Hg18 44way alignment

see also

Genome size statistics

sanity

The table below needs to be examined for sanity. The "chain on hg18" date should be after the masking date. Some of these existing pair-wise alignments need to be re-done since the genomes have been properly repeat masked. When all the chain tables exist, that is a good sign that the multiple alignment can be done.

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

	UCSC db name	Scientific name	Common name	assembly date	source version	RepeatMasker	WindowMasker	chain on hg18
01	hg18	Homo sapiens	Human	Mar. 2006	NCBI Build 36.1	2005-12-09	2006-12-05	N/A
02	panTro2	Pan troglodytes	Chimp	Mar. 2006	Washington University Build 2 Version 1	2006-03-24	N/A	2006-07-15
03	gorGor1	N/A	N/A	N/A	N/A	N/A	N/A	N/A
04	ponAbe2	Pongo pygmaeus abelii	Orangutan	July 2007	WUSTL 3.0	2007-09-15	N/A	2007-10-03
05	rheMac2	Macaca mulatta	Rhesus	Jan. 2006	Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4	2006-01-30	N/A	2006-03-17
06	calJac1	Callithrix jacchus	Marmoset	June 2007	WUSTL 2.0.2	2007-08-23	N/A	2007-11-13
07	tarSyr1	Tarsier syrichta	Tarsier	Aug. 2008	Broad Institute tarSyr1	2008-10-15	N/A	2008-07-28
08	otoGar1	Otolemur garnettii	Bushbaby	Dec. 2006	Broad version 1	2006-12-20	N/A	2007-02-27
09	micMur1	Microcebus murinus	Mouse lemur	Jun. 2003	Broad Institute micMur1	2008-08-03	N/A	2008-08-04
10	tupBel1	Tupaia belangeri	TreeShrew	Dec. 2006	Broad version 1	2008-10-15	N/A	2006-12-20
11	mm9	Mus musculus	Mouse	July 2007	NCBI Build 37	2007-07-20	N/A	2007-08-14
12	rn4	Rattus norvegicus	Rat	Nov. 2004	Baylor HGSC v. 3.4	2006-03-16	N/A	2006-02-17
13	dipOrd1	Dipodomys ordii	Kangaroo rat	Jul. 2008	Broad Institute	2008-10-15	N/A	2008-07-28
14	cavPor3	Cavia porcellus	Guinea Pig	Feb. 2008	Broad Institute cavPor3	2008-04-05	2008-04-08	2008-04-11
15	speTri1	Spermophilus tridecemlineatus	Squirrel	Feb. 2008	Broad Institute speTri1	2008-08-03	N/A	2008-08-05
16	oryCun1	Oryctolagus cuniculus	Rabbit	May 2005	Broad May 2005	2005-05-22	N/A	2007-04-17
17	ochPri2	Ochotona princeps	Pika	Jul. 2008	Broad Institute ochPri2	2008-07-28	N/A	2008-07-30
18	sorAra1	Sorex araneus	Shrew	June 2006	Broad Institute sorAra (Draft_v2)	N/A	N/A	2007-03-10
19	eriEur1	Erinaceus europaeus	Hedgehog	June 2006	Broad Institute eriEur1 (Draft_v1)	N/A	N/A	2007-03-11
20	felCat3	Felis catus	Cat	Mar. 2006	Broad Release 3	2006-10-16	N/A	2006-11-10
21	canFam2	Canis lupus familiaris	Dog	May 2005	Broad Institute v. 2.0	2005-07-10	N/A	2005-12-29
22	equCab2	Equus caballus	Horse	Sep. 2007	Broad Institute EquCab2	2008-04-03	N/A	2008-04-11
23	pteVam1	Pteropus vampyrus	Megabat	Jul. 2008	Broad Institute pteVam1	2008-10-15	N/A	2008-07-13
24	myoLuc1	Myotis lucifugus	Microbat	Mar. 2006	Broad Institute myoLuc1	2008-07-29	N/A	2008-08-02
25	turTru1	Tursiops truncatus	Dolphin	Feb. 2008	Broad Institute turTru1	2008-10-15	N/A	2008-07-12
26	bosTau4	Bos taurus	Cow	Oct. 2007	Baylor Release 4.0	2008-03-10	N/A	2008-03-11
27	vicPac1	Vicugna vicugna	Alpaca	Jul. 2008	Broad Institute vicPac1	N/A	N/A	N/A
28	dasNov2	Dasypus novemcinctus	Armadillo	Jul. 2008	Broad Institute dasNov2	2008-10-07	N/A	2008-08-03
29	choHof1	Choloepus hoffmanni	Sloth	Jul. 2008	Broad Institute choHof1	2008-10-16	N/A	2008-08-05
30	echTel1	Echinops telfairi	Tenrec	July 2005	Broad July 2005	2005-08-04	N/A	2007-04-17
31	loxAfr2	Loxodonta africana	Elephant	Jul. 2008	Broad Institute loxAfr2	2008-10-07	N/A	2008-08-02
32	proCap1	Procavia capensis	Rock hyrax	Jul. 2008	Broad Institute proCap1	2008-10-16	N/A	2008-08-01
33	monDom4	Monodelphis domestica	Opossum	Jan. 2006	Broad Inst. monDom4 Jan06	2006-02-10	N/A	2006-02-13
34	ornAna1	Ornithorhynchus anatinus	Platypus	Mar. 2007	WUSTL version 5.0.1	2007-07-20	N/A	2007-04-04
35	galGal3	Gallus gallus	Chicken	May 2006	Chicken Genome Sequencing Consortium May 2006 release	2006-05-18	2007-01-02	2006-05-23
36	taeGut1	Taeniopygia guttata	Zebra finch	Jul. 2008	Washington University taeGut1	N/A	2008-08-05	2008-09-09
37	anoCar1	Anolis carolinensis	Lizard	Feb. 2007	Broad Institute AnoCar (1.0)	2007-03-07	2007-02-16	2007-02-18
38	xenTro2	Xenopus tropicalis	X. tropicalis	Aug. 2005	JGI v4.1	2006-04-17	2007-02-20	2006-04-20
39	danRer5	Danio rerio	Zebrafish	July 2007	Wellcome Trust Sanger Institute, Zv7 assembly	2007-09-05	N/A	2007-10-17
40	tetNig1	Tetraodon nigroviridis	Tetraodon	Feb. 2004	Genoscope and Broad Institute, V7	2004-08-17	2006-12-05	2006-01-07
41	fr2	Takifugu rubripes	Fugu	Oct. 2004	JGI V4.0	2007-03-07	2007-01-22	2007-01-24
42	gasAcu1	Gasterosteus aculeatus	Stickleback	Feb. 2006	Broad Institute gasAcu1 (1.0)	2006-10-17	2006-12-05	2007-02-08
43	oryLat2	Oryzias latipes	Medaka	Oct. 2005	MEDAKA1	2008-08-12	2008-08-14	2008-08-19
44	petMar1	Petromyzon marinus	Lamprey	Mar. 2007	WUSTL v.3.0 (March 2007)	N/A	2008-01-28	2008-01-29