Gene Set Summary Statistics: Difference between revisions
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<TABLE BORDER=1> | <TABLE BORDER=1> | ||
<TR><TH>db</TH><TH>sum exon<BR>sizes</TH><TH>min exon<BR>size</TH><TH>max exon<BR>size</TH><TH>mean exon<BR>size</TH></TR> | <TR><TH>db</TH><TH>sum exon<BR>sizes</TH><TH>min exon<BR>size</TH><TH>max exon<BR>size</TH><TH>mean exon<BR>size</TH></TR> | ||
<TR><TH>hg17</TH><TD ALIGN=RIGHT> | <TR><TH>hg17</TH><TD ALIGN=RIGHT>106839720</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>18172</TD><TD ALIGN=RIGHT>263</TD></TR> | ||
<TR><TH>hg18</TH><TD ALIGN=RIGHT> | <TR><TH>hg18</TH><TD ALIGN=RIGHT>146371091</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>36861</TD><TD ALIGN=RIGHT>282</TD></TR> | ||
<TR><TH>mm8</TH><TD ALIGN=RIGHT> | <TR><TH>mm8</TH><TD ALIGN=RIGHT>83159087</TD><TD ALIGN=RIGHT>4</TD><TD ALIGN=RIGHT>17497</TD><TD ALIGN=RIGHT>264</TD></TR> | ||
<TR><TH>mm9</TH><TD ALIGN=RIGHT> | <TR><TH>mm9</TH><TD ALIGN=RIGHT>117671086</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>29698</TD><TD ALIGN=RIGHT>282</TD></TR> | ||
</TABLE> | </TABLE> | ||
==summary of intron size statistics== | ==summary of intron size statistics== | ||
<TABLE BORDER=1> | <TABLE BORDER=1> | ||
Revision as of 19:21, 14 September 2007
gene sets measured
- hg17 - knownGenes version 2
- hg18 - knownGenes version 3
- mm8 - knownGenes version 2
- mm9 - knownGenes version 3
The min, max and mean measurements are per gene
summary of gene and exon counts
| db | gene count | total exon count | min exon count | max exon count | mean exon count |
|---|---|---|---|---|---|
| hg17 | 39368 | 405720 | 1 | 149 | 10 |
| hg18 | 56722 | 519308 | 1 | 2899 | 9 |
| mm8 | 31863 | 314628 | 1 | 313 | 10 |
| mm9 | 49220 | 417114 | 1 | 610 | 8 |
summary of exon size statistics
| db | sum exon sizes | min exon size | max exon size | mean exon size |
|---|---|---|---|---|
| hg17 | 106839720 | 1 | 18172 | 263 |
| hg18 | 146371091 | 1 | 36861 | 282 |
| mm8 | 83159087 | 4 | 17497 | 264 |
| mm9 | 117671086 | 1 | 29698 | 282 |
summary of intron size statistics
| db | sum intron sizes | min intron size | max intron size | mean intron size |
|---|---|---|---|---|
| hg17 | 2223220000 | 6 | 1096450 | 6069 |
| hg18 | 2784920000 | 1 | 1047320 | 6023 |
| mm8 | 1476080000 | 9 | 1347550 | 5220 |
| mm9 | 2055500000 | 1 | 1253430 | 5589 |
Top five exon count genes
| db | gene name (exon count) | ||||
|---|---|---|---|---|---|
| hg17 | NM_004543 (149) | AF535142 (146) | AF535142 (146) | NM_033071 (146) | AF495910 (146) |
| hg18 | uc001yrq.1 (2899) | uc002zvw.1 (322) | uc002umr.1 (313) | uc002stk.1 (217) | uc002umt.1 (194) |
| mm8 | NM_011652 (313) | NM_028004 (192) | NM_007738 (118) | NM_134448 (99) | DQ067088 (99) |
| mm9 | uc007pgj.1 (610) | uc008kfn.1 (313) | uc008kfo.1 (192) | uc008jqv.1 (157) | uc009rrh.1 (118) |
