463109		100	87080	923, 1, chr22:31476636-31478482	plot bosTau8
061	2009	bosTauMd3	tbd	tbd	789	670	463109		100	87080	923, 1, chr22:31476636-31478482	plot bosTauMd3
062	2006	braFlo1	tbd	tbd	31	484	14260		417	12668	375, 1, chrUn:879323570-879324320	plot braFlo1
063	2008	braFlo2	tbd	tbd	22	439	8529		411	9064	36, 1, Bf_V2_248:1229532-1229604	plot braFlo2
064	1880	braRap1	GCF_000309985.1	SOAPdenovo v. 1.04	12	104	3193		2810	47557	587, 472, chrUn_JH977260:73788-75433	plot braRap1
065	2007	bruMal1	tbd	tbd	55	50	6093		1	18780	87, 1, Bmal_supercontig14387:293-467	plot bruMal1
066	2014	bruMal2	tbd	tbd	46	124.5	12221		431.5	63506	1000, 20, Bmal_v3_scaffold83:22898-24917	plot bruMal2
067	2013	bubBub1	GCF_000471725.1	MaSuRCA v. 1.8.3	2383	163	395268		100	251657	990, 100, KI418684:2409965-2412044	plot bubBub1
068	2014	bucRhi1	GCF_000710305.1	SOAPdenovo v. 1.6	31	114	5089		78	3263	327, 10, KL526600:8925-9588	plot bucRhi1
070	2011	burXyl1	tbd	tbd	65	601	33110		301	19553	977, 300, scaffold00460:102617-104870	plot burXyl1
071	2010	caeAng1	GCA_000165025.1	Velvet v. 0.7.56	414	41	16726		2	1802	46, 2, scafRNAPATH105:2285-2378	plot caeAng1
072	2012	caeAng2	tbd	tbd	461	46	19505		2	1495	46, 2, Cang_2012_03_13_00008:384957-385050	plot caeAng2
073	2008	caeJap1	tbd	tbd	135	58	10431		186	27893	687, 10, chrUn:37794313-37795696	plot caeJap1
074	2009	caeJap2	tbd	tbd	765	103	130030		1018	891958	707, 10, chrUn:150512438-150513861	plot caeJap2
075	1880	caeJap2a	tbd	tbd	764	103	129273		1018	890958	707, 10, Cjap_Contig4853:3969-5392	plot caeJap2a
077	2010	caeJap4	GCA_000147155.1	Celera assembler v. 6.0	16	98.5	3188		20	1468	1000, 20, Scaffold17129:65445-67464	plot caeJap4
078	2007	caePb1	tbd	tbd	115	44	9160		164	37674	476, 10, chrUn:52430125-52431086	plot caePb1
079	2008	caePb2	tbd	tbd	83	37	3814		222	63681	230, 10, chrUn:74484521-74484990	plot caePb2
080	2010	caePb3	GCA_000143925.2	PCAP v. 9/3/04	89	37	4915		222	74680	230, 10, Scfld02_75:384084-384553	plot caePb3
081	2005	caeRem1	tbd	tbd	58	96	10213		133.5	11238	678, 10, SuperCont3:723391-724756	plot caeRem1
082	2006	caeRem2	tbd	tbd	58	96	10213		133.5	11238	678, 10, chrUn:13919319-13920684	plot caeRem2
083	2007	caeRem3	tbd	tbd	46	50	5760		197.5	14178	460, 10, chrUn:27560772-27561701	plot caeRem3
084	2007	caeRem4	GCF_000149515.1	tbd	46	50	5760		197.5	14178	460, 10, Crem_Contig253:25277-26206	plot caeRem4
085	2010	caeSp111	GCA_000186765.1	Celera assembler v. 6.0	4	194.5	760		20	80	333, 20, Scaffold629:32984714-32985399	plot caeSp111
086	2012	caeSp51	tbd	tbd	14	34	730		12.5	894	201, 3, Csp5_scaffold_09411:792-1196	plot caeSp51
087	2010	caeSp71	tbd	tbd	535	47	30250		213	312209	162, 20, Scaffold11:29462-29805	plot caeSp71
088	2010	caeSp91	tbd	tbd	26	217.5	7172		8745	180575	1000, 20, Scaffold7498:303469-305488	plot caeSp91
089	2014	calAnn1	GCF_000699085.1	SOAPdenovo v. 1.6	89	127	16337		1006	168943	440, 38, KL218155:301090-302007	plot calAnn1
090	2007	calJac1	tbd	tbd	1597	42	129367		182	377725	937, 10, Contig4771:110891-112774	plot calJac1
091	2009	calJac3	GCF_000004665.1	PCAP v. 2009	1516	43	116646		183.5	452860	807, 10, chr3:111956760-111958383	plot calJac3
092	2013	calMil1	GCF_000165045.1	Celera v. 6.1	31	123	8335		100	70257	1000, 100, KI635945:3331497-3333596	plot calMil1
093	2011	camFer1	GCF_000311805.1	SOAPdenovo v. V1.05	11	205	2059		129	2031	237, 2, KB018701:319294-319769	plot camFer1
094	2004	canFam1	tbd	tbd	12	153	2669		210.5	8118	104, 1, chr18:45376349-45376557	plot canFam1
095	2005	canFam2	tbd	tbd	32	199.5	8095		1	5245	746, 1, chrUn:76334072-76335564	plot canFam2
096	2011	canFam3	GCF_000002285.3	Arachne v. April 2010	34	175.5	8234		10	4545	746, 10, chrUn_JH374132:3424-4925	plot canFam3
099	2014	capCar1	GCF_000700745.1	SOAPdenovo v. 1.6	4	105	618		48	354	139, 26, KL359104:23556-23859	plot capCar1
100	2012	capHir1	GCF_000317765.1	SOAPdenovo v. 1.03	627	41	71810		100	546475	988, 16, chr16:40339512-40341503	plot capHir1
101	2014	carCri1	GCF_000690535.1	SOAPdenovo v. 1.6	4	161	644		210.5	878	52, 13, KK509558:67998-68114	plot carCri1
102	2005	cavPor2	tbd	tbd	393	427	164744		100	166667	986, 100, scaffold_291164:123135-125206	plot cavPor2
103	2008	cavPor3	GCF_000151735.1	unknown v. before 2008	3	145	552		100	961	313, 100, scaffold_799:9280-10005	plot cavPor3
104	2002	cb1	tbd	tbd	81	163	20408		145	39126	645, 10, chrUn:51532611-51533910	plot cb1
105	2005	cb2	tbd	tbd	86	153	21033		163.5	42461	645, 10, chrI:9244132-9245431	plot cb2
106	2007	cb3	tbd	tbd	80	148.5	19176		166.5	39580	645, 10, chrI:9355978-9357277	plot cb3
107	2011	cb4	tbd	tbd	86	153	20969		151.5	40114	645, 10, chrI:11247250-11248549	plot cb4
118	2012	cerSim1	GCF_000283155.1	ALLPATHS v. R41370	1818	68	129697		100	270005	815, 100, JH767775:6384924-6386653	plot cerSim1
119	2014	chaVoc1	GCF_000708025.1	SOAPdenovo v. 1.6	47	200	13700		1514	133699	780, 257, KL409415:13594818-13596634	plot chaVoc1
120	2014	chaVoc2	GCF_000708025.1	SOAPdenovo v. 1.6	47	200	13700		1514	133699	780, 257, KL873469:13594818-13596634	plot chaVoc2
121	2013	cheMyd1	GCF_000344595.1	SOAPdenovo v. 1.05	129	204	37111		798	277853	314, 27, KB535131:1778822-1779476	plot cheMyd1
122	2012	chiLan1	GCA_000276665.1	ALLPATHS v. R40776	1183	70	101029		100	267937	996, 100, JH721987:2542897-2544988	plot chiLan1
123	2013	chlSab1	tbd	tbd	23634	81	2123928		10	396229	923, 1, chrX:117110178-117112024	plot chlSab1
