Hg.conf: Difference between revisions
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Please note the example template hg.conf file in the source tree | |||
[http://hgwdev.cse.ucsc.edu/~kent/src/unzipped/product/ex.hg.conf src/product/ex.hg.conf] | |||
There should be discussion in there of the options and what you may need. | |||
The hg.conf file goes in the CGI dir e.g. /usr/local/apache/cgi-bin. There are several settings in the hg.conf file to note: | The hg.conf file goes in the CGI dir e.g. /usr/local/apache/cgi-bin. There are several settings in the hg.conf file to note: | ||
* '''db.trackDb''' can be set to one or multiple trackDb tables. The tables are listed in the order of priority. If the first and second trackDb table both have a row where the tableName is the same, the row from the first table is used. Otherwise the rows of the tables are all added together into one giant trackDb table. | * '''db.trackDb''' can be set to one or multiple trackDb tables. The tables are listed in the order of priority. If the first and second trackDb table both have a row where the tableName is the same, the row from the first table is used. Otherwise the rows of the tables are all added together into one giant trackDb table. | ||
Revision as of 18:41, 4 March 2010
Please note the example template hg.conf file in the source tree src/product/ex.hg.conf
There should be discussion in there of the options and what you may need.
The hg.conf file goes in the CGI dir e.g. /usr/local/apache/cgi-bin. There are several settings in the hg.conf file to note:
- db.trackDb can be set to one or multiple trackDb tables. The tables are listed in the order of priority. If the first and second trackDb table both have a row where the tableName is the same, the row from the first table is used. Otherwise the rows of the tables are all added together into one giant trackDb table.
- If you're mirror, you better comment out the "bottleneck" statements. Otherwise your alignment tracks won't work.
