Hg19 Andy's alignment notes: Difference between revisions
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| Line 25: | Line 25: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | needs swap (2009-06-02) | ||
|- | |- | ||
| Guinea Pig | | Guinea Pig | ||
| Line 33: | Line 33: | ||
| 10M | | 10M | ||
| 100 | | 100 | ||
| | | needs swap (2009-06-02) | ||
|- | |- | ||
| Cow | | Cow | ||
| Line 41: | Line 41: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| running syntenic nets (2009-06-02) | | running syntenic nets, needs swap (2009-06-02) | ||
|- | |- | ||
| Megabat | | Megabat | ||
| Line 57: | Line 57: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | needs swap (2009-06-02) | ||
|- | |- | ||
| Alpaca | | Alpaca | ||
Revision as of 01:57, 3 June 2009
- everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
| Species | Database | Started | SEQ1_CHUNK | SEQ2_CHUNK | SEQ2_LIMIT | Status |
|---|---|---|---|---|---|---|
| Squirrel | speTri1 | 2009-05-14 | 10M | 10M | 100 | done (2009-05-31) |
| Cat | felCat3 | 2009-05-14 | 10M | 10M | 300 | needs swap (2009-06-02) |
| Guinea Pig | cavPor3 | 2009-05-14 | 10M | 10M | 100 | needs swap (2009-06-02) |
| Cow | bosTau4 | 2009-05-21 | 10M | 10M | 300 | running syntenic nets, needs swap (2009-06-02) |
| Megabat | pteVam1 | 2009-05-21 | 10M | 10M | 200 | done (2009-06-01) |
| Horse | equCab2 | 2009-05-21 | 10M | 10M | 300 | needs swap (2009-06-02) |
| Alpaca | vicPac1 | 2009-05-21 | 20M | 10M | 300 | running recip best (2009-06-02) |
| Microbat | myoLuc1 | 2009-05-21 | 20M | 10M | 300 | running recip best (2009-06-02) |
| Dolphin | turTru1 | 2009-05-21 | 10M | 10M | 200 | running recip best (2009-06-02) |
| Sloth | choHof1 | 2009-05-21 | 20M | 10M | 300 | running recip best (2009-06-02) |
| Wallaby | macEug1 | 2009-05-21 | 20M | 20M | 200 | running recip best (2009-06-02) |