124	2014	chlSab2	GCF_000409795.2	ALLPATHS and Newbler v. 13-Feb-2013	23631	81	2123656		10	396199	923, 1, chrX:117110178-117112024	plot chlSab2
125	2014	chlUnd1	GCF_000695195.1	SOAPdenovo v. 1.6	5	293	1223		129	617	310, 65, KK747264:28313-28997	plot chlUnd1
126	2008	choHof1	GCA_000164785.1	tbd	104	54.5	14520		145.5	33892	986, 100, scaffold_56240:3133-5204	plot choHof1
127	2012	chrAsi1	GCF_000296735.1	allpaths v. R42316 HAPLOIDIFY=True	3416	76	339291		100	720504	991, 100, JH823765:402000-404081	plot chrAsi1
128	2011	chrPic1	tbd	tbd	7555	79	738667		50	1230115	64, 1, JH584466:5301285-5301413	plot chrPic1
129	2014	chrPic2	GCA_000241765.2	Newbler v. 2.6	6315	77	629230		206	2593694	1000, 10, chrUn_KK083066v1:1300793-1302802	plot chrPic2
130	2002	ci1	GCA_000183065.1	tbd	28	311.5	8955		50	11060	833, 50, Scaffold_7:289989-291704	plot ci1
131	2005	ci2	tbd	tbd	2	472.5	945		173	346	843, 296, scaffold_403:40134-42115	plot ci2
132	2011	ci3	GCF_000224145.1	tbd	22	258.5	6455		50	9493	597, 50, chrUn_NW_004190451v1:5050-6293	plot ci3
133	2003	cioSav1	tbd	tbd	8	124	1554		100	2755	296, 100, ps_146:263977-264668	plot cioSav1
134	2005	cioSav2	tbd	tbd	6	402.5	2394		200	1668	636, 10, reftig_72:2536022-2537303	plot cioSav2
135	2015	colAng1	GCF_000951035.1	AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2	5690	77	626146		50	1472786	996, 50, NW_012119888v1:35718-37759	plot colAng1
136	2013	colLiv1	GCF_000337935.1	SOAPdenovo v. 2.0	19	116	3824		1290	32865	33, 57, KB379196:2050-2172	plot colLiv1
137	2014	colStr1	GCF_000690715.1	SOAPdenovo v. 1.6	5	161	910		308	1203	362, 113, KK530485:3407-4243	plot colStr1
138	2012	conCri1	GCF_000260355.1	AllPaths v. 2012	1110	72	108033		100	233431	924, 100, JH655880:49229854-49231801	plot conCri1
139	2014	corBra1	GCF_000691975.1	SOAPdenovo v. 1.6	41	90	7520		1445	112176	259, 28, KK718436:193091-193636	plot corBra1
140	2014	corCor1	GCF_000738735.1	AllPaths v. Allpaths-LG version 41687	21	81	2189		1027	27602	81, 1, KL997637:955359-955521	plot corCor1
141	2013	cotJap1	GCA_000511605.1	Soapdenovo v. 1.0.5b; bwa v. 0.5.9; SSPACE v. 1.2	1122	33	38101		68	67651	214, 1, DF262918:84572-85000	plot cotJap1
142	2013	criGri1	GCF_000419365.1	SOAPdenovo v. 2.2	588	217	196516		1481.5	1359815	422, 10, KE379019:554914-555767	plot criGri1
143	2011	criGriChoV1	GCF_000223135.1	SOAPdenovo v. 1.05	213	162	53736		1526	472877	369, 10, NW_003615838v1:158557-159304	plot criGriChoV1
144	2014	cucCan1	GCF_000709325.1	SOAPdenovo v. 1.6	113	242	41656		972	203191	961, 69, KL448150:311854-313844	plot cucCan1
145	2014	cynSem1	GCF_000523025.1	SOAPdenovo v. April-2011	78	311.5	27891		935.5	165198	568, 38, chr11:13981930-13983103	plot cynSem1
146	2014	cypVar1	GCA_000732505.1	AllPaths v. May 2014	3240	89	423504		1	2210432	1000, 1, KL653732:89449-91449	plot cypVar1
147	2003	danRer1	tbd	tbd	1280	57	186413		10	322061	1000, 10, chr25:16217228-16219237	plot danRer1
148	2014	danRer10	GCF_000002035.5	tbd	575	174	105525		10	17550	484, 10, chr5:1032421-1033398	plot danRer10
149	2004	danRer2	tbd	tbd	1150	58	191859		10	223764	1000, 10, chr10:26174984-26176993	plot danRer2
150	2005	danRer3	tbd	tbd	819	58	88143		10	121196	776, 10, chrUn:112388525-112390086	plot danRer3
151	2006	danRer4	tbd	tbd	726	65.5	121967		14	135012	705, 11, chr25:30060270-30061690	plot danRer4
152	2007	danRer5	tbd	tbd	1559	170	288298		100	155702	73, 1, chr21:35548773-35548919	plot danRer5
153	2008	danRer6	tbd	tbd	1421	133	225674		100	142101	1000, 100, Zv8_scaffold431:54613-56712	plot danRer6
154	2010	danRer7	GCF_000002035.4	tbd	1245	164	217595		100	124500	900, 100, chr22:2241720-2243619	plot danRer7
155	2005	dasNov1	tbd	tbd	55	123	12971		111	31368	681, 100, scaffold_3005:3743-5204	plot dasNov1
156	2008	dasNov2	tbd	tbd	109	136	25865		100	58752	836, 100, scaffold_3394:70496-72267	plot dasNov2
157	2011	dasNov3	GCF_000208655.1	Celera Assembler v. 6.0; Atlas-Link; Atlas-Gap-Fill	239	46	16270		50	94236	677, 50, JH564516:24848-26251	plot dasNov3
158	2014	dicLab1	GCA_000689215.1	tbd	275	423	116519		203	134149	994, 20, HG916850:2956140-2958147	plot dicLab1
159	2008	dipOrd1	GCA_000151885.1	tbd	219	46	46012		379	102683	1000, 100, scaffold_2463:9467-11566	plot dipOrd1
160	2013	dirImm1	tbd	tbd	505	175	132528		2	32073	999, 1, nDi_2_2_scaf00035:47420-49418	plot dirImm1
161	2003	dm1	tbd	tbd	9	252	2984		20	1237	604, 20, chrU:5250525-5251752	plot dm1
162	2004	dm2	tbd	tbd	8	362	2818		20	1217	604, 20, chrU:5250525-5251752	plot dm2
163	2006	dm3	tbd	tbd	20	286	4907		100	423940	276, 20, chrU:4943122-4943693	plot dm3
164	2014	dm6	GCF_000001215.4	tbd	15	333	4828		100	1340	276, 20, chrUn_DS483709v1:12934-13505	plot dm6
165	2003	dp2	tbd	tbd	113	64	11633		10	9049	784, 10, Contig4969_Contig4496:202614-204191	plot dp2
166	2004	dp3	tbd	tbd	136	79.5	17354		79.5	14988	485, 11, chrU:7044759-7045739	plot dp3
167	2006	dp4	tbd	tbd	183	81	19720		50	18528	798, 50, chrXL_group1e:8376310-8377955	plot dp4
168	2012	droAlb1	GCA_000298335.1	SOAPdenovo v. 1.04	4360	30	131320		22	152454	76, 1, JH853217:889-1041	plot droAlb1
169	2004	droAna1	tbd	tbd	103	252	28853		100	10300	943, 100, 2448822:95133-97118	plot droAna1
170	2005	droAna2	tbd	tbd	32	160	7905		701	72786	791, 25, scaffold_13266:420335-421941	plot droAna2
171	2006	droAna3	GCF_000005115.1	tbd	35	143	8663		671	75001	707, 25, scaffold_13230:483470-484908	plot droAna3
