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== Welcome to the UCSC Genome Browser Wiki Site == | == Welcome to the UCSC Genome Browser Wiki Site == | ||
This wiki site provides a forum for sharing information about the UCSC Genome Browser, a Web-based tool that provides a fast, easy way to display a specific region of a genome assembly, along with dozens of aligned annotation tracks. The browser features data from a large collection of vertebrates, model organisms, and selected invertebrate genomes. | This wiki site provides a forum for sharing information about the [http://genome.ucsc.edu/ UCSC Genome Browser], a Web-based tool that provides a fast, easy way to display a specific region of a genome assembly, along with dozens of aligned annotation tracks. The browser features data from a large collection of vertebrates, model organisms, and selected invertebrate genomes. | ||
In addition to offering general information about the browser on this site, we'd also like to share tips and tricks for more advanced users, information for mirror sites and developers, and discussions of the underlying data sets and experimental protocols. Please feel free to use this wiki to organize your collaborations and exchange ideas about Genome Browser usage. Our intent is to develop a collection of interesting projects and a store of information useful to a variety of audiences. | In addition to offering general information about the browser on this site, we'd also like to share tips and tricks for more advanced users, information for mirror sites and developers, and discussions of the underlying data sets and experimental protocols. Please feel free to use this wiki to organize your collaborations and exchange ideas about Genome Browser usage. Our intent is to develop a collection of interesting projects and a store of information useful to a variety of audiences. | ||
Before editing this wiki, please create an account by clicking on the "Log in/create account" link at the top of the page. For information about editing wiki pages, see also the [[Help:Contents]] link for specific information about this wiki, or for a more extensive discussion of page editing, the Wikipedia guidelines on | Before editing this wiki, please create an account by clicking on the "Log in/create account" link at the top of the page. For information about editing wiki pages, see also the [[Help:Contents]] link for specific information about this wiki, or for a more extensive discussion of page editing, the Wikipedia guidelines on [http://en.wikipedia.org/wiki/Wikipedia:How_to_edit_a_page How to edit a page]. For navigation and organization assistance within this Wiki, use the [[Special:Categories|Categories]] link in the navigation panel on the left. | ||
== Using genome.ucsc.edu == | == Using genome.ucsc.edu == | ||
* [[Learn about the Browser|Learn more about the browser]] | |||
* [http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks How to create a custom track] | |||
* [[Browser_installation|Minimal browser install]] | |||
* [[Browser Mirrors|Maintaining Browser mirrors]] | |||
* [[Browser Installation| Installing Browser Mirror]] | |||
* [[:Category:User Developed Scripts| User Developed Scripts]] - helpful hints from the user community | * [[:Category:User Developed Scripts| User Developed Scripts]] - helpful hints from the user community | ||
| Line 35: | Line 20: | ||
== Browser Development == | == Browser Development == | ||
* [[:Category:Technical_FAQ|Technical FAQ Category]] - list of technical discussions | |||
* [[ENCODE Project at UCSC]] | |||
* [[Automation]] of genome assembly database builds | |||
* [[Custom track database]] implementation | |||
* [[Track metadata handling]] - discussion of design for expanded search/display, especially for ENCODE | |||
* [[Known genes III]] - design and discussion of next generation known genes track | |||
* [[Medical Sequencing Data|Medical sequencing data]] - discussion for design of next generation medical sequence data organization | |||
* [[Web Services & Javascript]] - design and discussion of a genome browser architecture for the 2010's and maybe 2009.... | |||
* [[Implementation_Notes]] describe some of the down-and-dirty details that QA engineers often ask developers about... or that they get an earful about when they ask simple questions! | |||
== Science and Justice == | == Science and Justice == | ||
* [[Genomics and Justice Meeting at UC Santa Cruz, May 17-18, 2007]] | * [[Genomics and Justice Meeting at UC Santa Cruz, May 17-18, 2007]] | ||
* Science and Justice at UCSC. | * [http://www2.ucsc.edu/scienceandjustice/ Science and Justice] at UCSC. | ||
* [[Ethics in the News]] | * [[Ethics in the News]] | ||
Revision as of 14:50, 21 August 2010
Welcome to the UCSC Genome Browser Wiki Site
This wiki site provides a forum for sharing information about the UCSC Genome Browser, a Web-based tool that provides a fast, easy way to display a specific region of a genome assembly, along with dozens of aligned annotation tracks. The browser features data from a large collection of vertebrates, model organisms, and selected invertebrate genomes.
In addition to offering general information about the browser on this site, we'd also like to share tips and tricks for more advanced users, information for mirror sites and developers, and discussions of the underlying data sets and experimental protocols. Please feel free to use this wiki to organize your collaborations and exchange ideas about Genome Browser usage. Our intent is to develop a collection of interesting projects and a store of information useful to a variety of audiences.
Before editing this wiki, please create an account by clicking on the "Log in/create account" link at the top of the page. For information about editing wiki pages, see also the Help:Contents link for specific information about this wiki, or for a more extensive discussion of page editing, the Wikipedia guidelines on How to edit a page. For navigation and organization assistance within this Wiki, use the Categories link in the navigation panel on the left.
Using genome.ucsc.edu
- Learn more about the browser
- How to create a custom track
- Minimal browser install
- Maintaining Browser mirrors
- Installing Browser Mirror
- User Developed Scripts - helpful hints from the user community
Genome Biology
- Genome Analysis - Phylogenetic origin of human SGSH introns Ancestral_introns:_SGSH
Browser Development
- Technical FAQ Category - list of technical discussions
- ENCODE Project at UCSC
- Automation of genome assembly database builds
- Custom track database implementation
- Track metadata handling - discussion of design for expanded search/display, especially for ENCODE
- Known genes III - design and discussion of next generation known genes track
- Medical sequencing data - discussion for design of next generation medical sequence data organization
- Web Services & Javascript - design and discussion of a genome browser architecture for the 2010's and maybe 2009....
- Implementation_Notes describe some of the down-and-dirty details that QA engineers often ask developers about... or that they get an earful about when they ask simple questions!
Science and Justice
- Genomics and Justice Meeting at UC Santa Cruz, May 17-18, 2007
- Science and Justice at UCSC.
- Ethics in the News
Administrative Information
You must log in and confirm your email address to edit pages. To create an account, click the "Log in/create account" link at the top of the page, then confirm your email address via the "Preferences" link. Please note: all content you create in genomewiki is public content and cannot be removed since it is always in the history of a page even if it is deleted after creation.
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