IMGT: Difference between revisions
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(Created page with "* The main reference database for immune-loci * It consists of databases, tools and additional files (e.g. ontology, some notes, etc) ** LIGM-DB: Nucleotide sequences of all kind...") |
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**** on NCBI: http://www.ncbi.nlm.nih.gov/nuccore/4732152?report=graph | **** on NCBI: http://www.ncbi.nlm.nih.gov/nuccore/4732152?report=graph | ||
**** Both look very similar, almost identical information | **** Both look very similar, almost identical information | ||
** | **** Annotations that they add: [http://imgt.org/download/LIGM-DB/ftable_doc.html Ftable] | ||
** MHC-DB | |||
*** Also pulls in from Genbank, but changes their identifiers | |||
*** E.g. [http://www.ebi.ac.uk/Tools/dbfetch/emblfetch?GQ240381 GQ240381] is annotated as a sequence of [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+2ke121D6Z1q+-e+\[IMGTHLA-ID:HLA06329\]] | |||
Revision as of 01:52, 12 July 2011
- The main reference database for immune-loci
- It consists of databases, tools and additional files (e.g. ontology, some notes, etc)
- LIGM-DB: Nucleotide sequences of all kinds. Can be C, V, J, D, combinations thereof.
- Seems to be pulling in from Genbank and change their annotations slightly with different keywords
- Automatic transformation of manual annotation?
- Example: Genbank AF139844
- in IMGT: http://imgt.org/cgi-bin/IMGTlect.jv?query=201+AF139844
- on NCBI: http://www.ncbi.nlm.nih.gov/nuccore/4732152?report=graph
- Both look very similar, almost identical information
- Annotations that they add: Ftable
- MHC-DB
- Also pulls in from Genbank, but changes their identifiers
- E.g. GQ240381 is annotated as a sequence of [IMGTHLA-ID:HLA06329\]
- LIGM-DB: Nucleotide sequences of all kinds. Can be C, V, J, D, combinations thereof.