172	2013	droBia2	GCA_000233415.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	14	116.5	2103		20	294	447, 20, KB462730:148150-149063	plot droBia2
173	2013	droBip2	GCA_000236285.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0	26	103.5	3925		20	520	409, 20, KB464242:790791-791628	plot droBip2
174	2013	droEle2	GCA_000224195.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	22	205	4879		20	440	480, 20, KB458480:1051747-1052726	plot droEle2
175	2005	droEre1	tbd	tbd	8	86.5	1545		731	6855	773, 25, scaffold_4784:23686196-23687766	plot droEre1
176	2006	droEre2	GCF_000005135.1	tbd	14	221	4384		239	7433	763, 25, scaffold_4784:18133045-18134595	plot droEre2
177	2013	droEug2	GCA_000236325.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	17	52	1627		20	237	72, 1, AFPQ02002129:815-959	plot droEug2
178	2013	droFic2	GCA_000220665.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	11	352	3277		20	220	424, 20, KB457328:1582-2449	plot droFic2
179	2005	droGri1	tbd	tbd	17	76	2908		444	11143	734, 312, scaffold_24659:1579-3358	plot droGri1
180	2006	droGri2	GCF_000005155.2	tbd	48	60.5	5904		430.5	52107	774, 25, scaffold_15245:16809148-16810720	plot droGri2
181	2013	droKik2	GCA_000224215.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	12	102	1812		20	1721	361, 20, KB458730:24774-25515	plot droKik2
182	2013	droMir2	GCA_000269505.2	Newbler v. 2.6	122	72	16465		10	57520	1000, 10, chr2:9770771-9772780	plot droMir2
184	2005	droMoj2	tbd	tbd	22	219.5	7748		366.5	30847	969, 25, scaffold_6496:4573125-4575087	plot droMoj2
185	2006	droMoj3	GCF_000005175.2	tbd	16	343	6118		426	29359	859, 25, scaffold_6496:14181729-14183471	plot droMoj3
186	2005	droPer1	GCF_000005195.2	tbd	28	402	10502		100	10914	937, 100, super_12:105769-107742	plot droPer1
187	2013	droPse3	GCF_000001765.3	PBJelly v. 12.8.2; Atlas genome assembly	12	51	1309		86	3307	718, 50, chr3:13529933-13531418	plot droPse3
188	2013	droRho2	GCA_000236305.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	35	167	7228		20	1286	454, 20, KB451407:7018-7945	plot droRho2
189	2005	droSec1	GCA_000005215.1	tbd	17	399	6822		100	5318	765, 100, super_59:77146-78775	plot droSec1
190	2005	droSim1	tbd	tbd	109	106	23001		298	40703	801, 10, chr2L:4623692-4625303	plot droSim1
191	2014	droSim2	GCF_000754195.2	Velvet v. 1.1.04	104	58	5999		10	1818	359, 8, chr2R:7425888-7426613	plot droSim2
192	2013	droSuz1	GCA_000472105.1	SOAPdenovo v. 2	71	185	16489		1565	196054	364, 76, KI420423:11753-12556	plot droSuz1
193	2013	droTak2	GCA_000224235.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	13	102	2070		20	260	472, 20, KB461286:709634-710597	plot droTak2
194	2004	droVir1	tbd	tbd	48	328.5	15839		25	16648	698, 25, scaffold_10:2740496-2741916	plot droVir1
195	2005	droVir2	tbd	tbd	13	232	3421		1415	46365	503, 25, scaffold_13324:149342-150372	plot droVir2
196	2006	droVir3	GCF_000005245.1	tbd	12	341	4206		1536.5	45200	423, 25, scaffold_13324:149231-150101	plot droVir3
197	2006	droWil1	GCF_000005925.1	tbd	23	248	8712		1330	51159	759, 50, scaffold_181150:697726-699293	plot droWil1
198	2006	droWil2	GCF_000005925.1	tbd	23	248	8712		1330	51159	759, 50, CH964291:697726-699293	plot droWil2
199	2004	droYak1	tbd	tbd	65	340	25549		250	24358	955, 50, chrU:40768288-40770247	plot droYak1
200	2005	droYak2	tbd	tbd	99	170	26922		54	37713	684, 10, chr2L:22155365-22156742	plot droYak2
201	2006	droYak3	GCF_000005975.2	tbd	85	143	20479		10	23713	684, 10, chr2L:22155365-22156742	plot droYak3
204	2005	echTel1	tbd	tbd	89	83	17114		100	22024	805, 100, scaffold_272928:13200-14909	plot echTel1
205	2012	echTel2	GCF_000313985.1	ALLPATHS v. R37599	3871	93	620444		100	656358	998, 100, JH980317:1376657-1378752	plot echTel2
206	2014	egrGar1	GCF_000687185.1	SOAPdenovo v. 1.6	112	213.5	33121		1093.5	229589	998, 134, KK502338:445846-447975	plot egrGar1
207	2013	eidHel1	GCA_000465285.1	CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05	27	45	1294		1	186	68, 1, KE769079:2720-2856	plot eidHel1
208	2012	eleEdw1	GCF_000299155.1	allpaths v. R42301 HAPLOIDIFY=True	1643	71	141553		100	311199	1000, 100, JH947463:2106240-2108339	plot eleEdw1
209	2012	eptFus1	GCF_000308155.1	ALLPATHS v. R40371	1641	75	188916		100	378407	988, 100, JH977647:11513546-11515621	plot eptFus1
210	2007	equCab1	tbd	tbd	17	457	5982		100	6200	715, 100, chr2:10720193-10721722	plot equCab1
211	2007	equCab2	tbd	tbd	4	160.5	610		1909	18507	258, 295, chr22:17653073-17653883	plot equCab2
212	2014	equPrz1	GCA_000696695.1	SOAPdenovo v. 1.05	39	49	5163		49	12408	78, 11, KK955445:38997-39163	plot equPrz1
213	2006	eriEur1	tbd	tbd	343	435	146738		100	209198	1000, 100, scaffold_366352:52823-54922	plot eriEur1
214	2012	eriEur2	GCF_000296755.1	allpaths v. R41008	3596	70	265454		100	1205265	1000, 100, JH835375:3514396-3516495	plot eriEur2
215	2014	esoLuc1	GCA_000721915.1	AllPaths v. 43500	9785	81	734131		15	1227519	950, 10, LG19:14032217-14034126	plot esoLuc1
217	2014	eurHel1	GCF_000690775.1	SOAPdenovo v. 1.6	2	89.5	179		436	872	113, 451, KK569808:53808-54484	plot eurHel1
219	2013	falChe1	GCF_000337975.1	SOAPdenovo v. 1.4	27	206	7614		685	35918	51, 10, KB397780:7020361-7020472	plot falChe1
220	2013	falPer1	GCF_000337955.1	SOAPdenovo v. 1.4	6	48.5	530		631.5	4836	36, 10, KB391040:3398436-3398517	plot falPer1
221	1880	felCat1	tbd	tbd	1343	353	504058		874	2708782	1000, 100, scaffold_217423:45453-47552	plot felCat1
