AnoCar2 conservation alignment: Difference between revisions

Revision as of 20:57, 18 May 2011

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

	UCSC db name	Scientific name	Common name	assembly date	source version	Repeat Masker	Window Masker	chain on anoCar2	% of anoCar2 matched (chainLink table)
01	anoCar2	Anolis carolinensis	Lizard	May 2010 (Broad AnoCar2.0/anoCar2)	Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)	2011-04-12	2011-04-13	N/A	N/A
02	galGal3	Gallus gallus	Chicken	May 2006 (WUGSC 2.1/galGal3)	Chicken Genome Sequencing Consortium May 2006 release	2009-08-15	2007-01-02	2011-04-26	6.822%
03	ornAna1	Ornithorhynchus anatinus	Platypus	Mar. 2007 (WUGSC 5.0.1/ornAna1)	WUSTL version 5.0.1	2009-08-15	N/A	2011-04-27	4.561%
04	hg19	Homo sapiens	Human	Feb. 2009 (GRCh37/hg19)	GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)	2009-08-15	N/A	2011-04-19	5.190%
05	mm9	Mus musculus	Mouse	July 2007 (NCBI37/mm9)	NCBI Build 37	2009-08-14	N/A	2011-04-26	4.981%
06	xenTro2	Xenopus tropicalis	X. tropicalis	Aug. 2005 (JGI 4.1/xenTro2)	JGI v4.1	2009-08-16	2009-09-02	2011-04-25	5.053%
07	gasAcu1	Gasterosteus aculeatus	Stickleback	Feb. 2006 (Broad/gasAcu1)	Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)	2009-08-15	2009-08-15	2011-04-26	3.143%

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 <UL>
-<LI>[[UCSC Multiple Alignments]] on other organisms</LI>
+<LI>7-way [[AnoCar2 Genome size statistics]]</LI>
+<LI>7-way [[AnoCar2 conservation lastz parameters]]</LI>
+<LI>all other [[UCSC Multiple Alignments]]</LI>
 </UL>