File:Kent allJoiner.ppt: Difference between revisions

Latest revision as of 20:24, 19 May 2017

Jim Kent, genecats 05 July 2008 - the all.joiner file which describes the database schema relationships for the UCSC genome browser

with the kent source tree:

If you have a specific identifier in all.joiner that you want to check, the you can use joinerCheck with the "-identifier" option.

Ex. command:

joinerCheck -keys -identifier=fishClones -database=hg38 ~/kent/src/hg/makeDb/schema/all.joiner

Or if you want to check all of the identifiers associated with a certain table, you can use the runJoiner.csh command.

Ex. command:

runJoiner.csh hg38 fishClones noTimes

Click on a date/time to view the file as it appeared at that time.

	Date/Time	Dimensions	User	Comment
current	18:57, 16 December 2008	(41 KB)	Hiram (talk \| contribs)	Jim Kent, genecats 05 July 2008 - the all.joiner file which describes the database schema relationships for the UCSC genome browser

You cannot overwrite this file.

The following 3 pages use this file:

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 Jim Kent, genecats 05 July 2008 - the all.joiner file which describes the database schema relationships for the UCSC genome browser
+with the kent source tree:
+If you have a specific identifier in all.joiner that you want to check, the you can use joinerCheck with the "-identifier" option.
+Ex. command:
+joinerCheck -keys -identifier=fishClones -database=hg38 ~/kent/src/hg/makeDb/schema/all.joiner
+Or if you want to check all of the identifiers associated with a certain table, you can use the runJoiner.csh command.
+Ex. command:
+runJoiner.csh hg38 fishClones noTimes