222	2006	felCat3	tbd	tbd	1343	353	504058		874	2708782	1000, 100, scaffold_217423:45453-47552	plot felCat3
223	2008	felCat4	GCA_000003115.1	tbd	9736	503	4582767		10	9398414	1000, 10, chrA2:8725380-8727389	plot felCat4
224	2011	felCat5	GCF_000181335.1	Celera Assembler v. 6.1	27	72	6437		20	100569	488, 20, chrB2:22462351-22463346	plot felCat5
225	2014	felCat8	GCF_000181335.2	CABOG v. 6.2; MaSuRCA assembler v. 8.0; GAA v. 1.0	630	55	50300		10	89447	895, 14, chrB3:27250577-27252380	plot felCat8
226	2013	ficAlb2	GCF_000247815.1	SOAPdenovo v. 1.05	632	77	75592		40.5	206854	982, 1, chr7:28154426-28156390	plot ficAlb2
227	2002	fr1	tbd	tbd	76	155.5	19306		50	16684	71, 1, chrUn:149577204-149577346	plot fr1
228	2004	fr2	tbd	tbd	5	313	1682		512	2231	47, 1, chrUn:336404518-336404612	plot fr2
229	2011	fr3	GCF_000180615.1	tbd	6	229	1827		286	2291	47, 1, HE592038:5063-5157	plot fr3
230	2014	fulGla1	GCF_000690835.1	SOAPdenovo v. 1.6	8	336.5	2583		103.5	1637	450, 20, KK597768:8602-9521	plot fulGla1
231	2010	gadMor1	GCA_000231765.1	tbd	168	53	11363		270	70748	51, 1, CAEA01526699:46-148	plot gadMor1
232	2004	galGal2	tbd	tbd	114	40	12930		124	17674	778, 21, chr3:68417113-68418689	plot galGal2
233	2006	galGal3	tbd	tbd	729	37	34199		500	325853	479, 10, chrUn_random:55035794-55036761	plot galGal3
234	2011	galGal4	GCF_000002315.3	Celera Assembler v. 5.4	55	401	22946		100	31537	805, 100, chr19:3903221-3904930	plot galGal4
235	2015	galGal5	GCF_000002315.4	MHAP/PBcR v. 8.2beta	1	33	33		795	795	33, 795, chrUn_NT_465606v1:9086-9946	plot galGal5
236	2014	galVar1	GCF_000696425.1	SOAPdenovo2 v. April 2014	58964	61	5626241		419	24866346	997, 1, NW_007727116v1:311725-313719	plot galVar1
237	2006	gasAcu1	tbd	tbd	8	46.5	1970		117.5	2520	841, 100, chrUn:38727446-38729227	plot gasAcu1
239	2009	gavGan0	tbd	tbd	30236	134	5187944		5000	145799649	915, 10, scaffold24725:12789-14628	plot gavGan0
240	2014	gavSte1	GCF_000690875.1	SOAPdenovo v. 1.6	5	164	848		318	2312	269, 245, KK640233:828-1610	plot gavSte1
241	2012	geoFor1	GCF_000277835.1	SOAPdenovo v. 2.01	32	105.5	4877		945.5	51025	617, 11, JH739922:1318693-1319937	plot geoFor1
243	2009	gorGor2	tbd	tbd	6585	247	2365617		10	499615	1000, 10, chr10_101645027_418909:206049-208058	plot gorGor2
244	2011	gorGor3	GCF_000151905.1	tbd	6926	246	2475426		10	533805	1000, 10, chr10:101539188-101541197	plot gorGor3
245	2014	gorGor4	GCA_000151905.3	tbd	8691	94	1514940		25	982883	246, 1, chr9:24397320-24397812	plot gorGor4
247	2009	haeCon1	tbd	tbd	25	39	1031		10	1745	58, 10, Hcon_Contig0056815:13389-13514	plot haeCon1
248	2013	haeCon2	tbd	tbd	5378	149	831727		55	351011	700, 1, scaffold_63:260903-262303	plot haeCon2
249	2014	halAlb1	GCF_000691405.1	SOAPdenovo v. 1.6	11	126	1936		370	3807	466, 102, KK641449:26277-27310	plot halAlb1
250	2014	halLeu1	GCF_000737465.1	SOAPdenovo2 v. May 2014	14	280	4342		95	1676	194, 10, KL869356:8708537-8708934	plot halLeu1
251	2011	hapBur1	GCF_000239415.1	ALLPATHS-LG v. R35951	965	95	135908		20	374038	975, 20, JH425754:7557-9526	plot hapBur1
252	2011	hetBac1	GCA_000223415.1	Celera assembler v. 6.0	3	228	1282		20	60	1000, 20, GL996479v1:885362-887381	plot hetBac1
253	2011	hetGla1	tbd	tbd	743	313	285174		1994	2914751	785, 43, JH165660:4306-5918	plot hetGla1
254	2012	hetGla2	GCF_000247695.1	AllPaths v. R39605	595	70	44604		100	201552	1000, 100, JH602085:17402968-17405067	plot hetGla2
255	2009	hg19	tbd	tbd	1	200	200		3000000	3000000	200, 3000000, chrY:10104354-13104753	plot hg19
256	2013	hg38	GCF_000001405.26	tbd	12	78	974		440	56689	125, 20, chrUn_KI270442v1:175618-175887	plot hg38
259	2012	jacJac1	GCF_000280705.1	ALLPATHS v. R41689 HAPLOIDIFY=True	2666	63	196366		100	569918	1000, 100, JH725440:52488719-52490818	plot jacJac1
260	2011	latCha1	GCF_000225785.1	AllPaths v. R36819	2038	77	159059		100	504858	955, 100, JH127253:476850-478859	plot latCha1
262	2014	lepDis1	GCF_000691785.1	SOAPdenovo v. 1.6	1	50	50		229	229	50, 229, KK681583:9399-9727	plot lepDis1
263	2011	lepOcu1	GCF_000242695.1	AllPaths v. R38293	2079	95	232474		100	466733	1000, 100, chrLG4:37780111-37782210	plot lepOcu1
264	2013	lepWed1	GCF_000349705.1	allpaths v. R41856 HAPLOIDIFY=True	2022	63	135843		100	1218867	1000, 100, KB715312:1023296-1025395	plot lepWed1
265	2013	letCam1	GCA_000466285.1	Newbler v. 2.7	1453	69	123952		100	739039	280, 39, KE994354:70338-70936	plot letCam1
266	1880	linHum0	GCF_000217595.1	CABOG v. 5.3	179	48	10176		100	20986	480, 100, NW_012159984:28893-29952	plot linHum0
267	2013	lipVex1	GCF_000442215.1	SOAPdenovo v. 2.01	292	92	66483		985.5	386576	876, 10, KE557659:158624-160385	plot lipVex1
268	2012	loaLoa1	GCA_000183805.3	Newbler v. 2.1-PreRelease-4/28/2009	376	382	123384		215	94547	604, 20, JH712068v1:803529-804756	plot loaLoa1
269	2005	loxAfr1	tbd	tbd	79	44	11426		206	80801	687, 284, scaffold_10531:71539-73196	plot loxAfr1
270	2008	loxAfr2	tbd	tbd	78	165.5	20735		1078	180887	989, 100, scaffold_3386:17920-19997	plot loxAfr2
271	2009	loxAfr3	GCF_000001905.1	tbd	11	45	1924		398	9784	731, 100, scaffold_211:333226-334787	plot loxAfr3
272	2007	macEug1	tbd	tbd	7319	57	504656		10	562759	146, 1, Scaffold27901:25044-25336	plot macEug1
273	2009	macEug2	GCA_000004035.1	tbd	11689	55	752361		50	1102638	146, 1, GL058785:13153-13445	plot macEug2
274	2013	macFas5	GCF_000364345.1	SOAPdenovo v. 1.0.5, SRPRISM v. 2.4; ARGO v. 0.1	1138	106.5	145024		204.5	1039415	849, 10, chr14:81860376-81862083	plot macFas5
275	2015	macNem1	GCF_000956065.1	AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2; PBJelly2 v. 14.9.9	1828	95	237662		50	834836	982, 25, NW_012016132v1:18826350-18828338	plot macNem1
276	2014	manPen1	GCA_000738955.1	SOAPdenovo v. May 2014	37129	101	5536376		1	13090743	1000, 1, KN006700:349054-351054	plot manPen1
277	2014	manVit1	GCF_000692015.1	SOAPdenovo v. 1.6	25	231	8844		1303	65245	701, 296, KK732740:655429-657126	plot manVit1
279	2012	mayZeb1	GCF_000238955.1	AllPaths v. R37043	1831	95	241336		100	682313	1000, 100, JH720538:3252564-3254663	plot mayZeb1
280	2013	megLyr1	GCA_000465345.1	CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05	33	38	1716		1	185	83, 1, KI087181:1999-2165	plot megLyr1
281	2009	melGal1	tbd	tbd	834	127	136229		100	661041	169, 1, chr3:54352580-54352918	plot melGal1
282	2014	melGal5	GCF_000146605.2	MaSuRCA v. 1.9.2	84	181	17431		100	76065	724, 100, chrZ:7873702-7875249	plot melGal5
285	2008	melInc2	tbd	tbd	3	77	211		201	513	98, 201, MiV1ctg3:286050-286446	plot melInc2
286	2011	melUnd1	GCF_000238935.1	Celera v. 6.1	39	89	5925		41	36796	334, 20, JH556232:114057-114744	plot melUnd1
287	2014	merNub1	GCF_000691845.1	SOAPdenovo v. 1.6	2	154.5	309		361	722	245, 311, KK701714:10568-11368	plot merNub1
288	2013	mesAur1	GCF_000349665.1	allpaths v. R44683	3589	71	248381		100	755166	212, 100, KB708269:3930600-3931123	plot mesAur1
289	2014	mesUni1	GCF_000695765.1	SOAPdenovo v. 1.6	4	347	1434		124.5	451	332, 23, KK817080:7082-7768	plot mesUni1
290	1880	micMur0	tbd	tbd	295	256	90483		780	749299	997, 100, GeneScaffold_4747:166512-168605	plot micMur0
291	2007	micMur1	GCA_000165445.1	tbd	124	124.5	33320		952.5	207469	969, 100, scaffold_5185:107104-109141	plot micMur1
292	2015	micMur2	GCF_000165445.1	AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9	774	90	85250		50	267164	999, 25, KQ057470v1:2292330-2294352	plot micMur2
293	2017	micMur3	GCF_000165445.2	AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9; Lachesis v. shendurelab-LACHESIS-2151de9; BioNano IrysSolve v. 2.1	325	95	73918		50	262987	898, 10, chr2:108635511-108637316	plot micMur3
294	2012	micOch1	GCF_000317375.1	allpaths v. R41985 HAPLOIDIFY=True SPRS_WRITE_SEPS=True	6788	65	483435		100	1507707	993, 100, chr6:54381083-54383168	plot micOch1
295	2011	mm10	tbd	tbd	2	390.5	781		25879.5	51759	477, 1759, chrX_GL456233_random:239940-242652	plot mm10
296	1880	mm5	tbd	tbd	204	48.5	30180		100	76884	921, 100, chr6:132460596-132462537	plot mm5
297	2005	mm6	tbd	tbd	117	48	17647		100	48212	768, 100, chr14:100566071-100567706	plot mm6
298	2005	mm7	tbd	tbd	45	48	5475		100	64491	451, 100, chr15:68974498-68975499	plot mm7
299	2006	mm8	tbd	tbd	6	161	1257		162.5	50878	520, 353, chr14:87009574-87010966	plot mm8
300	2007	mm9	tbd	tbd	2	390.5	781		25879.5	51759	477, 1759, chrX_random:239940-242652	plot mm9
301	2004	monDom1	tbd	tbd	18	53.5	1891		127	11341	696, 100, scaffold_14754:178069-179560	plot monDom1
302	2005	monDom2	tbd	tbd	5	428	2012		100	520	870, 100, scaffold_38:23849795-23851634	plot monDom2
303	2006	monDom4	tbd	tbd	9	183	3070		1000	21732	870, 1, chr1:400420041-400421781	plot monDom4
304	2006	monDom5	tbd	tbd	9	183	3070		1000	21732	870, 1, chr1:424248968-424250708	plot monDom5
305	2013	musDom2	GCF_000371365.1	AllPathsLG v. September 2012	1284	85	165577		1	473996	1000, 1, KB855954:134298-136298	plot musDom2
306	2011	musFur1	GCA_000215625.1	ALLPATHS-LG v. R36167	1009	84	107706		44	286510	1000, 20, GL897138:9717-11736	plot musFur1
307	2013	myoBra1	GCF_000412655.1	SOAP de novo v. 2.04	356	119	85889		1109	766318	1000, 31, KE163605:2655193-2657223	plot myoBra1
308	2012	myoDav1	GCF_000327345.1	SOAPdenovo v. 1.06	303	151	56967		1283	942238	502, 19, KB106370:3092722-3093744	plot myoDav1
309	2006	myoLuc1	tbd	tbd	42	47	6392		1551	125787	388, 100, scaffold_150441:136761-137636	plot myoLuc1
310	2010	myoLuc2	GCF_000147115.1	Arachne v. Dev. Jan 2010	7	39	357		410	3363	75, 119, GL429781:8032929-8033197	plot myoLuc2
311	2014	nanGal1	GCF_000622305.1	SOAPdenovo v. 2.04.4	730	126	149781		902.5	980462	740, 12, KL200152:4088120-4089611	plot nanGal1
312	2015	nanPar1	GCA_000935625.1	SOAPdenovo v. 1.06	1716	194	477991		974	2590489	552, 12, KN907832v1:31307-32422	plot nanPar1
313	2014	nasLar1	GCA_000772465.1	phredPhrap v. 1.080812	614	43	93736		7	126885	117, 1, chr1:6190345-6190579	plot nasLar1
314	2013	necAme1	GCF_000507365.1	Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010	459	54	28538		100	92887	366, 100, KI657476v1:37386-38217	plot necAme1
315	2007	nemVec1	tbd	tbd	25	378	10288		829	17106	769, 1, scaffold_3968:6459-7997	plot nemVec1
316	2011	neoBri1	GCF_000239395.1	ALLPATHS-LG v. R36800	5040	95	1321574		20	665865	998, 20, JH422308:3325010-3327025	plot neoBri1
317	2014	nipNip1	GCF_000708225.1	SOAPdenovo v. 1.6	41	154	11937		1090	77358	514, 15, KL411148:2104426-2105468	plot nipNip1
318	2010	nomLeu1	tbd	tbd	859	141	220161		532	1139352	999, 100, GL397299:16863535-16865632	plot nomLeu1
319	2011	nomLeu2	tbd	tbd	859	141	220161		532	1139352	999, 100, GL397299:16863535-16865632	plot nomLeu2
320	2012	nomLeu3	GCA_000146795.3	tbd	861	141	220464		519	1139552	999, 100, chr5:41669854-41671951	plot nomLeu3
321	2014	notCor1	GCF_000735185.1	Celera Assembler v. 7.0	174	91.5	17942		51	21717	407, 1, KL665414:596304-597118	plot notCor1
322	1880	ochPri0	tbd	tbd	569	101	138948		1065	1840608	994, 100, GeneScaffold_4726:276480-278567	plot ochPri0
323	2008	ochPri2	GCA_000164825.1	tbd	313	55	35317		1365	1110261	967, 100, scaffold_3914:61889-63922	plot ochPri2
324	2012	ochPri3	GCF_000292845.1	Allpaths v. R41206	1958	69	148238		100	499781	890, 100, JH802177:1348834-1350713	plot ochPri3
325	2012	octDeg1	GCF_000260255.1	allpaths v. R40507 LITTLE_HELPS_BIG=False	2582	68	231489		100	464548	985, 100, JH651571:12809669-12811738	plot octDeg1
326	2013	odoRosDiv1	GCA_000321225.1	AllPaths v. 41070; Atlas-link v. 1.0; Atlas-gapfill v. 2.2	2581	68	180258		50	263661	970, 50, KB229427:1083192-1085181	plot odoRosDiv1
327	2013	oncVol1	GCA_000499405.1	tbd	10	89.5	2046		1	18211	739, 1, HG738137v1:12037947-12039425	plot oncVol1
328	2014	opiHoa1	GCF_000692075.1	SOAPdenovo v. 1.6	80	170.5	23360		1723.5	216549	855, 28, KK733898:82987-84724	plot opiHoa1
329	2013	orcOrc1	GCF_000331955.2	AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2	2677	66	181922		50	357696	943, 50, NW_004438742v1:126518-128453	plot orcOrc1
330	2011	oreNil1	tbd	tbd	1903	93	208888		20	734264	969, 20, GL831201:3474999-3476956	plot oreNil1
331	2007	ornAna1	GCF_000002275.2	tbd	793	49	70053		103	148119	718, 10, Contig3645:38619-40064	plot ornAna1
332	2007	ornAna2	GCA_000002275.2	tbd	793	49	70053		103	148119	718, 10, chrUn_DS182721v1:38619-40064	plot ornAna2
333	2012	oryAfe1	GCF_000298275.1	allpaths v. R40776 LITTLE_HELPS_BIG=False	3595	65	293465		100	691489	998, 100, JH863829:9451309-9453404	plot oryAfe1
334	2005	oryCun1	tbd	tbd	122	278.5	44566		462.5	91832	978, 100, scaffold_172390:787-2842	plot oryCun1
335	2009	oryCun2	GCF_000003625.3	tbd	12	44.5	836		446	9055	327, 185, chr13:6520795-6521633	plot oryCun2
336	2006	oryLat1	tbd	tbd	141	144	25310		10	215389	561, 10, chrUn:20300712-20301843	plot oryLat1
337	2005	oryLat2	tbd	tbd	141	144	25310		10	253399	445, 10, ultracontig221:437957-438856	plot oryLat2
339	2011	otoGar3	GCF_000181295.1	ALLPATHS-LG v. R35710	3569	86	332700		39	663694	985, 20, GL873641:2218538-2220527	plot otoGar3
340	2010	oviAri1	GCA_000005525.1	tbd	5934	53	394316		37	1966190	264, 1, chr15:8985870-8986398	plot oviAri1
341	2012	oviAri3	GCF_000298735.1	SOAPdenovo v. 1.03	149	193	51933		215	178445	46, 3, chr3:3466521-3466615	plot oviAri3
342	2015	oxyTri2	tbd	tbd	523	37	30028		50	25856	186, 1, chrMACsb310:15510646-15511018	plot oxyTri2
343	2013	panHod1	GCF_000400835.1	SOAPdenovo v. 2.1	321	129	65178		1092	702884	628, 10, KE118776:1218541-1219806	plot panHod1
344	2012	panPan1	GCF_000258655.1	Celera Assembler v. 5.4.3	63	133	11209		20	22114	33, 1, JH650468:842203-842269	plot panPan1
345	2015	panPan2	tbd	tbd	70	160	13388		20	1045522	35, 1, chr4:127787143-127787213	plot panPan2
346	2013	panRed1	GCA_000341325.1	Velvet v. 1.2.07	123	56	6626		10	3069	62, 10, KB454926:42673-42806	plot panRed1
347	2013	panTig1	GCF_000464555.1	SOAPdenovo v. 08-Jul-2011	59	111	12591		700	69429	398, 9, KE721804:6447970-6448774	plot panTig1
348	2003	panTro1	tbd	tbd	5719	388	2244063		100	3504041	998, 100, chr6:137473031-137475126	plot panTro1
349	2006	panTro2	tbd	tbd	692	52	62006		240	238273	717, 10, chr10_random:5205395-5206838	plot panTro2
350	2010	panTro3	tbd	tbd	472	54	44241		238.5	180280	908, 10, chr2B:124438762-124440587	plot panTro3
351	2011	panTro4	GCF_000001515.6	tbd	472	54	44241		238.5	180280	908, 10, chr2B:124438762-124440587	plot panTro4
352	2016	panTro5	GCF_000001515.7	DiscoVar v. 51280; PBJelly v. 14.9.9	2937	199	537385		100	3625772	199, 10, chr12_NW_015974005v1_random:1130-1537	plot panTro5
353	2012	papAnu2	GCF_000264685.1	CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0	727	138	144060		50	96682	46, 1, chr4:20965571-20965663	plot papAnu2
354	2008	papHam1	tbd	tbd	22041	56	1338445		50	2303596	376, 50, scaffold4259:86690-87491	plot papHam1
355	2014	pelCri1	GCF_000687375.1	SOAPdenovo v. 1.6	3	72	517		186	808	386, 173, KK471910:16412-17356	plot pelCri1
356	2011	pelSin1	GCF_000230535.1	SOAPdenovo v. 1.05	126	138	35062		411.5	167243	398, 10, JH212629:287260-288065	plot pelSin1
357	2013	perManBai1	GCF_000500345.1	Newbler v. 2.3 and 2.5; AllPaths v. 41070; ATLAS-gapfill v. 2.2; ATLAS-link v. 1.0	7908	80	846184		50	1552640	1000, 50, KI615759:2266069-2268118	plot perManBai1
358	2007	petMar1	tbd	tbd	542	47	48234		10	42185	746, 10, Contig3178:18125-19626	plot petMar1
359	2010	petMar2	GCA_000148955.1	Arachne v. 3.2	31	86	5681		732	39461	617, 100, GL479790:15647-16980	plot petMar2
360	2014	phaCar1	GCF_000708925.1	SOAPdenovo v. 1.6	2	206	412		79	158	261, 100, KL416242:66648-67269	plot phaCar1
361	2014	phaLep1	GCF_000687285.1	SOAPdenovo v. 1.6	14	179	2930		310	4227	343, 85, KK448216:3226-3996	plot phaLep1
362	2014	phoRub1	GCA_000687265.1	SOAPdenovo v. 1.6	4	288.5	1016		195.5	823	373, 83, KK425162:48893-49721	plot phoRub1
363	2013	phyCat1	GCF_000472045.1	AllPaths-LG v. January 2013	684	82.5	86555		100	130377	1000, 1, KI402232:538054-540054	plot phyCat1
364	2014	picPub1	GCF_000699005.1	SOAPdenovo v. 1.6	59	83	12175		970	106482	111, 28, KL217012:74310-74559	plot picPub1
365	2013	poeFor1	GCF_000485575.1	AllPaths-LG v. July 2013	848	75	84492		1	328834	972, 1, KI520524:847-2791	plot poeFor1
366	2014	poeRet1	tbd	tbd	1124	87	157426		1	421252	988, 1, chrLG12:26078504-26080480	plot poeRet1
367	1880	ponAbe1	tbd	tbd	1528	40	90824		133.5	275853	662, 10, Contig208:1185633-1186966	plot ponAbe1
368	2007	ponAbe2	tbd	tbd	2239	54	444541		100	829820	769, 1, chr11:46659515-46661053	plot ponAbe2
369	2014	priExs1	tbd	tbd	49	121	12100		1773	95166	181, 38, scaffold470:42605-43004	plot priExs1
370	2007	priPac1	tbd	tbd	121	49	10688		209	31254	90, 1, chrUn:114913780-114913960	plot priPac1
372	2014	priPac3	tbd	tbd	168	49.5	13153		274.5	50322	90, 1, Ppa_Contig2432:805-985	plot priPac3
373	2008	proCap1	GCA_000152225.1	Arachne v. before 2009	116	38	5205		534.5	65619	53, 100, scaffold_8867:32393-32598	plot proCap1
374	2013	pseHum1	GCF_000331425.1	SOAPdenovo v. 1.5	775	142	173055		10	547111	1000, 10, KB221227:5459003-5461012	plot pseHum1
375	2012	pteAle1	GCA_000325575.1	SOAPdenovo v. 1.06	97	127	19728		1023	161616	421, 16, KB031157:14150143-14151000	plot pteAle1
376	2014	pteGut1	GCF_000699245.1	SOAPdenovo v. 1.6	1	282	282		720	720	282, 720, KL237369:530-1813	plot pteGut1
377	2013	ptePar1	GCA_000465405.1	CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05	3	31	102		1	3	40, 1, KE827285:1815-1895	plot ptePar1
378	2008	pteVam1	GCA_000151845.1	tbd	68	43.5	9173		301.5	27212	971, 100, scaffold_4327:120126-122167	plot pteVam1
379	2011	punNye1	GCF_000239375.1	ALLPATHS-LG v. R37016	1574	95	242736		20	332782	992, 20, JH419321:67178-69181	plot punNye1
380	2014	pygAde1	GCA_000699105.1	SOAPdenovo v. 1.6	42	113	7740		1160.5	93198	78, 17, KL224983:2418932-2419104	plot pygAde1
381	2013	pytBiv1	GCF_000186305.1	Soap deNovo v. March 2012	21222	101	2315791		99	2845128	649, 10, KE957835:3697-5004	plot pytBiv1
386	2005	rheMac1	tbd	tbd	2816	39	116369		50	214725	205, 50, SCAFFOLD120616:17732-18191	plot rheMac1
387	2010	rheMac3	GCA_000230795.1	SOAPdenovo v. 1.0	288	192.5	71777		1140.5	887215	949, 27, chr15:33329332-33331256	plot rheMac3
388	2015	rheMac8	GCF_000772875.2	MaSuRCA v. 1.8.3; PBJelly2 v. 14.9.9	80	99.5	20122		917	437685	823, 20, chr7:1436259-1437924	plot rheMac8
389	2016	rhiBie1	GCF_001698545.1	Newbler v. 71; Anytag v. 70; GOBOND v. 69; GapCloser v. 1.12	4262	228	1007049		1	2148972	965, 1, NW_016817388v1:689035-690965	plot rhiBie1
390	2013	rhiFer1	GCA_000465495.1	CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05	2	42.5	85		1	2	45, 1, KI143993:8550-8640	plot rhiFer1
391	2014	rhiRox1	GCF_000769185.1	SOAPdenovo v. 2013.04	187	158	50999		529	184770	584, 11, KN296100v1:378785-379963	plot rhiRox1
392	1880	ricCom1	GCF_000151685.1	tbd	41	332	13808		738	38675	787, 3, EQ973819:99412-100988	plot ricCom1
393	2003	rn3	tbd	tbd	574	143	146802		50	425043	72, 1, chr4:1247786-1247930	plot rn3
394	2004	rn4	tbd	tbd	567	141	142452		50	424693	72, 1, chr4:1247786-1247930	plot rn4
395	2012	rn5	tbd	tbd	64	516	32231		50	28921	712, 1, chr3:45275318-45276742	plot rn5
396	2014	rn6	GCF_000001895.5	Atlas Assembly suite v. 2.0; CLCbio v. 1.0; Velvet v. 1.0; PBjelly v. 2.0	719	290	280406		50	1258566	712, 1, chr3:40184108-40185532	plot rn6
401	2011	saiBol1	GCA_000235385.1	AllPaths v. R37830	1541	77	139356		100	303093	1000, 100, JH378136:528784-530883	plot saiBol1
403	2011	sarHar1	GCF_000189315.1	Phusion2 v. 1.0	17494	220	2993318		158	6574378	958, 10, chr1_GL834475_random:882665-884590	plot sarHar1
404	2013	sebNig1	GCA_000475235.1	tbd	168	55.5	11782		54.5	11235	82, 2, KI499294:4621-4786	plot sebNig1
405	2013	sebRub1	GCA_000475215.1	SOAPdenovo v. 1.05	119	55	9711		51	8253	142, 1, KI444651:3586-3870	plot sebRub1
406	2014	serCan1	GCF_000534875.1	tbd	213	97	36640		20	33876	971, 1, HG009242:4536330-4538272	plot serCan1
407	2006	sorAra1	tbd	tbd	229	330	79670		100	75086	895, 100, scaffold_247593:25660-27549	plot sorAra1
408	2008	sorAra2	GCF_000181275.1	Allpaths v. R41070	3389	75	359891		100	822102	992, 100, JH798160:15867029-15869112	plot sorAra2
409	2008	speTri1	tbd	tbd	99	46	12167		879	197520	835, 100, scaffold_1259:158788-160557	plot speTri1
410	2011	speTri2	GCF_000236235.1	ALLPATHS v. R37591	2964	95	353556		100	565083	1000, 100, JH393486:3045059-3047158	plot speTri2
411	2014	stePar1	GCF_000690725.1	ALLPATHS-LG v. August 2013	554	65	47063		1	120402	952, 1, KK580894:321554-323458	plot stePar1
412	1880	strCam0	tbd	tbd	20	243	7267		836.5	40260	184, 13, superscaffold45:7169362-7169742	plot strCam0
413	2014	strCam1	GCF_000698965.1	SOAPdenovo v. 1.6	19	246	7125		759	39346	184, 13, KL206666:4120006-4120386	plot strCam1
414	2005	strPur1	tbd	tbd	1291	153	303896		50	238579	89, 1, Scaffold16400:576-754	plot strPur1
415	2006	strPur2	tbd	tbd	367	55	25281		50	79238	35, 1, Scaffold12735:108654-108724	plot strPur2
416	2009	strPur3	tbd	tbd	989	56	64991		96	187408	35, 1, Scaffold740:110486-110556	plot strPur3
417	2011	strPur4	GCF_000002235.3	Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement	1612	100	326953		50	206009	425, 3, Scaffold112:361603-362455	plot strPur4
419	2014	strRat2	GCA_001040885.1	tbd	2	54.5	109		6	12	67, 1, chrUn_LN609483v1:243-377	plot strRat2
421	2009	susScr1	tbd	tbd	371	43	34151		100	66500	986, 100, chr2:139016697-139018768	plot susScr1
422	2009	susScr2	tbd	tbd	371	43	34151		100	66500	986, 100, chr2:139016697-139018768	plot susScr2
423	1880	taeGut0	tbd	tbd	212	45	20495		442	116920	624, 10, Contig233:50949-52206	plot taeGut0
424	2008	taeGut1	tbd	tbd	223	45	22373		100	22300	689, 100, chr21_random:54357-55834	plot taeGut1
425	2013	taeGut2	GCF_000151805.1	PCAP v. 2008	219	44	21273		100	21900	624, 100, chr27:56676-58023	plot taeGut2
427	2013	takFla1	GCA_000400755.1	HAPs v. 0.2.2	365	241	91817		788	407496	503, 1, KE121297:329-1335	plot takFla1
428	2013	tarIhg38	tbd	tbd	12	78	974		440	56689	125, 20, chrUn_KI270442v1:175618-175887	plot tarIhg38
429	2008	tarSyr1	tbd	tbd	331	70	45530		191	102767	892, 100, scaffold_111889:3660-5543	plot tarSyr1
430	2013	tarSyr2	GCF_000164805.1	Celera v. DEC-2012	189	56	17645		20	9572	1000, 20, KE939253v1:939796-941815	plot tarSyr2
431	2014	tauEry1	GCF_000709365.1	SOAPdenovo v. 1.6	1	50	50		394	394	50, 394, KL466072:20829-21322	plot tauEry1
432	2004	tetNig1	tbd	tbd	64	272.5	21868		1000	53904	336, 59, chr5:807217-807947	plot tetNig1
433	2007	tetNig2	tbd	tbd	70	298	25569		500	32404	336, 59, chr5:799217-799947	plot tetNig2
434	2014	tinGut1	GCF_000705375.1	SOAPdenovo v. 1.6	18	96	3855		1086	21982	519, 68, KL400865:236113-237218	plot tinGut1
435	2014	tinGut2	GCF_000705375.1	SOAPdenovo v. 1.6	18	96	3855		1086	21982	519, 68, KL895544:236113-237218	plot tinGut2
436	2005	triCas1	tbd	tbd	75	100	8201		50	6900	214, 50, Contig5855_Contig1469:226794-227271	plot triCas1
437	2005	triCas2	tbd	tbd	63	62	5442		50	313244	412, 50, chrUn_46:283716-284589	plot triCas2
438	2011	triMan1	GCF_000243295.1	AllPaths v. R38542	5748	75	527972		100	726640	1000, 100, JH594622:8537918-8540017	plot triMan1
439	2011	triSpi1	GCF_000181795.1	PCAP v. January 12, 2007	3	55	806		10	230	705, 10, GL622790v1:172202-173621	plot triSpi1
440	2014	triSui1	GCA_000701005.1	SOAPdenovo v. 2	37	138	7959		1449	82883	120, 68, KL363219v1:83933-84240	plot triSui1
442	2013	tupChi1	GCF_000334495.1	SOAPdenovo v. 1.05	914	220.5	290632		987.5	1823897	861, 16, KB320907:3306581-3308318	plot tupChi1
443	2008	turTru1	tbd	tbd	112	41.5	15556		388	52461	993, 100, scaffold_108458:6669-8754	plot turTru1
444	2011	turTru2	GCF_000151865.2	Atlas, Atlas-Link, Atlas-GapFill v. June 2011	5612	70	466776		188.5	1979352	44, 1, JH496197:2095-2183	plot turTru2
445	2014	tytAlb1	GCF_000687205.1	SOAPdenovo v. 1.6	2	170	340		326	652	289, 220, KK379918:2163-2960	plot tytAlb1
446	2014	ursMar1	GCF_000687225.1	SOAPdenovo v. 1.05	205	41	12130		3384	708704	711, 49, KK498595:3401141-3402611	plot ursMar1
447	2007	venter1	tbd	tbd	64	411.5	26995		100	64592	862, 20, chr2:102870978-102872721	plot venter1
448	2008	vicPac1	tbd	tbd	221	251	71912		276	310711	993, 100, scaffold_812:411693-413778	plot vicPac1
449	2013	vicPac2	GCF_000164845.1	Newbler v. May-2012	1245	69	115488		369	430947	685, 20, KB632527:971889-973278	plot vicPac2
450	1880	vicVic1	tbd	tbd	218	252.5	71401		263	309237	993, 100, scaffold_812:411693-413778	plot vicVic1
451	2016	xenLae2	GCF_001663975.1	Meraculous v. May-2013	2660	43	112843		265	1906995	50, 10, chr6S:105116072-105116181	plot xenLae2
452	2004	xenTro1	tbd	tbd	140	177.5	37717		889.5	437093	94, 1, scaffold_26179:153-341	plot xenTro1
453	2005	xenTro2	tbd	tbd	116	229.5	33928		806.5	320973	83, 1, scaffold_13788:6263-6429	plot xenTro2
454	2009	xenTro3	tbd	tbd	116	229.5	33928		806.5	320973	83, 1, GL185958:6263-6429	plot xenTro3
455	2012	xenTro7	GCF_000004195.2	ARACHNE v. 20071016_modified	98	82.5	16149		201	69741	775, 100, KB022861:7377-9026	plot xenTro7
456	2016	xenTro9	GCF_000004195.3	Meraculous v. May-2013	172	105.5	27368		100	99243	775, 100, chrUn_NW_016684502v1:7377-9026	plot xenTro9
457	2012	xipMac1	GCF_000241075.1	PCAP v. 3/30/09; Newbler v. MapAsmResearch-02/17/2010	548	50	32896		131	334271	30, 1, JH556915:15756-15816	plot xipMac1
459	2013	zonAlb1	GCF_000385455.1	Allpaths-LG v. Feb-2013	538	79	50834		1	134738	990, 1, KB913055:7474487-7476467	plot zonAlb1

assemblies with zero duplicate gap sequences

count	year	dbName	ncbiAsmId	number of gaps	assembly method
001	2012	aciBauTYTH_1	GCF_000302575.1	4	tbd
002	2006	afrOth13	tbd	220	tbd
003	2014	apaVit1	GCF_000703405.1	50921	SOAPdenovo v. 1.6
004	2006	borEut13	tbd	0	tbd
005	2014	bunEbo1	GCF_000889155.1	0	tbd
006	2010	caeJap3	tbd	0	tbd
007	2003	canFamPoodle1	GCA_000181415.1	0	tbd
008	2005	canHg12	tbd	0	tbd
009	2010	ce10	tbd	0	tbd
010	2013	ce11	GCF_000002985.6	0	tbd
011	2004	ce2	tbd	5	tbd
012	2005	ce3	tbd	0	tbd
013	2007	ce4	tbd	0	tbd
014	2007	ce5	tbd	0	tbd
015	2008	ce6	tbd	0	tbd
016	2009	ce7	tbd	0	tbd
017	2009	ce8	tbd	0	tbd
018	2010	ce9	tbd	0	tbd
019	2004	droMoj1	tbd	0	tbd
020	2014	eboVir1	tbd	2	tbd
021	2014	eboVir3	tbd	0	tbd
022	2006	euaGli13	tbd	19510	tbd
023	2006	eutHer13	tbd	304	tbd
024	1880	gasAsc0	GCA_000180675.1	0	tbd
025	2006	gliRes13	tbd	39623	tbd
026	2016	gorGor5	tbd	0	tbd
027	2006	homIni14	tbd	0	tbd
028	1880	homNea0	tbd	872	tbd
029	2006	lauRas13	tbd	31794	tbd
030	2014	marVir1	tbd	0	tbd
031	2008	melHap1	GCA_000172435.1	0	tbd
032	2008	melInc1	GCA_000180415.1	0	tbd
033	2006	otoGar1	tbd	0	tbd
034	2008	priPac2	GCA_000180635.1	59	tbd
035	2012	repBase0	tbd	2137	tbd
036	2012	repBase1	tbd	3623	tbd
037	1880	repBase2	tbd	3237	tbd
038	2014	resEbo1	GCF_000854085.1	0	tbd
039	2016	rouAeg1	GCF_001466805.2	638	SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0
040	2003	sacCer1	tbd	0	tbd
041	2008	sacCer2	tbd	0	tbd
042	2011	sacCer3	GCF_000146045.2	0	tbd
043	1880	salMan0	tbd	0	tbd
044	2011	strRat1	tbd	3207	tbd
045	2014	sudEbo1	GCF_000855585.1	0	tbd
046	2014	taiEbo1	GCF_000888475.1	0	tbd
047	2006	tupBel1	tbd	0	tbd
048	2014	zaiEbo1	GCF_000848505.1	0	tbd